public void addSequence(int[] sequence) { int index = find(sequence); if (index < 0) { add(new SequenceCount(sequence)); } else { SequenceCount seqCount = (SequenceCount) get(index); seqCount.increment(); } }
public int find(int[] sequenceToFind) { for (int i = 0; i < size(); i++) { SequenceCount seqCount = (SequenceCount) get(i); int[] seq = seqCount.getSequence(); if (seq.length != sequenceToFind.length) { continue; } int j; for (j = 0; j < seq.length; j++) { if (seq[j] != sequenceToFind[j]) { break; } } if (j == seq.length) { return i; } } return -1; }
public static void main(String args[]) { if (args.length < 3) { System.err.println("Usage: Generate model-file ( -s length | -c count length )"); System.exit(1); } try { SAXParserFactory saxFactory = SAXParserFactory.newInstance(); saxFactory.setNamespaceAware(true); SAXParser saxParser = saxFactory.newSAXParser(); XMLReader xmlReader = saxParser.getXMLReader(); XMLModelReader modelReader = new XMLModelReader(xmlReader); FileReader modelInput = new FileReader(args[0]); InputSource source = new InputSource(modelInput); Model model = modelReader.load(source); modelInput.close(); model.check(); if (args[1].equals("-s")) { int[][] result = model.generateSequence(Integer.parseInt(args[2])); List lexicon = model.getLexicon(); for (int i = 0; i < result[0].length; i++) { System.out.print((Character) lexicon.get(result[0][i])); } System.out.println(); int numberOfStates = model.getNumberOfStates(); if (numberOfStates > 9) { for (int i = 0; i < result[1].length; i++) { System.out.print(result[1][i]); System.out.print(','); } } else { for (int i = 0; i < result[1].length; i++) { System.out.print(result[1][i]); } } System.out.println(); for (int i = 1; i < numberOfStates; i++) { System.out.println(i + " = " + model.getStateName(i)); } } else if (args[1].equals("-c")) { List lexicon = model.getLexicon(); int count = Integer.parseInt(args[2]); int length = Integer.parseInt(args[3]); ListOfSequences uniqueSeqs = new ListOfSequences(); for (int i = 0; i < count; i++) { int[][] result = model.generateSequence(length); uniqueSeqs.addSequence(result[0]); } Iterator seqs = uniqueSeqs.iterator(); while (seqs.hasNext()) { SequenceCount seq = (SequenceCount) seqs.next(); int[] key = seq.getSequence(); for (int i = 0; i < key.length; i++) { System.out.print((Character) lexicon.get(key[i])); } System.out.print(','); System.out.println(seq.getCount()); } } } catch (java.io.IOException ex) { ex.printStackTrace(); } catch (org.xml.sax.SAXException ex) { System.err.println(ex.getMessage()); } catch (javax.xml.parsers.ParserConfigurationException ex) { ex.printStackTrace(); } }