@SuppressWarnings("unchecked")
public ResidentConverter(List<ObjectConverter.ColumnInfo> allColumns) throws java.io.IOException {
Optional<ObjectConverter.ColumnInfo> column;
final java.util.List<ObjectConverter.ColumnInfo> columns =
allColumns
.stream()
.filter(
it ->
"mixinReference".equals(it.typeSchema) && "Resident_entity".equals(it.typeName))
.collect(Collectors.toList());
columnCount = columns.size();
readers = new ObjectConverter.Reader[columnCount];
for (int i = 0; i < readers.length; i++) {
readers[i] = (instance, rdr, ctx) -> StringConverter.skip(rdr, ctx);
}
final java.util.List<ObjectConverter.ColumnInfo> columnsExtended =
allColumns
.stream()
.filter(
it ->
"mixinReference".equals(it.typeSchema)
&& "-ngs_Resident_type-".equals(it.typeName))
.collect(Collectors.toList());
columnCountExtended = columnsExtended.size();
readersExtended = new ObjectConverter.Reader[columnCountExtended];
for (int i = 0; i < readersExtended.length; i++) {
readersExtended[i] = (instance, rdr, ctx) -> StringConverter.skip(rdr, ctx);
}
column = columns.stream().filter(it -> "id".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'id' column in mixinReference Resident_entity. Check if DB is in sync");
__index___id = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "id".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'id' column in mixinReference Resident. Check if DB is in sync");
__index__extended_id = (int) column.get().order - 1;
column = columns.stream().filter(it -> "birth".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'birth' column in mixinReference Resident_entity. Check if DB is in sync");
__index___birth = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "birth".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'birth' column in mixinReference Resident. Check if DB is in sync");
__index__extended_birth = (int) column.get().order - 1;
}
/**
* Search the tree for the first instance of `pattern`, giving preference to the left child.
*
* <p>`pattern` is a tree, representing a pattern of nodes. `NilNode`s should be considered
* wildcards.
*
* <p>Example patterns ---------------- `Tree()` Matches any tree.
*
* <p>`Tree(3)` Matches any tree where the root node has a value of `3`.
*
* <p>`Tree(3, Tree(2), Tree())` Matches any tree where the root node has a value of `3`, and a
* left sub-tree with a root value of `2`, and any (or no) right sub-tree.
*/
static Optional<Tree> find(Tree target, Tree pattern) {
if (pattern.isEmpty()) return Optional.of(target);
if (target.isEmpty()) return Optional.empty();
if (prefixMatches(target, pattern)) return Optional.of(target);
Optional<Tree> leftMatch = find(target.left(), pattern);
if (leftMatch.isPresent()) return leftMatch;
return find(target.right(), pattern);
}
@Override
public Object apply(List<Object> args, Context context) throws ParseException {
File outFile = null;
String editor = getEditor();
try {
outFile = File.createTempFile("stellar_shell", "out");
if (args.size() > 0) {
String arg = (String) args.get(0);
try (PrintWriter pw = new PrintWriter(outFile)) {
IOUtils.write(arg, pw);
}
}
} catch (IOException e) {
String message = "Unable to create temp file: " + e.getMessage();
LOG.error(message, e);
throw new IllegalStateException(message, e);
}
Optional<Object> console = context.getCapability(CONSOLE, false);
try {
PausableInput.INSTANCE.pause();
// shut down the IO for the console
ProcessBuilder processBuilder = new ProcessBuilder(editor, outFile.getAbsolutePath());
processBuilder.redirectInput(ProcessBuilder.Redirect.INHERIT);
processBuilder.redirectOutput(ProcessBuilder.Redirect.INHERIT);
processBuilder.redirectError(ProcessBuilder.Redirect.INHERIT);
try {
Process p = processBuilder.start();
// wait for termination.
p.waitFor();
try (BufferedReader br = new BufferedReader(new FileReader(outFile))) {
String ret = IOUtils.toString(br).trim();
return ret;
}
} catch (Exception e) {
String message = "Unable to read output: " + e.getMessage();
LOG.error(message, e);
return null;
}
} finally {
try {
PausableInput.INSTANCE.unpause();
if (console.isPresent()) {
((Console) console.get()).pushToInputStream("\b\n");
}
} catch (IOException e) {
LOG.error("Unable to unpause: " + e.getMessage(), e);
}
if (outFile.exists()) {
outFile.delete();
}
}
}
/**
* The core implementation of the search.
*
* @param root The root word to search from. Traditionally, this is the root of the sentence.
* @param candidateFragments The callback for the resulting sentence fragments. This is a
* predicate of a triple of values. The return value of the predicate determines whether we
* should continue searching. The triple is a triple of
* <ol>
* <li>The log probability of the sentence fragment, according to the featurizer and the
* weights
* <li>The features along the path to this fragment. The last element of this is the
* features from the most recent step.
* <li>The sentence fragment. Because it is relatively expensive to compute the resulting
* tree, this is returned as a lazy {@link Supplier}.
* </ol>
*
* @param classifier The classifier for whether an arc should be on the path to a clause split, a
* clause split itself, or neither.
* @param featurizer The featurizer to use. Make sure this matches the weights!
* @param actionSpace The action space we are allowed to take. Each action defines a means of
* splitting a clause on a dependency boundary.
*/
protected void search(
// The root to search from
IndexedWord root,
// The output specs
final Predicate<Triple<Double, List<Counter<String>>, Supplier<SentenceFragment>>>
candidateFragments,
// The learning specs
final Classifier<ClauseSplitter.ClauseClassifierLabel, String> classifier,
Map<String, ? extends List<String>> hardCodedSplits,
final Function<Triple<State, Action, State>, Counter<String>> featurizer,
final Collection<Action> actionSpace,
final int maxTicks) {
// (the fringe)
PriorityQueue<Pair<State, List<Counter<String>>>> fringe = new FixedPrioritiesPriorityQueue<>();
// (avoid duplicate work)
Set<IndexedWord> seenWords = new HashSet<>();
State firstState =
new State(null, null, -9000, null, x -> {}, true); // First state is implicitly "done"
fringe.add(Pair.makePair(firstState, new ArrayList<>(0)), -0.0);
int ticks = 0;
while (!fringe.isEmpty()) {
if (++ticks > maxTicks) {
// System.err.println("WARNING! Timed out on search with " + ticks + " ticks");
return;
}
// Useful variables
double logProbSoFar = fringe.getPriority();
assert logProbSoFar <= 0.0;
Pair<State, List<Counter<String>>> lastStatePair = fringe.removeFirst();
State lastState = lastStatePair.first;
List<Counter<String>> featuresSoFar = lastStatePair.second;
IndexedWord rootWord = lastState.edge == null ? root : lastState.edge.getDependent();
// Register thunk
if (lastState.isDone) {
if (!candidateFragments.test(
Triple.makeTriple(
logProbSoFar,
featuresSoFar,
() -> {
SemanticGraph copy = new SemanticGraph(tree);
lastState
.thunk
.andThen(
x -> {
// Add the extra edges back in, if they don't break the tree-ness of the
// extraction
for (IndexedWord newTreeRoot : x.getRoots()) {
if (newTreeRoot != null) { // what a strange thing to have happen...
for (SemanticGraphEdge extraEdge :
extraEdgesByGovernor.get(newTreeRoot)) {
assert Util.isTree(x);
//noinspection unchecked
addSubtree(
x,
newTreeRoot,
extraEdge.getRelation().toString(),
tree,
extraEdge.getDependent(),
tree.getIncomingEdgesSorted(newTreeRoot));
assert Util.isTree(x);
}
}
}
})
.accept(copy);
return new SentenceFragment(copy, assumedTruth, false);
}))) {
break;
}
}
// Find relevant auxilliary terms
SemanticGraphEdge subjOrNull = null;
SemanticGraphEdge objOrNull = null;
for (SemanticGraphEdge auxEdge : tree.outgoingEdgeIterable(rootWord)) {
String relString = auxEdge.getRelation().toString();
if (relString.contains("obj")) {
objOrNull = auxEdge;
} else if (relString.contains("subj")) {
subjOrNull = auxEdge;
}
}
// Iterate over children
// For each outgoing edge...
for (SemanticGraphEdge outgoingEdge : tree.outgoingEdgeIterable(rootWord)) {
// Prohibit indirect speech verbs from splitting off clauses
// (e.g., 'said', 'think')
// This fires if the governor is an indirect speech verb, and the outgoing edge is a ccomp
if (outgoingEdge.getRelation().toString().equals("ccomp")
&& ((outgoingEdge.getGovernor().lemma() != null
&& INDIRECT_SPEECH_LEMMAS.contains(outgoingEdge.getGovernor().lemma()))
|| INDIRECT_SPEECH_LEMMAS.contains(outgoingEdge.getGovernor().word()))) {
continue;
}
// Get some variables
String outgoingEdgeRelation = outgoingEdge.getRelation().toString();
List<String> forcedArcOrder = hardCodedSplits.get(outgoingEdgeRelation);
if (forcedArcOrder == null && outgoingEdgeRelation.contains(":")) {
forcedArcOrder =
hardCodedSplits.get(
outgoingEdgeRelation.substring(0, outgoingEdgeRelation.indexOf(":")) + ":*");
}
boolean doneForcedArc = false;
// For each action...
for (Action action :
(forcedArcOrder == null ? actionSpace : orderActions(actionSpace, forcedArcOrder))) {
// Check the prerequisite
if (!action.prerequisitesMet(tree, outgoingEdge)) {
continue;
}
if (forcedArcOrder != null && doneForcedArc) {
break;
}
// 1. Compute the child state
Optional<State> candidate =
action.applyTo(tree, lastState, outgoingEdge, subjOrNull, objOrNull);
if (candidate.isPresent()) {
double logProbability;
ClauseClassifierLabel bestLabel;
Counter<String> features =
featurizer.apply(Triple.makeTriple(lastState, action, candidate.get()));
if (forcedArcOrder != null && !doneForcedArc) {
logProbability = 0.0;
bestLabel = ClauseClassifierLabel.CLAUSE_SPLIT;
doneForcedArc = true;
} else if (features.containsKey("__undocumented_junit_no_classifier")) {
logProbability = Double.NEGATIVE_INFINITY;
bestLabel = ClauseClassifierLabel.CLAUSE_INTERM;
} else {
Counter<ClauseClassifierLabel> scores = classifier.scoresOf(new RVFDatum<>(features));
if (scores.size() > 0) {
Counters.logNormalizeInPlace(scores);
}
String rel = outgoingEdge.getRelation().toString();
if ("nsubj".equals(rel) || "dobj".equals(rel)) {
scores.remove(
ClauseClassifierLabel.NOT_A_CLAUSE); // Always at least yield on nsubj and dobj
}
logProbability = Counters.max(scores, Double.NEGATIVE_INFINITY);
bestLabel = Counters.argmax(scores, (x, y) -> 0, ClauseClassifierLabel.CLAUSE_SPLIT);
}
if (bestLabel != ClauseClassifierLabel.NOT_A_CLAUSE) {
Pair<State, List<Counter<String>>> childState =
Pair.makePair(
candidate.get().withIsDone(bestLabel),
new ArrayList<Counter<String>>(featuresSoFar) {
{
add(features);
}
});
// 2. Register the child state
if (!seenWords.contains(childState.first.edge.getDependent())) {
// System.err.println(" pushing " + action.signature() + " with " +
// argmax.first.edge);
fringe.add(childState, logProbability);
}
}
}
}
}
seenWords.add(rootWord);
}
// System.err.println("Search finished in " + ticks + " ticks and " + classifierEvals + "
// classifier evaluations.");
}
@SuppressWarnings("unchecked")
public Detail2Converter(List<ObjectConverter.ColumnInfo> allColumns) throws java.io.IOException {
Optional<ObjectConverter.ColumnInfo> column;
final java.util.List<ObjectConverter.ColumnInfo> columns =
allColumns
.stream()
.filter(it -> "test".equals(it.typeSchema) && "Detail2_entity".equals(it.typeName))
.collect(Collectors.toList());
columnCount = columns.size();
readers = new ObjectConverter.Reader[columnCount];
for (int i = 0; i < readers.length; i++) {
readers[i] =
(instance, rdr, ctx) -> {
StringConverter.skip(rdr, ctx);
return instance;
};
}
final java.util.List<ObjectConverter.ColumnInfo> columnsExtended =
allColumns
.stream()
.filter(it -> "test".equals(it.typeSchema) && "-ngs_Detail2_type-".equals(it.typeName))
.collect(Collectors.toList());
columnCountExtended = columnsExtended.size();
readersExtended = new ObjectConverter.Reader[columnCountExtended];
for (int i = 0; i < readersExtended.length; i++) {
readersExtended[i] =
(instance, rdr, ctx) -> {
StringConverter.skip(rdr, ctx);
return instance;
};
}
column = columns.stream().filter(it -> "u".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'u' column in test Detail2_entity. Check if DB is in sync");
__index___u = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "u".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'u' column in test Detail2. Check if DB is in sync");
__index__extended_u = (int) column.get().order - 1;
column = columns.stream().filter(it -> "dd".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'dd' column in test Detail2_entity. Check if DB is in sync");
__index___dd = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "dd".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'dd' column in test Detail2. Check if DB is in sync");
__index__extended_dd = (int) column.get().order - 1;
column = columns.stream().filter(it -> "EntityCompositeid".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'EntityCompositeid' column in test Detail2_entity. Check if DB is in sync");
__index___EntityCompositeid = (int) column.get().order - 1;
column =
columnsExtended.stream().filter(it -> "EntityCompositeid".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'EntityCompositeid' column in test Detail2. Check if DB is in sync");
__index__extended_EntityCompositeid = (int) column.get().order - 1;
column = columns.stream().filter(it -> "EntityIndex".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'EntityIndex' column in test Detail2_entity. Check if DB is in sync");
__index___EntityIndex = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "EntityIndex".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'EntityIndex' column in test Detail2. Check if DB is in sync");
__index__extended_EntityIndex = (int) column.get().order - 1;
column = columns.stream().filter(it -> "Index".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'Index' column in test Detail2_entity. Check if DB is in sync");
__index___Index = (int) column.get().order - 1;
column = columnsExtended.stream().filter(it -> "Index".equals(it.columnName)).findAny();
if (!column.isPresent())
throw new java.io.IOException(
"Unable to find 'Index' column in test Detail2. Check if DB is in sync");
__index__extended_Index = (int) column.get().order - 1;
}