Example #1
0
 private static void addFolder(FileSystem fs, Path p, JsonArray succeeded, JsonArray failed) {
   try {
     if (fs == null) return;
     for (FileStatus file : fs.listStatus(p)) {
       Path pfs = file.getPath();
       if (file.isDir()) {
         addFolder(fs, pfs, succeeded, failed);
       } else {
         Key k = Key.make(pfs.toString());
         long size = file.getLen();
         Value val = null;
         if (pfs.getName().endsWith(Extensions.JSON)) {
           JsonParser parser = new JsonParser();
           JsonObject json = parser.parse(new InputStreamReader(fs.open(pfs))).getAsJsonObject();
           JsonElement v = json.get(Constants.VERSION);
           if (v == null) throw new RuntimeException("Missing version");
           JsonElement type = json.get(Constants.TYPE);
           if (type == null) throw new RuntimeException("Missing type");
           Class c = Class.forName(type.getAsString());
           OldModel model = (OldModel) c.newInstance();
           model.fromJson(json);
         } else if (pfs.getName().endsWith(Extensions.HEX)) { // Hex file?
           FSDataInputStream s = fs.open(pfs);
           int sz = (int) Math.min(1L << 20, size); // Read up to the 1st meg
           byte[] mem = MemoryManager.malloc1(sz);
           s.readFully(mem);
           // Convert to a ValueArray (hope it fits in 1Meg!)
           ValueArray ary = new ValueArray(k, 0).read(new AutoBuffer(mem));
           val = new Value(k, ary, Value.HDFS);
         } else if (size >= 2 * ValueArray.CHUNK_SZ) {
           val =
               new Value(
                   k,
                   new ValueArray(k, size),
                   Value.HDFS); // ValueArray byte wrapper over a large file
         } else {
           val = new Value(k, (int) size, Value.HDFS); // Plain Value
           val.setdsk();
         }
         DKV.put(k, val);
         Log.info("PersistHdfs: DKV.put(" + k + ")");
         JsonObject o = new JsonObject();
         o.addProperty(Constants.KEY, k.toString());
         o.addProperty(Constants.FILE, pfs.toString());
         o.addProperty(Constants.VALUE_SIZE, file.getLen());
         succeeded.add(o);
       }
     }
   } catch (Exception e) {
     Log.err(e);
     JsonObject o = new JsonObject();
     o.addProperty(Constants.FILE, p.toString());
     o.addProperty(Constants.ERROR, e.getMessage());
     failed.add(o);
   }
 }
Example #2
0
 @Override
 public byte[] load(final Value v) {
   final byte[] b = MemoryManager.malloc1(v._max);
   long skip = 0;
   Key k = v._key;
   final Path p;
   if (_iceRoot != null) {
     p = new Path(_iceRoot, getIceName(v));
   } else {
     // Convert an arraylet chunk into a long-offset from the base file.
     if (k._kb[0] == Key.ARRAYLET_CHUNK) {
       skip = ValueArray.getChunkOffset(k); // The offset
       k = ValueArray.getArrayKey(k); // From the base file key
       if (k.toString().endsWith(Extensions.HEX)) { // Hex file?
         int value_len = DKV.get(k).memOrLoad().length; // How long is the ValueArray header?
         skip += value_len;
       }
     }
     p = new Path(k.toString());
   }
   final long skip_ = skip;
   run(
       new Callable() {
         @Override
         public Object call() throws Exception {
           FileSystem fs = FileSystem.get(p.toUri(), CONF);
           FSDataInputStream s = null;
           try {
             s = fs.open(p);
             // NOTE:
             // The following line degrades performance of HDFS load from S3 API:
             // s.readFully(skip,b,0,b.length);
             // Google API's simple seek has better performance
             // Load of 300MB file via Google API ~ 14sec, via s.readFully ~ 5min (under the same
             // condition)
             ByteStreams.skipFully(s, skip_);
             ByteStreams.readFully(s, b);
             assert v.isPersisted();
           } finally {
             Utils.close(s);
           }
           return null;
         }
       },
       true,
       v._max);
   return b;
 }
Example #3
0
 @Override
 public byte[] load(final Value v) {
   final byte[] b = MemoryManager.malloc1(v._max);
   long skip = 0;
   Key k = v._key;
   if (k._kb[0] == Key.ARRAYLET_CHUNK) {
     skip = ValueArray.getChunkOffset(k); // The offset
     k = ValueArray.getArrayKey(k); // From the base file key
   } else if (k._kb[0] == Key.DVEC) {
     skip = water.fvec.NFSFileVec.chunkOffset(k); // The offset
   }
   final Path p =
       _iceRoot == null ? new Path(getPathForKey(k)) : new Path(_iceRoot, getIceName(v));
   final long skip_ = skip;
   run(
       new Callable() {
         @Override
         public Object call() throws Exception {
           FileSystem fs = FileSystem.get(p.toUri(), CONF);
           FSDataInputStream s = null;
           try {
             s = fs.open(p);
             // NOTE:
             // The following line degrades performance of HDFS load from S3 API:
             // s.readFully(skip,b,0,b.length);
             // Google API's simple seek has better performance
             // Load of 300MB file via Google API ~ 14sec, via s.readFully ~ 5min (under the same
             // condition)
             ByteStreams.skipFully(s, skip_);
             ByteStreams.readFully(s, b);
             assert v.isPersisted();
           } finally {
             Utils.close(s);
           }
           return null;
         }
       },
       true,
       v._max);
   return b;
 }