byte[] getJar(String address) {
// System.out.println("getJar: "+address);
byte[] data;
try {
URL url = new URL(address);
IJ.showStatus("Connecting to " + IJ.URL);
URLConnection uc = url.openConnection();
int len = uc.getContentLength();
if (IJ.debugMode) IJ.log("Updater (url): " + address + " " + len);
if (len <= 0) return null;
String name = address.contains("wsr") ? "daily build (" : "ij.jar (";
IJ.showStatus("Downloading " + name + IJ.d2s((double) len / 1048576, 1) + "MB)");
InputStream in = uc.getInputStream();
data = new byte[len];
int n = 0;
while (n < len) {
int count = in.read(data, n, len - n);
if (count < 0) throw new EOFException();
n += count;
IJ.showProgress(n, len);
}
in.close();
} catch (IOException e) {
if (IJ.debugMode) IJ.log("" + e);
return null;
}
if (IJ.debugMode) IJ.wait(6000);
return data;
}
public void run(ImageProcessor ip) {
dimz = stack.getSize();
dimy = stack.getWidth();
dimx = stack.getHeight();
SaveDialog sd = new SaveDialog("Save Measurements as Text...", "res", ".dat");
String name = sd.getFileName();
if (name == null) return;
String directory = sd.getDirectory();
nb = calculnb(stack); // -1;
IJ.showStatus("Measure parameters for the " + nb + " objects ...");
if (nb < 1) {
IJ.showMessage("volume must be labeled");
} else {
double[] volume_m = new double[nb];
int[] volume_p = new int[nb];
double[] surface = new double[nb];
double[] surfacenb = new double[nb];
double[][][] I = new double[3][3][nb];
double[][] J = new double[3][nb];
double[][][] dir = new double[3][3][nb];
double[] xg = new double[nb];
double[] yg = new double[nb];
double[] zg = new double[nb];
byte[] bord = new byte[nb];
// double[] a = new double[nb];
// double[] b = new double[nb];
// double[] c = new double[nb];
// double[] Fab = new double[nb];
// double[] Fac = new double[nb];
// double[] Fbc = new double[nb];
// double[] sp = new double[nb];
double[][] lmin = new double[nb][3];
double[][] lmax = new double[nb][3];
IJ.showStatus("Measure surfaces ...");
calculmarchsurfstack(stack, nb, surface, volume_m);
calculmarchsurfstacknb(stack, nb, surfacenb);
// calculvolumestack(stack,nb,volume_p);
IJ.showStatus("Measure volumes and inertia ...");
calculcgstack(stack, nb, volume_p, xg, yg, zg);
calculinertiestack(stack, nb, xg, yg, zg, I);
inertie(nb, I, J, dir);
IJ.showStatus("Measure bounding boxes ...");
boitestack(stack, nb, xg, yg, zg, dir, lmin, lmax);
borderstack(stack, nb, bord);
IJ.showStatus("Save results ...");
sauvegarde(
volume_p, volume_m, surface, surfacenb, xg, yg, zg, J, dir, nb, bord, lmin, lmax,
directory, name);
volume_m = null;
volume_p = null;
surface = null;
xg = null;
yg = null;
zg = null;
}
}
public void dragOver(DropTargetDragEvent e) {
if (IJ.debugMode) IJ.log("DragOver: " + e.getLocation());
Point loc = e.getLocation();
int buttonSize = Toolbar.getButtonSize();
int width = IJ.getInstance().getSize().width;
openAsVirtualStack = width - loc.x <= buttonSize;
if (openAsVirtualStack) IJ.showStatus("<<Open as Virtual Stack>>");
else IJ.showStatus("<<Drag and Drop>>");
}
/** Called from io/Opener.java. */
public void run(String path) {
if (path.equals("")) return;
File theFile = new File(path);
String directory = theFile.getParent();
String fileName = theFile.getName();
if (directory == null) directory = "";
// Try and recognise file type and load the file if recognised
ImagePlus imp = openImage(directory, fileName, path);
if (imp == null) {
IJ.showStatus("");
return; // failed to load file or plugin has opened and displayed it
}
ImageStack stack = imp.getStack();
// get the title from the stack (falling back to the fileName)
String title = imp.getTitle().equals("") ? fileName : imp.getTitle();
// set the stack of this HandleExtraFileTypes object
// to that attached to the ImagePlus object returned by openImage()
setStack(title, stack);
// copy over the calibration info since it doesn't come with the ImageProcessor
setCalibration(imp.getCalibration());
// also copy the Show Info field over if it exists
if (imp.getProperty("Info") != null) setProperty("Info", imp.getProperty("Info"));
// copy the FileInfo
setFileInfo(imp.getOriginalFileInfo());
// copy dimensions
if (IJ.getVersion().compareTo("1.38s") >= 0)
setDimensions(imp.getNChannels(), imp.getNSlices(), imp.getNFrames());
if (IJ.getVersion().compareTo("1.41o") >= 0) setOpenAsHyperStack(imp.getOpenAsHyperStack());
}
void write16BitStack(OutputStream out, Object[] stack) throws IOException {
showProgressBar = false;
for (int i = 0; i < fi.nImages; i++) {
IJ.showStatus("Writing: " + (i + 1) + "/" + fi.nImages);
write16BitImage(out, (short[]) stack[i]);
IJ.showProgress((double) (i + 1) / fi.nImages);
}
}
public static byte[] download(String urlString, String name) {
int maxLength = 52428800; // 50MB
URL url = null;
boolean unknownLength = false;
byte[] data = null;
;
int n = 0;
try {
url = new URL(urlString);
if (IJ.debugMode) IJ.log("PluginInstaller: " + urlString + " " + url);
if (url == null) return null;
URLConnection uc = url.openConnection();
int len = uc.getContentLength();
unknownLength = len < 0;
if (unknownLength) len = maxLength;
if (name != null) IJ.showStatus("Downloading " + url.getFile());
InputStream in = uc.getInputStream();
data = new byte[len];
int lenk = len / 1024;
while (n < len) {
int count = in.read(data, n, len - n);
if (count < 0) break;
n += count;
if (name != null)
IJ.showStatus("Downloading " + name + " (" + (n / 1024) + "/" + lenk + "k)");
IJ.showProgress(n, len);
}
in.close();
} catch (Exception e) {
String msg = "" + e;
if (!msg.contains("://")) msg += "\n " + urlString;
IJ.error("Plugin Installer", msg);
return null;
} finally {
IJ.showProgress(1.0);
}
if (name != null) IJ.showStatus("");
if (unknownLength) {
byte[] data2 = data;
data = new byte[n];
for (int i = 0; i < n; i++) data[i] = data2[i];
}
return data;
}
void write16BitVirtualStack(OutputStream out, VirtualStack virtualStack) throws IOException {
showProgressBar = false;
boolean flip = "FlipTheseImages".equals(fi.fileName);
for (int i = 1; i <= fi.nImages; i++) {
IJ.showStatus("Writing: " + i + "/" + fi.nImages);
ImageProcessor ip = virtualStack.getProcessor(i);
if (flip) ip.flipVertical();
short[] pixels = (short[]) ip.getPixels();
write16BitImage(out, pixels);
IJ.showProgress((double) i / fi.nImages);
}
}
String[] openUrlAsList(String address) {
IJ.showStatus("Connecting to " + IJ.URL);
Vector v = new Vector();
try {
URL url = new URL(address);
InputStream in = url.openStream();
BufferedReader br = new BufferedReader(new InputStreamReader(in));
String line;
while (true) {
line = br.readLine();
if (line == null) break;
if (!line.equals("")) v.addElement(line);
}
br.close();
} catch (Exception e) {
}
String[] lines = new String[v.size()];
v.copyInto((String[]) lines);
IJ.showStatus("");
return lines;
}
void setStackDisplayRange(ImagePlus imp) {
ImageStack stack = imp.getStack();
double min = Double.MAX_VALUE;
double max = -Double.MAX_VALUE;
int n = stack.getSize();
for (int i = 1; i <= n; i++) {
if (!silentMode) IJ.showStatus("Calculating stack min and max: " + i + "/" + n);
ImageProcessor ip = stack.getProcessor(i);
ip.resetMinAndMax();
if (ip.getMin() < min) min = ip.getMin();
if (ip.getMax() > max) max = ip.getMax();
}
imp.getProcessor().setMinAndMax(min, max);
imp.updateAndDraw();
}
/** Opens a stack of images. */
ImagePlus openStack(ColorModel cm, boolean show) {
ImageStack stack = new ImageStack(fi.width, fi.height, cm);
long skip = fi.getOffset();
Object pixels;
try {
ImageReader reader = new ImageReader(fi);
InputStream is = createInputStream(fi);
if (is == null) return null;
IJ.resetEscape();
for (int i = 1; i <= fi.nImages; i++) {
if (!silentMode) IJ.showStatus("Reading: " + i + "/" + fi.nImages);
if (IJ.escapePressed()) {
IJ.beep();
IJ.showProgress(1.0);
silentMode = false;
return null;
}
pixels = reader.readPixels(is, skip);
if (pixels == null) break;
stack.addSlice(null, pixels);
skip = fi.gapBetweenImages;
if (!silentMode) IJ.showProgress(i, fi.nImages);
}
is.close();
} catch (Exception e) {
IJ.log("" + e);
} catch (OutOfMemoryError e) {
IJ.outOfMemory(fi.fileName);
stack.trim();
}
if (!silentMode) IJ.showProgress(1.0);
if (stack.getSize() == 0) return null;
if (fi.sliceLabels != null && fi.sliceLabels.length <= stack.getSize()) {
for (int i = 0; i < fi.sliceLabels.length; i++) stack.setSliceLabel(fi.sliceLabels[i], i + 1);
}
ImagePlus imp = new ImagePlus(fi.fileName, stack);
if (fi.info != null) imp.setProperty("Info", fi.info);
if (show) imp.show();
imp.setFileInfo(fi);
setCalibration(imp);
ImageProcessor ip = imp.getProcessor();
if (ip.getMin() == ip.getMax()) // find stack min and max if first slice is blank
setStackDisplayRange(imp);
if (!silentMode) IJ.showProgress(1.0);
silentMode = false;
return imp;
}
byte[] getJar(String address) {
byte[] data;
boolean gte133 = version().compareTo("1.33u") >= 0;
try {
URL url = new URL(address);
URLConnection uc = url.openConnection();
int len = uc.getContentLength();
String name = address.endsWith("ij/ij.jar") ? "daily build" : "ij.jar";
IJ.showStatus("Downloading ij.jar (" + IJ.d2s((double) len / 1048576, 1) + "MB)");
InputStream in = uc.getInputStream();
data = new byte[len];
int n = 0;
while (n < len) {
int count = in.read(data, n, len - n);
if (count < 0) throw new EOFException();
n += count;
if (gte133) IJ.showProgress(n, len);
}
in.close();
} catch (IOException e) {
return null;
}
return data;
}
private void fitglobal() {
int nparams = 11;
int nsel = 0;
for (int i = 0; i < ncurves; i++) {
if (include[i]) {
nsel++;
}
}
double[][] params = new double[nsel][nparams];
String[][] tempformulas = new String[nsel][nparams];
double[][][] constraints = new double[2][nsel][nparams];
int[][] vflmatrix = new int[nsel][nparams];
int counter = 0;
for (int i = 0; i < ncurves; i++) {
if (include[i]) {
for (int j = 0; j < nparams; j++) {
params[counter][j] = globalparams[i][j];
tempformulas[counter][j] = globalformulas[i][j];
constraints[0][counter][j] = globalconstraints[0][i][j];
constraints[1][counter][j] = globalconstraints[1][i][j];
vflmatrix[counter][j] = globalvflmatrix[i][j];
}
counter++;
}
for (int j = 0; j < nparams; j++) {
undoparams[i][j] = globalparams[i][j];
undoformulas[i][j] = globalformulas[i][j];
undovflmatrix[i][j] = globalvflmatrix[i][j];
}
for (int j = 0; j < xpts; j++) {
for (int k = 0; k < ypts; k++) {
undofit[i][j][k] = fit[i][j][k];
}
}
undoc2[i] = c2[i];
}
undoglobalc2 = globalc2;
if (showglobalfitdialog(params, tempformulas, vflmatrix)) {
counter = 0;
for (int i = 0; i < ncurves; i++) {
if (include[i]) {
for (int j = 0; j < nparams; j++) {
globalparams[i][j] = params[counter][j];
globalformulas[i][j] = tempformulas[counter][j];
globalvflmatrix[i][j] = vflmatrix[counter][j];
}
counter++;
}
}
double[] stats = new double[2];
float[][] tempdata = new float[nsel][xpts * ypts];
float[][] tempweights = new float[nsel][xpts * ypts];
counter = 0;
for (int i = 0; i < ncurves; i++) {
if (include[i]) {
for (int j = 0; j < xpts; j++) {
for (int k = 0; k < ypts; k++) {
tempdata[counter][j + k * xpts] = (float) ((double) pch[i][j][k] / (double) nmeas[i]);
tempweights[counter][j + k * xpts] = weights[i][j][k];
}
}
counter++;
}
}
int tempmaxiter = globalfitclass.maxiter;
if (checkc2) {
globalfitclass.changemaxiter(0);
}
double[] tempc2vals = new double[nsel];
IJ.showStatus("Fitting Globally");
float[][] tempfit =
globalfitclass.fitdata(
params,
vflmatrix,
tempformulas,
paramsnames,
constraints,
tempdata,
tempweights,
stats,
tempc2vals,
false);
IJ.showStatus("Fit Complete");
globalfitclass.changemaxiter(tempmaxiter);
globalc2 = stats[1];
globalc2label.setText("Global chi^2 = " + (float) globalc2);
counter = 0;
for (int i = 0; i < ncurves; i++) {
if (include[i]) {
for (int j = 0; j < xpts; j++) {
for (int k = 0; k < ypts; k++) {
fit[i][j][k] = tempfit[counter][j + xpts * k] * (float) nmeas[i];
}
}
if (i == dispcurve) {
pwfit.updateSeries(fit[dispcurve], 1, true);
}
for (int j = 0; j < nparams; j++) {
globalparams[i][j] = params[counter][j];
}
c2[i] = tempc2vals[counter];
c2array[i].setText("" + (float) c2[i]);
counter++;
}
}
float[] temp = pwfit.getLimits();
temp[4] = 1.0f;
pwfit.setLimits(temp);
}
}
public void showresults(String results) {
IJ.showStatus(results);
IJ.log(results);
}
public void mousePressed(MouseEvent e) {
Undo.reset();
if (!Prefs.noClickToGC) System.gc();
IJ.showStatus(version() + IJ.freeMemory());
if (IJ.debugMode) IJ.log("Windows: " + WindowManager.getWindowCount());
}
public void dragExit(DropTargetEvent e) {
IJ.showStatus("");
}
public void dragEnter(DropTargetDragEvent e) {
IJ.showStatus("<<Drag and Drop>>");
if (IJ.debugMode) IJ.log("DragEnter: " + e.getLocation());
e.acceptDrag(DnDConstants.ACTION_COPY);
openAsVirtualStack = false;
}
/**
* If 'applet' is not null, creates a new ImageJ frame that runs as an applet. If 'mode' is
* ImageJ.EMBEDDED and 'applet is null, creates an embedded (non-standalone) version of ImageJ.
*/
public ImageJ(java.applet.Applet applet, int mode) {
super("ImageJ");
embedded = applet == null && (mode == EMBEDDED || mode == NO_SHOW);
this.applet = applet;
String err1 = Prefs.load(this, applet);
if (IJ.isLinux()) {
backgroundColor = new Color(240, 240, 240);
setBackground(backgroundColor);
}
Menus m = new Menus(this, applet);
String err2 = m.addMenuBar();
m.installPopupMenu(this);
setLayout(new GridLayout(2, 1));
// Tool bar
toolbar = new Toolbar();
toolbar.addKeyListener(this);
add(toolbar);
// Status bar
statusBar = new Panel();
statusBar.setLayout(new BorderLayout());
statusBar.setForeground(Color.black);
statusBar.setBackground(backgroundColor);
statusLine = new Label();
statusLine.setFont(SansSerif12);
statusLine.addKeyListener(this);
statusLine.addMouseListener(this);
statusBar.add("Center", statusLine);
progressBar = new ProgressBar(120, 20);
progressBar.addKeyListener(this);
progressBar.addMouseListener(this);
statusBar.add("East", progressBar);
statusBar.setSize(toolbar.getPreferredSize());
add(statusBar);
IJ.init(this, applet);
addKeyListener(this);
addWindowListener(this);
setFocusTraversalKeysEnabled(false);
Point loc = getPreferredLocation();
Dimension tbSize = toolbar.getPreferredSize();
int ijWidth = tbSize.width + 10;
int ijHeight = 100;
setCursor(Cursor.getDefaultCursor()); // work-around for JDK 1.1.8 bug
if (mode != NO_SHOW) {
if (IJ.isWindows())
try {
setIcon();
} catch (Exception e) {
}
setBounds(loc.x, loc.y, ijWidth, ijHeight); // needed for pack to work
setLocation(loc.x, loc.y);
pack();
setResizable(!(IJ.isMacintosh() || IJ.isWindows())); // make resizable on Linux
show();
}
if (err1 != null) IJ.error(err1);
if (err2 != null) {
IJ.error(err2);
IJ.runPlugIn("ij.plugin.ClassChecker", "");
}
m.installStartupMacroSet();
if (IJ.isMacintosh() && applet == null) {
Object qh = null;
qh = IJ.runPlugIn("MacAdapter", "");
if (qh == null) IJ.runPlugIn("QuitHandler", "");
}
if (applet == null) IJ.runPlugIn("ij.plugin.DragAndDrop", "");
String str = m.getMacroCount() == 1 ? " macro" : " macros";
IJ.showStatus(version() + m.getPluginCount() + " commands; " + m.getMacroCount() + str);
// if (applet==null && !embedded && Prefs.runSocketListener)
// new SocketListener();
configureProxy();
if (applet == null) loadCursors();
}
/**
* If 'applet' is not null, creates a new ImageJ frame that runs as an applet. If 'mode' is
* ImageJ.EMBEDDED and 'applet is null, creates an embedded (non-standalone) version of ImageJ.
*/
public ImageJ(java.applet.Applet applet, int mode) {
super("ImageJ");
if ((mode & DEBUG) != 0) IJ.setDebugMode(true);
mode = mode & 255;
if (IJ.debugMode) IJ.log("ImageJ starting in debug mode: " + mode);
embedded = applet == null && (mode == EMBEDDED || mode == NO_SHOW);
this.applet = applet;
String err1 = Prefs.load(this, applet);
setBackground(backgroundColor);
Menus m = new Menus(this, applet);
String err2 = m.addMenuBar();
m.installPopupMenu(this);
setLayout(new BorderLayout());
// Tool bar
toolbar = new Toolbar();
toolbar.addKeyListener(this);
add("Center", toolbar);
// Status bar
statusBar = new Panel();
statusBar.setLayout(new BorderLayout());
statusBar.setForeground(Color.black);
statusBar.setBackground(backgroundColor);
statusLine = new JLabel();
statusLine.setFont(new Font("SansSerif", Font.PLAIN, 13));
statusLine.addKeyListener(this);
statusLine.addMouseListener(this);
statusBar.add("Center", statusLine);
progressBar = new ProgressBar(120, 20);
progressBar.addKeyListener(this);
progressBar.addMouseListener(this);
statusBar.add("East", progressBar);
add("South", statusBar);
IJ.init(this, applet);
addKeyListener(this);
addWindowListener(this);
setFocusTraversalKeysEnabled(false);
m.installStartupMacroSet(); // add custom tools
runStartupMacro();
Point loc = getPreferredLocation();
Dimension tbSize = toolbar.getPreferredSize();
setCursor(Cursor.getDefaultCursor()); // work-around for JDK 1.1.8 bug
if (mode != NO_SHOW) {
if (IJ.isWindows())
try {
setIcon();
} catch (Exception e) {
}
setLocation(loc.x, loc.y);
setResizable(!IJ.isMacOSX());
pack();
setVisible(true);
}
if (err1 != null) IJ.error(err1);
if (err2 != null) {
IJ.error(err2);
IJ.runPlugIn("ij.plugin.ClassChecker", "");
}
if (IJ.isMacintosh() && applet == null) {
Object qh = null;
qh = IJ.runPlugIn("MacAdapter", "");
if (qh == null) IJ.runPlugIn("QuitHandler", "");
}
if (applet == null) IJ.runPlugIn("ij.plugin.DragAndDrop", "");
String str = m.getMacroCount() == 1 ? " macro" : " macros";
IJ.showStatus(version() + m.getPluginCount() + " commands; " + m.getMacroCount() + str);
configureProxy();
if (applet == null) loadCursors();
}
/** Restores original disk or network version of image. */
public void revertToSaved(ImagePlus imp) {
Image img;
ProgressBar pb = IJ.getInstance().getProgressBar();
ImageProcessor ip;
String path = fi.directory + fi.fileName;
if (fi.fileFormat == fi.GIF_OR_JPG) {
// restore gif or jpg
img = Toolkit.getDefaultToolkit().createImage(path);
imp.setImage(img);
if (imp.getType() == ImagePlus.COLOR_RGB) Opener.convertGrayJpegTo8Bits(imp);
return;
}
if (fi.fileFormat == fi.DICOM) {
// restore DICOM
ImagePlus imp2 = (ImagePlus) IJ.runPlugIn("ij.plugin.DICOM", path);
if (imp2 != null) imp.setProcessor(null, imp2.getProcessor());
return;
}
if (fi.fileFormat == fi.BMP) {
// restore BMP
ImagePlus imp2 = (ImagePlus) IJ.runPlugIn("ij.plugin.BMP_Reader", path);
if (imp2 != null) imp.setProcessor(null, imp2.getProcessor());
return;
}
if (fi.fileFormat == fi.PGM) {
// restore PGM
ImagePlus imp2 = (ImagePlus) IJ.runPlugIn("ij.plugin.PGM_Reader", path);
if (imp2 != null) imp.setProcessor(null, imp2.getProcessor());
return;
}
if (fi.fileFormat == fi.ZIP_ARCHIVE) {
// restore ".zip" file
ImagePlus imp2 = (new Opener()).openZip(path);
if (imp2 != null) imp.setProcessor(null, imp2.getProcessor());
return;
}
// restore PNG or another image opened using ImageIO
if (fi.fileFormat == fi.IMAGEIO) {
ImagePlus imp2 = (new Opener()).openUsingImageIO(path);
if (imp2 != null) imp.setProcessor(null, imp2.getProcessor());
return;
}
if (fi.nImages > 1) return;
ColorModel cm;
if (fi.url == null || fi.url.equals("")) IJ.showStatus("Loading: " + path);
else IJ.showStatus("Loading: " + fi.url + fi.fileName);
Object pixels = readPixels(fi);
if (pixels == null) return;
cm = createColorModel(fi);
switch (fi.fileType) {
case FileInfo.GRAY8:
case FileInfo.COLOR8:
case FileInfo.BITMAP:
ip = new ByteProcessor(width, height, (byte[]) pixels, cm);
imp.setProcessor(null, ip);
break;
case FileInfo.GRAY16_SIGNED:
case FileInfo.GRAY16_UNSIGNED:
case FileInfo.GRAY12_UNSIGNED:
ip = new ShortProcessor(width, height, (short[]) pixels, cm);
imp.setProcessor(null, ip);
break;
case FileInfo.GRAY32_INT:
case FileInfo.GRAY32_FLOAT:
ip = new FloatProcessor(width, height, (float[]) pixels, cm);
imp.setProcessor(null, ip);
break;
case FileInfo.RGB:
case FileInfo.BGR:
case FileInfo.ARGB:
case FileInfo.ABGR:
case FileInfo.RGB_PLANAR:
img =
Toolkit.getDefaultToolkit()
.createImage(new MemoryImageSource(width, height, (int[]) pixels, 0, width));
imp.setImage(img);
break;
}
}
void install() {
subMenus.clear();
if (text != null) {
Tokenizer tok = new Tokenizer();
pgm = tok.tokenize(text);
}
if (macrosMenu != null) IJ.showStatus("");
int[] code = pgm.getCode();
Symbol[] symbolTable = pgm.getSymbolTable();
int count = 0, token, nextToken, address;
String name;
Symbol symbol;
shortcutsInUse = null;
inUseCount = 0;
nShortcuts = 0;
toolCount = 0;
macroStarts = new int[MAX_MACROS];
macroNames = new String[MAX_MACROS];
boolean isPluginsMacrosMenu = false;
if (macrosMenu != null) {
int itemCount = macrosMenu.getItemCount();
isPluginsMacrosMenu = macrosMenu == Menus.getMacrosMenu();
int baseCount = isPluginsMacrosMenu ? MACROS_MENU_COMMANDS : Editor.MACROS_MENU_ITEMS;
if (itemCount > baseCount) {
for (int i = itemCount - 1; i >= baseCount; i--) macrosMenu.remove(i);
}
}
if (pgm.hasVars() && pgm.macroCount() > 0 && pgm.getGlobals() == null)
new Interpreter().saveGlobals(pgm);
ArrayList tools = new ArrayList();
for (int i = 0; i < code.length; i++) {
token = code[i] & TOK_MASK;
if (token == MACRO) {
nextToken = code[i + 1] & TOK_MASK;
if (nextToken == STRING_CONSTANT) {
if (count == MAX_MACROS) {
if (isPluginsMacrosMenu)
IJ.error("Macro Installer", "Macro sets are limited to " + MAX_MACROS + " macros.");
break;
}
address = code[i + 1] >> TOK_SHIFT;
symbol = symbolTable[address];
name = symbol.str;
macroStarts[count] = i + 2;
macroNames[count] = name;
if (name.indexOf('-') != -1
&& (name.indexOf("Tool") != -1 || name.indexOf("tool") != -1)) {
tools.add(name);
toolCount++;
} else if (name.startsWith("AutoRun")) {
if (autoRunCount == 0 && !openingStartupMacrosInEditor) {
new MacroRunner(pgm, macroStarts[count], name, (String) null);
if (name.equals("AutoRunAndHide")) autoRunAndHideCount++;
}
autoRunCount++;
count--;
} else if (name.equals("Popup Menu")) installPopupMenu(name, pgm);
else if (!name.endsWith("Tool Selected")) {
if (macrosMenu != null) {
addShortcut(name);
int pos = name.indexOf(">");
boolean inSubMenu = name.startsWith("<") && (pos > 1);
if (inSubMenu) {
Menu parent = macrosMenu;
Menu subMenu = null;
String parentStr = name.substring(1, pos).trim();
String childStr = name.substring(pos + 1).trim();
MenuItem mnuItem = new MenuItem();
mnuItem.setActionCommand(name);
mnuItem.setLabel(childStr);
for (int jj = 0; jj < subMenus.size(); jj++) {
String aName = subMenus.get(jj).getName();
if (aName.equals(parentStr)) subMenu = subMenus.get(jj);
}
if (subMenu == null) {
subMenu = new Menu(parentStr);
subMenu.setName(parentStr);
subMenu.addActionListener(this);
subMenus.add(subMenu);
parent.add(subMenu);
}
subMenu.add(mnuItem);
} else macrosMenu.add(new MenuItem(name));
}
}
// IJ.log(count+" "+name+" "+macroStarts[count]);
count++;
}
} else if (token == EOF) break;
}
nMacros = count;
if (toolCount > 0 && (isPluginsMacrosMenu || macrosMenu == null) && installTools) {
Toolbar tb = Toolbar.getInstance();
if (toolCount == 1) tb.addMacroTool((String) tools.get(0), this);
else {
for (int i = 0; i < tools.size(); i++) {
String toolName = (String) tools.get(i);
if (toolName.startsWith("Abort Macro or Plugin") && toolCount > 6)
toolName = "Unused " + toolName;
tb.addMacroTool(toolName, this, i);
}
}
if (toolCount > 1 && Toolbar.getToolId() >= Toolbar.CUSTOM1) tb.setTool(Toolbar.RECTANGLE);
tb.repaint();
}
if (macrosMenu != null) this.instance = this;
if (shortcutsInUse != null && text != null)
IJ.showMessage(
"Install Macros",
(inUseCount == 1 ? "This keyboard shortcut is" : "These keyboard shortcuts are")
+ " already in use:"
+ shortcutsInUse);
if (nMacros == 0 && fileName != null) {
if (text == null || text.length() == 0) return;
int dotIndex = fileName.lastIndexOf('.');
if (dotIndex > 0) anonymousName = fileName.substring(0, dotIndex);
else anonymousName = fileName;
if (macrosMenu != null) macrosMenu.add(new MenuItem(anonymousName));
macroNames[0] = anonymousName;
nMacros = 1;
}
String word = nMacros == 1 ? " macro" : " macros";
if (isPluginsMacrosMenu) IJ.showStatus(nMacros + word + " installed");
}