private void initGUI() {
JPanel pCommand = new JPanel();
pResult = new JPanel();
nsSplitPane = new JSplitPane(JSplitPane.VERTICAL_SPLIT, pCommand, pResult);
pCommand.setLayout(new BorderLayout());
pResult.setLayout(new BorderLayout());
Font fFont = new Font("Dialog", Font.PLAIN, 12);
txtCommand = new JTextArea(5, 40);
txtCommand.setMargin(new Insets(5, 5, 5, 5));
txtCommand.addKeyListener(this);
txtCommandScroll = new JScrollPane(txtCommand);
txtResult = new JTextArea(20, 40);
txtResult.setMargin(new Insets(5, 5, 5, 5));
txtResultScroll = new JScrollPane(txtResult);
txtCommand.setFont(fFont);
txtResult.setFont(new Font("Courier", Font.PLAIN, 12));
/*
// button replaced by toolbar
butExecute = new JButton("Execute");
butExecute.addActionListener(this);
pCommand.add(butExecute, BorderLayout.EAST);
*/
pCommand.add(txtCommandScroll, BorderLayout.CENTER);
gResult = new GridSwing();
gResultTable = new JTable(gResult);
gScrollPane = new JScrollPane(gResultTable);
// getContentPane().setLayout(new BorderLayout());
pResult.add(gScrollPane, BorderLayout.CENTER);
// Set up the tree
rootNode = new DefaultMutableTreeNode("Connection");
treeModel = new DefaultTreeModel(rootNode);
tTree = new JTree(treeModel);
tScrollPane = new JScrollPane(tTree);
tScrollPane.setPreferredSize(new Dimension(120, 400));
tScrollPane.setMinimumSize(new Dimension(70, 100));
txtCommandScroll.setPreferredSize(new Dimension(360, 100));
txtCommandScroll.setMinimumSize(new Dimension(180, 100));
gScrollPane.setPreferredSize(new Dimension(460, 300));
ewSplitPane = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, tScrollPane, nsSplitPane);
fMain.getContentPane().add(ewSplitPane, BorderLayout.CENTER);
doLayout();
fMain.pack();
}
public DistributedTextEditor() {
area1.setFont(new Font("Monospaced", Font.PLAIN, 12));
area2.setFont(new Font("Monospaced", Font.PLAIN, 12));
((AbstractDocument) area1.getDocument()).setDocumentFilter(dec);
area2.setEditable(false);
Container content = getContentPane();
content.setLayout(new BoxLayout(content, BoxLayout.Y_AXIS));
JScrollPane scroll1 =
new JScrollPane(
area1, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
content.add(scroll1, BorderLayout.CENTER);
JScrollPane scroll2 =
new JScrollPane(
area2, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS, JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);
content.add(scroll2, BorderLayout.CENTER);
content.add(ipaddress, BorderLayout.CENTER);
content.add(portNumber, BorderLayout.CENTER);
JMenuBar JMB = new JMenuBar();
setJMenuBar(JMB);
JMenu file = new JMenu("File");
JMenu edit = new JMenu("Edit");
JMB.add(file);
JMB.add(edit);
file.add(Listen);
file.add(Connect);
file.add(Disconnect);
file.addSeparator();
file.add(Save);
file.add(SaveAs);
file.add(Quit);
edit.add(Copy);
edit.add(Paste);
edit.getItem(0).setText("Copy");
edit.getItem(1).setText("Paste");
Save.setEnabled(false);
SaveAs.setEnabled(false);
Disconnect.setEnabled(false);
setDefaultCloseOperation(EXIT_ON_CLOSE);
pack();
area1.addKeyListener(k1);
area1.addMouseListener(m1);
setTitle("Disconnected");
setVisible(true);
area1.insert("Welcome to Hjortehandlerne's distributed text editor. \n", 0);
this.addWindowListener(w1);
}
public ConsolePanel() {
super(new BorderLayout());
text.setFont(StyleContext.getDefaultStyleContext().getFont("SansSerif", Font.PLAIN, 10));
JScrollPane scroller = new JScrollPane(text);
scroller.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
add(BorderLayout.CENTER, scroller);
}
public ReplyView(MikroEventModel e, EventViewManager m) {
super();
evm = m;
textArea = new JTextArea("@" + evm.event.getAuthor() + " ", 4, 45);
Font f = new Font("Nimbus Sans L Bold", Font.PLAIN, 15);
textArea.setFont(f);
textArea.setLineWrap(true);
((AbstractDocument) textArea.getDocument()).setDocumentFilter(new DocumentSizeFilter(140));
buttonPanel = new JPanel();
submitButton = new JButton("Post");
cancelButton = new JButton("Cancel");
submitButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
evm.reply(textArea.getText());
}
});
cancelButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
evm.setEventView();
}
});
buttonPanel.setLayout(new BoxLayout(buttonPanel, BoxLayout.LINE_AXIS));
buttonPanel.add(Box.createHorizontalGlue());
buttonPanel.add(submitButton);
buttonPanel.add(Box.createHorizontalStrut(5));
buttonPanel.add(cancelButton);
this.setLayout(new BoxLayout(this, BoxLayout.PAGE_AXIS));
this.add(textArea);
this.add(buttonPanel);
}
public void setSelectedFont(Font font) {
selectedFont = font;
family = font.getFamily();
style = font.getStyle();
size = font.getSize();
preview.setFont(font);
}
public void mousePressed(MouseEvent e) {
if (e.getButton() == e.BUTTON3) {
NumberFormat nf = NumberFormat.getInstance();
nf.setMaximumFractionDigits(2);
int index = list.locationToIndex(e.getPoint());
GetImageFile gif = new GetImageFile(files[index]);
JTextArea area =
new JTextArea(
"File: "
+ gif.getImageString()
+ "\n"
+ "Score: "
+ nf.format(scores[index])
+ "\n"
+ "Pairs: "
+ nrpairs[index]);
area.setEditable(false);
area.setBorder(BorderFactory.createLineBorder(Color.black));
area.setFont(new Font("times", Font.PLAIN, 12));
PopupFactory factory = PopupFactory.getSharedInstance();
popup =
factory.getPopup(
null,
area,
(int) e.getComponent().getLocationOnScreen().getX() + e.getX() + 25,
(int) e.getComponent().getLocationOnScreen().getY() + e.getY());
popup.show();
}
}
public GeneralGUI(Whois whois) {
super("Internic Whois");
this.server = whois;
Container pane = this.getContentPane();
// whois.internic.net assumes a monospaced font, 72 columns across
Font f = new Font("Monospaced", Font.PLAIN, 12);
names.setFont(f);
names.setEditable(false);
JPanel CenterPanel = new JPanel();
CenterPanel.setLayout(new GridLayout(1, 1, 10, 10));
JScrollPane jsp = new JScrollPane(names);
CenterPanel.add(jsp);
pane.add("Center", CenterPanel);
// You don't want the buttons in the south and north
// to fill the entire sections so add Panels there
// and use FlowLayouts in the Panel
JPanel NorthPanel = new JPanel();
JPanel NorthPanelTop = new JPanel();
NorthPanelTop.setLayout(new FlowLayout(FlowLayout.LEFT));
NorthPanelTop.add(new JLabel("Whois: "));
NorthPanelTop.add("North", searchString);
NorthPanelTop.add(exactMatch);
NorthPanelTop.add(findButton);
NorthPanel.setLayout(new BorderLayout(2, 1));
NorthPanel.add("North", NorthPanelTop);
JPanel NorthPanelBottom = new JPanel();
NorthPanelBottom.setLayout(new GridLayout(1, 3, 5, 5));
NorthPanelBottom.add(initRecordType());
NorthPanelBottom.add(initSearchFields());
NorthPanelBottom.add(initServerChoice());
NorthPanel.add("Center", NorthPanelBottom);
JPanel SouthPanel = new JPanel();
pane.add("North", NorthPanel);
ActionListener al = new LookupNames();
findButton.addActionListener(al);
searchString.addActionListener(al);
}
public TestHTML() {
int d = (Frame.getFrames().length == 0) ? JFrame.EXIT_ON_CLOSE : JFrame.DISPOSE_ON_CLOSE;
JPanel pan = new JPanel();
pan.setLayout(new BorderLayout(GAP, GAP - 4));
pan.setBorder(new EmptyBorder(GAP, GAP, GAP, GAP));
pan.setBackground(COL);
pan.setFont(font);
lab = new JLabel(MSG); // , SwingConstants.CENTER);
lab.setName("title");
lab.setFont(new Font("Serif", 3, 16));
// lab.setForeground(Color.black);
pan.add(lab, "North");
text = new JTextArea("JTextArea\n");
text.setName("area");
text.setLineWrap(true);
text.setFont(font);
JScrollPane scr1 = new JScrollPane(text);
scr1.setPreferredSize(new Dimension(300, 500));
pan.add(scr1, "Center");
html = new JEditorPane();
html.setContentType("text/html");
html.setEditable(false);
html.addMouseListener(this);
html.addMouseMotionListener(this);
JScrollPane scr2 = new JScrollPane(html);
scr2.setPreferredSize(new Dimension(350, 500));
pan.add(scr2, "East");
but = new JButton("Copy text from JTextArea to JEditorPane");
but.addActionListener(this);
pan.add(but, "South");
frm = new JFrame(MSG);
frm.setContentPane(pan);
frm.setDefaultCloseOperation(d);
frm.setLocation(100, 150);
frm.pack();
frm.setVisible(true);
}
/** 创建对话框面板 */
private void createPanel() {
textArea = new JTextArea();
textArea.setEditable(false);
textArea.setFont(new Font("aFont", Font.PLAIN, 12));
receiveTxt();
JPanel panel = new JPanel();
JButton button = new JButton("确定");
panel.add(button);
add(textArea, BorderLayout.CENTER);
add(panel, BorderLayout.SOUTH);
button.addActionListener(
(ActionEvent e) -> {
setVisible(false);
});
}
public GUI() {
String[] keys = {"no Quotation found"};
if (tryDir(".") || tryDir("BLM305") || tryDir("CSE470")) keys = Q.keySet().toArray(keys);
menu = new JComboBox<String>(keys);
if (Q.size() > 0) setMessage(0);
JPanel pan = new JPanel();
pan.setLayout(new BorderLayout(GAP, GAP - 4));
pan.setBorder(new javax.swing.border.EmptyBorder(GAP, GAP, GAP, GAP));
pan.setBackground(COLOR);
pan.add(topPanel(), "North");
txt.setFont(LARGE);
txt.setEditable(false);
txt.setRows(5);
txt.setColumns(30);
txt.setWrapStyleWord(true);
txt.setLineWrap(true);
txt.setDragEnabled(true);
pan.add(new JScrollPane(txt), "Center");
ref.setFont(SMALL);
ref.setEditable(false);
ref.setColumns(35);
ref.setDragEnabled(true);
pan.add(ref, "South");
pan.setToolTipText("A project realized collectively by the class");
menu.setToolTipText("Quotation classes");
who.setToolTipText("author()+year()");
txt.setToolTipText("text()");
ref.setToolTipText("reference()");
frm.setContentPane(pan);
frm.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
frm.setLocation(scaled(120), scaled(90));
frm.pack();
frm.setVisible(true);
}
public OutputPopup(JFrame parent, AlignViewport av, Controller c, String title) {
super(parent, av, c, title);
sp = new JScrollPane();
ta = new JTextArea(10, 60);
f = new JComboBox();
ta.setFont(new Font("Courier", Font.PLAIN, 10));
format = new JLabel("Alignment format");
for (int i = 0; i < FormatProperties.getFormats().size(); i++) {
f.addItem((String) FormatProperties.getFormats().elementAt(i));
}
sp.add(ta);
gbc.fill = GridBagConstraints.BOTH;
gbc.weighty = 1.0;
add(sp, gb, gbc, 0, 0, 2, 2);
gbc.fill = GridBagConstraints.HORIZONTAL;
add(format, gb, gbc, 0, 2, 1, 1);
add(f, gb, gbc, 1, 2, 1, 1);
add(status, gb, gbc, 0, 3, 2, 2);
setApplyAction(new AreaOutputAction("area output", av, c));
pack();
Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
setLocation(
(screenSize.width - getSize().width) / 2, (screenSize.height - getSize().height) / 2);
show();
}
/* Build up the GUI using Swing magic. Nothing very exciting here - the
BagPanel class makes the code a bit cleaner/easier to read. */
private void guiInit() throws Exception {
JPanel mainPanel = new JPanel(new BorderLayout());
mainPanel.setMinimumSize(new Dimension(500, 250));
mainPanel.setPreferredSize(new Dimension(500, 300));
/* The message area */
JScrollPane mssgPanel = new JScrollPane();
mssgPanel.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
mssgPanel.setAutoscrolls(true);
mssgArea = new JTextArea();
mssgArea.setFont(new java.awt.Font("Monospaced", Font.PLAIN, 20));
mainPanel.add(mssgPanel, BorderLayout.CENTER);
mssgPanel.getViewport().add(mssgArea, null);
/* The button area */
BagPanel buttonPanel = new BagPanel();
GridBagConstraints c = buttonPanel.c;
c.fill = GridBagConstraints.HORIZONTAL;
c.gridwidth = GridBagConstraints.REMAINDER;
buttonPanel.makeLabel("Detection", JLabel.CENTER);
c.gridwidth = GridBagConstraints.RELATIVE;
detDarkCb = buttonPanel.makeCheckBox("Dark", true);
c.gridwidth = GridBagConstraints.REMAINDER;
detAccelCb = buttonPanel.makeCheckBox("Movement", false);
buttonPanel.makeSeparator(SwingConstants.HORIZONTAL);
buttonPanel.makeLabel("Theft Reports", JLabel.CENTER);
c.gridwidth = GridBagConstraints.RELATIVE;
repLedCb = buttonPanel.makeCheckBox("LED", true);
c.gridwidth = GridBagConstraints.REMAINDER;
repSirenCb = buttonPanel.makeCheckBox("Siren", false);
c.gridwidth = GridBagConstraints.RELATIVE;
repServerCb = buttonPanel.makeCheckBox("Server", false);
c.gridwidth = GridBagConstraints.REMAINDER;
repNeighboursCb = buttonPanel.makeCheckBox("Neighbours", false);
buttonPanel.makeSeparator(SwingConstants.HORIZONTAL);
buttonPanel.makeLabel("Interval", JLabel.CENTER);
fieldInterval = buttonPanel.makeTextField(10, null);
fieldInterval.setText(Integer.toString(Constants.DEFAULT_CHECK_INTERVAL));
ActionListener settingsAction =
new ActionListener() {
public void actionPerformed(ActionEvent e) {
updateSettings();
}
};
buttonPanel.makeButton("Update", settingsAction);
mainPanel.add(buttonPanel, BorderLayout.EAST);
/* The frame part */
frame = new JFrame("AntiTheft");
frame.setSize(mainPanel.getPreferredSize());
frame.getContentPane().add(mainPanel);
frame.setVisible(true);
frame.addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent e) {
System.exit(0);
}
});
}
private void createUI() {
setTitle(strings.getString("window.title"));
setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
mailBodyArea = new JTextArea(20, 70);
mailBodyArea.setLineWrap(true);
mailBodyArea.setWrapStyleWord(true);
mailBodyArea.setFont(new Font("monospaced", Font.PLAIN, 12));
scrollPane = new JScrollPane(mailBodyArea);
mailSubjectField = new JTextField(20);
mailToField = new JTextField(20);
mailFromField = new JTextField(20);
mailSubjectLabel = new JLabel(strings.getString("subject.label"));
mailToLabel = new JLabel(strings.getString("to.label"));
setToFieldEditable(false);
toLabelListener =
new MouseAdapter() {
public void mouseClicked(MouseEvent e) {
mouseClicked_searchSource();
}
public void mouseEntered(MouseEvent e) {
setCursor(new Cursor(Cursor.HAND_CURSOR));
}
public void mouseExited(MouseEvent e) {
setCursor(new Cursor(Cursor.DEFAULT_CURSOR));
}
};
mailFromLabel = new JLabel(strings.getString("from.label"));
sendMailButton = new JButton(strings.getString("sendmail.text"));
sendMailButton.setIcon(
new ImageIcon(getClass().getResource(strings.getString("sendmail.icon"))));
sendMailButton.setToolTipText(strings.getString("sendmail.tooltip"));
cancelButton = new JButton(strings.getString("cancel.text"));
cancelButton.setIcon(new ImageIcon(getClass().getResource(strings.getString("cancel.icon"))));
cancelButton.setToolTipText(strings.getString("cancel.tooltip"));
cancelButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
actionPerformed_cancel();
}
});
sendMailButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
actionPerformed_sendMail();
}
});
Container pane = this.getContentPane();
container.setLayout(gridbag);
c.fill = GridBagConstraints.HORIZONTAL;
c.insets = new Insets(5, 5, 0, 5);
c.gridx = 0;
c.gridy = 0;
c.anchor = GridBagConstraints.EAST;
pane.add(mailFromLabel, c);
c.gridx = 1;
pane.add(mailFromField, c);
c.gridx = 0;
c.gridy = 1;
pane.add(mailToLabel, c);
c.gridx = 1;
pane.add(mailToField, c);
c.gridx = 0;
c.gridy = 2;
pane.add(mailSubjectLabel, c);
c.gridx = 1;
pane.add(mailSubjectField, c);
c.gridx = 0;
c.gridy = 3;
c.gridwidth = 2;
pane.add(scrollPane, c);
JPanel bPane = new JPanel();
bPane.add(sendMailButton);
bPane.add(cancelButton);
c.gridx = 0;
c.gridy = 4;
pane.add(bPane, c);
mailToField.requestFocus();
}
public IRCBOT(boolean uList, String channel, int chatNum) {
// chatter = new ChatDisplay("<html><body bgcolor='black'><table border=0pt width=100%>");
winNum = chatNum;
URL iconURL = getClass().getResource("P_300x300.png");
ImageIcon icon = new ImageIcon(iconURL);
setIconImage(icon.getImage());
Action doNothing =
new AbstractAction() {
@Override
public void actionPerformed(ActionEvent e) {}
};
channelName = channel;
standardWindow = uList;
chatInput = new JTextArea(4, 55);
chatInput.setWrapStyleWord(true);
chatInput.setLineWrap(true);
chatInput.getInputMap().put(KeyStroke.getKeyStroke("ENTER"), "doNothing");
chatScreen = new JTextPane();
chatScreen.setContentType("text/html");
chatScreen.setEditorKit(kit);
chatScreen.setDocument(doc);
userList = new JTextPane();
registeredUserList = new JTextPane();
sendButton = new JButton("SEND");
g_start = new JButton("START");
g_end = new JButton("END");
g_reroll = new JButton("secret");
JLabel l_giveaway = new JLabel("Giveaway", JLabel.CENTER);
JLabel l_chat = new JLabel("Chat", JLabel.CENTER);
JLabel l_uList = new JLabel("User List", JLabel.CENTER);
sendButton.addActionListener(this);
g_start.addActionListener(this);
g_end.addActionListener(this);
g_reroll.addActionListener(this);
g_start.setEnabled(false); // disabled for basic irc client
g_end.setEnabled(false);
g_reroll.setEnabled(false);
// String start = "<html><body>";
Dimension min = new Dimension(100, 1);
Dimension pref = new Dimension(150, 1);
Dimension max = new Dimension(600, 600);
// chatScreen.setMinimumSize(min);
// userList.setMinimumSize(min);
// chatInput.addKeyListener(KeyBoardListener);
JPanel mainPanel = new JPanel(new BorderLayout(5, 5));
JPanel left = new JPanel(new BorderLayout(5, 5));
JPanel mid = new JPanel(new BorderLayout(5, 5));
JPanel right = new JPanel(new BorderLayout(5, 5));
JPanel giveaway_buttons = new JPanel(new BorderLayout(5, 5));
JPanel sendBar = new JPanel();
scrollChat = new JScrollPane(chatScreen);
JScrollPane scrollChatInput = new JScrollPane(chatInput);
userListScroll = new JScrollPane(userList);
JScrollPane regUserListScroll = new JScrollPane(registeredUserList);
userListScroll.setMinimumSize(min);
// userListScroll.setPreferredSize(pref);
// userListScroll.setMaximumSize(new Dimension(800,600));
// userListScroll.setPreferredSize(new Dimension(100,100));
// scrollChat.setPreferredSize(pref);
scrollChat.setMinimumSize(min);
// scrollChat.setMaximumSize(new Dimension(500,500));
regUserListScroll.setPreferredSize(pref);
mid.add(l_chat, BorderLayout.NORTH);
mid.add(scrollChat, BorderLayout.CENTER);
right.add(l_uList, BorderLayout.NORTH);
right.add(userListScroll, BorderLayout.CENTER);
giveaway_buttons.add(g_start, BorderLayout.WEST);
giveaway_buttons.add(g_end, BorderLayout.CENTER);
giveaway_buttons.add(g_reroll, BorderLayout.PAGE_END);
left.add(giveaway_buttons, BorderLayout.PAGE_END);
JSplitPane chat_userList = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT, mid, right);
chat_userList.setOneTouchExpandable(true);
chat_userList.setDividerLocation(500);
chat_userList.setResizeWeight(0.5);
chat_userList.setContinuousLayout(true);
// chat_userList.setPreferredSize(new Dimension(100,100));
chat_userList.setMinimumSize(min);
// chat_userList.setMaximumSize(max);
userListScroll.setHorizontalScrollBarPolicy(HORIZONTAL_SCROLLBAR_NEVER);
// scroll.add(chatScreen);
sendBar.add(scrollChatInput);
sendBar.add(sendButton);
if (standardWindow) {
mainPanel.add(chat_userList, BorderLayout.CENTER);
mainPanel.add(sendBar, BorderLayout.PAGE_END);
JMenuBar menuBar = new JMenuBar();
JMenu fileMenu = new JMenu("File");
settings = new JMenuItem("Settings");
settings.addActionListener(this);
fileMenu.add(settings);
menuBar.add(fileMenu);
left.add(l_giveaway, BorderLayout.NORTH);
left.add(regUserListScroll, BorderLayout.CENTER);
// left.setBorder(new EmptyBorder(0,5,0,0));
// chat_userList.setBorder(new EtchedBorder(0,0,0,5));
mainPanel.add(left, BorderLayout.WEST);
mainPanel.add(menuBar, BorderLayout.PAGE_START);
// mainPanel.setBorder(new EmptyBorder(0,10,10,10));
} else {
mainPanel.add(scrollChat, BorderLayout.CENTER);
}
registeredUserList.setEditable(false);
userList.setEditable(false);
chatScreen.setEditable(false);
registeredUserList.setFont(new Font("Courier New", Font.PLAIN, 12));
chatScreen.setFont(new Font("Courier New", Font.PLAIN, 12));
chatInput.setFont(new Font("Courier New", Font.PLAIN, 12));
getContentPane().add(mainPanel);
setSize(800, 500);
setVisible(true);
setResizable(true);
setLocationRelativeTo(null);
setTitle("IRC Chatter");
setMinimumSize(new Dimension(500, 200));
addWindowListener(
new WindowAdapter() {
@Override
public void windowClosing(WindowEvent e) {
// System.out.println("\n\n\n\n\n\\n\nCLOSEDWINDOW\n\n\n\n\n\n\n\n");
if (sock.isSafe() == true) sock.outputText("PART " + channelName + "\r\n");
// System.out.println("\n\n\n\n\n\\n\nCLOSEDWINDOW\n\n\n\n\n\n\n\n");
}
});
chatInput.addKeyListener(this);
chatInput.requestFocus();
}
/** Constructs the <tt>LoginWindow</tt>. */
private void init() {
String title;
if (windowTitle != null) title = windowTitle;
else
title =
DesktopUtilActivator.getResources()
.getI18NString("service.gui.AUTHENTICATION_WINDOW_TITLE", new String[] {server});
String text;
if (windowText != null) text = windowText;
else
text =
DesktopUtilActivator.getResources()
.getI18NString("service.gui.AUTHENTICATION_REQUESTED_SERVER", new String[] {server});
String uinText;
if (usernameLabelText != null) uinText = usernameLabelText;
else uinText = DesktopUtilActivator.getResources().getI18NString("service.gui.IDENTIFIER");
String passText;
if (passwordLabelText != null) passText = passwordLabelText;
else passText = DesktopUtilActivator.getResources().getI18NString("service.gui.PASSWORD");
setTitle(title);
infoTextArea.setEditable(false);
infoTextArea.setOpaque(false);
infoTextArea.setLineWrap(true);
infoTextArea.setWrapStyleWord(true);
infoTextArea.setFont(infoTextArea.getFont().deriveFont(Font.BOLD));
infoTextArea.setText(text);
infoTextArea.setAlignmentX(0.5f);
JLabel uinLabel = new JLabel(uinText);
uinLabel.setFont(uinLabel.getFont().deriveFont(Font.BOLD));
JLabel passwdLabel = new JLabel(passText);
passwdLabel.setFont(passwdLabel.getFont().deriveFont(Font.BOLD));
TransparentPanel labelsPanel = new TransparentPanel(new GridLayout(0, 1, 8, 8));
labelsPanel.add(uinLabel);
labelsPanel.add(passwdLabel);
TransparentPanel textFieldsPanel = new TransparentPanel(new GridLayout(0, 1, 8, 8));
textFieldsPanel.add(uinValue);
textFieldsPanel.add(passwdField);
JPanel southFieldsPanel = new TransparentPanel(new GridLayout(1, 2));
this.rememberPassCheckBox.setOpaque(false);
this.rememberPassCheckBox.setBorder(null);
southFieldsPanel.add(rememberPassCheckBox);
if (signupLink != null && signupLink.length() > 0)
southFieldsPanel.add(
createWebSignupLabel(
DesktopUtilActivator.getResources().getI18NString("plugin.simpleaccregwizz.SIGNUP"),
signupLink));
else southFieldsPanel.add(new JLabel());
boolean allowRememberPassword = true;
String allowRemPassStr =
DesktopUtilActivator.getResources().getSettingsString(PNAME_ALLOW_SAVE_PASSWORD);
if (allowRemPassStr != null) {
allowRememberPassword = Boolean.parseBoolean(allowRemPassStr);
}
allowRememberPassword =
DesktopUtilActivator.getConfigurationService()
.getBoolean(PNAME_ALLOW_SAVE_PASSWORD, allowRememberPassword);
setAllowSavePassword(allowRememberPassword);
JPanel buttonPanel = new TransparentPanel(new FlowLayout(FlowLayout.CENTER));
buttonPanel.add(loginButton);
buttonPanel.add(cancelButton);
JPanel southEastPanel = new TransparentPanel(new BorderLayout());
southEastPanel.add(buttonPanel, BorderLayout.EAST);
TransparentPanel mainPanel = new TransparentPanel(new BorderLayout(10, 10));
mainPanel.setBorder(BorderFactory.createEmptyBorder(20, 0, 20, 20));
JPanel mainFieldsPanel = new TransparentPanel(new BorderLayout(0, 10));
mainFieldsPanel.add(labelsPanel, BorderLayout.WEST);
mainFieldsPanel.add(textFieldsPanel, BorderLayout.CENTER);
mainFieldsPanel.add(southFieldsPanel, BorderLayout.SOUTH);
mainPanel.add(infoTextArea, BorderLayout.NORTH);
mainPanel.add(mainFieldsPanel, BorderLayout.CENTER);
mainPanel.add(southEastPanel, BorderLayout.SOUTH);
this.getContentPane().add(mainPanel, BorderLayout.EAST);
this.loginButton.setName("ok");
this.cancelButton.setName("cancel");
if (loginButton.getPreferredSize().width > cancelButton.getPreferredSize().width)
cancelButton.setPreferredSize(loginButton.getPreferredSize());
else loginButton.setPreferredSize(cancelButton.getPreferredSize());
this.loginButton.setMnemonic(
DesktopUtilActivator.getResources().getI18nMnemonic("service.gui.OK"));
this.cancelButton.setMnemonic(
DesktopUtilActivator.getResources().getI18nMnemonic("service.gui.CANCEL"));
this.loginButton.addActionListener(this);
this.cancelButton.addActionListener(this);
this.getRootPane().setDefaultButton(loginButton);
}
public static void makescalaSciCodeFromParams(int odeSolveMethod) {
switch (odeSolveMethod) {
case ODEWizardScalaSci.ODErke:
scriptText =
" import scala._ \n import scalaSci._ \n import scalaSci.Vec._ \n"
+ " import scalaSci.Mat._ \n import java.util.Vector \n"
+ " import numal._ \n import scalaSci.math.plot.plot._ \n";
scriptText +=
" \n var n= "
+ systemOrder
+ "; // the number of equations of the system\n"
+ "var x = new Array[Double](1) // entry: x(0) is the initial value of the independent variable \n"
+ "var xe = new Array[Double](1) // entry: xe(0) is the final value of the independent variable \n"
+ "var y = new Array[Double](n+1) // entry: the dependent variable, the initial values at x = x0 \n"
+ "var data = new Array[Double](7) // in array data one should give: \n"
+ " // data(1): the relative tolerance \n"
+ " // data(2): the absolute tolerance \n"
+ " // after each step data(3:6) contains: \n"
+ " // data(3): the steplength used for the last step \n"
+ " // data(4): the number of integration steps performed \n"
+ " // data(5): the number of integration steps rejected \n "
+ " // data(6): the number of integration steps skipped \n"
+ " // if upon completion of rke data(6) > 0, then results should be considered most criticallly \n"
+ " fi = true; // if fi is true then the integration starts at x0 with a trial step xe-x0; \n"
+ " // if fi is false then the integration is continued with a step length data(3)* sign(xe-x0) \n"
+ "data(1) = 1.0e-6; data(2) = 1.0e-6; \n\n"
+ "var xOut:Vector[Array[Double]] = new Vector(); \n"
+ "var yOut:Vector[Array[Double]] = new Vector(); \n"
+ "// a Java class that implements the AP_rke_methods interface should be specified \n"
+ "// The AP_rke_methods interface requires the implementation of two procedures: \n"
+ "// void der(int n, double t, double v[]) \n"
+ "// this procedure performs an evaluation of the right-hand side of the system with dependent variable v[1:n] and \n"
+ "// and independent variable t; upon completion of der the right-hand side should be overwritten on v[1:n] \n"
+ "// void out(int n, double x[], double xe[], double y[], double data[]) \n"
+ "// after each integration step performed, out can be used to obtain information from the solution process, \n"
+ "// e.g., the values of x, y[1:n], and data[3:6]; out can also be used to update data, but x and xe remain unchanged \n\n";
scriptText +=
"\n var xStart = "
+ xStart
+ ";"
+ "\n var xEnd = "
+ xEnd
+ "; // start and end values of integration \n \n";
for (int k = 1; k <= systemOrder; k++)
scriptText += "y(" + k + ") = " + Math.random() + "; \n";
scriptText += " x(0) = xStart; \n xe(0) = xEnd; \n";
scriptText +=
"var javaClassName = "
+ "\""
+ editingClassName
+ "\""
+ "; // name of the Java class that implements the ODE \n";
scriptText +=
"\n var invocationObject = Class.forName(javaClassName, false, GlobalValues.globalInterpreter.classLoader).newInstance(); \n"
+ "\n var lorenz2RKEObject = invocationObject.asInstanceOf[AP_rke_methods] \n";
scriptText += "tic() \n";
scriptText += "var fi = true \n";
scriptText +=
"\nAnalytic_problems.rke(x, xe, n, y, lorenz2RKEObject, data, fi, xOut, yOut); \n"
+ "\n var timeCompute = toc() \n";
scriptText +=
"var plotTitle = \"Lorenz attractor in ScalaSci, time = \"+timeCompute+ \" Runge-Kutta (rke()), integrating from \"+xStart+\", to tEnd= \"+xEnd \n";
scriptText += "var color = Color.RED \n";
scriptText += " figure3d(1); plotV(yOut, color, plotTitle) \n";
break;
case ODEWizardScalaSci.ODEmultistep:
scriptText =
" import scala._ \n import scalaSci._ \n import scalaSci.Vec._ \n import scalaSci.Mat._ \n "
+ "import java.util.Vector \n import numal._ \n import scalaSci.math.plot.plot._\n";
scriptText +=
"\n var n= "
+ systemOrder
+ "; // the number of equations of the system \n"
+ "var first = new Array[Boolean](1); // if first is true then the procedure starts the integration with a first order Adams method \n"
+ "// and a steplength equal to hmin, upon completion of a call, first is set to false \n"
+ "first(0)=true; \n"
+ "var btmp = new Array[Boolean](2) \n"
+ "var itmp = new Array[Int](3) \n"
+ "var xtmp = new Array[Double](7) \n"
+ "var x = new Array[Double](1) \n"
+ "var y = new Array[Double](6*n+1) \n"
+ "var ymax = new Array[Double](4) \n"
+ "var save = new Array[Double](6*n+39) // in this array the procedure stores information which can be used in a continuing call \n"
+ " // with first = false; also the following messages are delivered: \n"
+ " // save[38] == 0; an Adams method has been used \n"
+ " // save[38] == 1; the procedure switched to Gear's method \n"
+ " // save[37] == 0; no error message \n"
+ " // save[37] == 1; with the hmin specified the procedure cannot handle the nonlinearity (decrease hmin!) \n"
+ " // save[36] ; number of times that the requested local error bound was exceeded \n"
+ " // save[35] ; if save[36] is nonzero then save[35] gives an estimate of the maximal local error bound, otherwise save[35]=0 \n\n"
+ "\n var jac = Array.ofDim[Double](n+1) \n"
+ "var k=0; while (k<=n) { jac(k) = new Array[Double](n+1); k += 1; } \n"
+ "var xOut:Vector[Array[Double]] = new Vector() \n"
+ "var yOut:Vector[Array[Double]] = new Vector() \n"
+ "var hmin=1.0e-10; var eps=1.0e-9 \n"
+ "\n y(1)=0.12; y(2)=0.3; y(3)=0.12; \n"
+ "ymax(1) = 0.00001; ymax(2) = 0.00001; ymax(3) = 0.00001; var tstart = 0.0; x(0) = tstart \n"
+ "var xendDefault =\"100.0\" // end point of integration, default value \n"
+ "var prompt = \"Specify the end integration value\" \n"
+ "var inVal = JOptionPane.showInputDialog(prompt, xendDefault) \n"
+ "var tend = inVal.toDouble \n";
scriptText +=
"var javaClassName = "
+ "\""
+ editingClassName
+ "\""
+ "; // name of the Java class that implements the ODE \n";
scriptText +=
"\n var invocationObject = Class.forName(javaClassName, false, GlobalValues.globalInterpreter.classLoader).newInstance(); \n";
scriptText +=
"\n var multistepObject = invocationObject.asInstanceOf[AP_multistep_methods] \n";
scriptText +=
"\ntic() \n"
+ "\nAnalytic_problems.multistep(x, tend,y,hmin,5,ymax,eps,first, save, multistepObject, jac, true,n,btmp,itmp,xtmp, xOut, yOut) \n"
+ "var runTime = toc() \n"
+ "var plotTitle = \"Lorenz system, method Multistep, ntegratin from \"+tstart+\", to tEnd= \"+tend+\", runTime = \"+runTime \n";
scriptText += "var color = Color.RED \n figure3d(1); plotV(yOut, color, plotTitle) ";
break;
case ODEWizardScalaSci.ODEdiffsys:
scriptText =
" import scala._ \n import scalaSci._ \n import scalaSci.Vec._ \n "
+ "import scalaSci.Mat._ \n import java.util.Vector \n import numal._ \n import scalaSci.math.plot.plot._ \n";
scriptText +=
"var tol = 0.0000000000004 \n var aeta = tol; var reta = tol\n "
+ "var n = 3; // the number of equations of the system \n"
+ "var x = new Array[Double](1) // entry: x(0) is the initial value of the independent variable \n"
+ "var y = new Array[Double](n+1) // entry: the dependent variable, the initial values at x = x0 \n"
+ "aeta = tol // aeta: required absolute precision in the integration process \n"
+ "reta = tol // reta: required relative precision in the integration process \n"
+ "var s = new Array[Double](n+1) \n"
+ "var h0=0.000001 // h0: the initial step to be taken \n"
+ "var xOut:Vector[Array[Double]] = new Vector() \n"
+ "var yOut:Vector[Array[Double]] = new Vector() \n"
+ "y(1)=0.4; y(2)= -0.3; y(3)=0.9; \n"
+ "\n x(0)=0; var xe = 720; \n"
+ "\nvar javaClassName = "
+ "\""
+ editingClassName
+ "\""
+ "; // name of the Java class that implements the ODE \n";
scriptText +=
"\n var invocationObject = Class.forName(javaClassName, false, GlobalValues.globalInterpreter.classLoader).newInstance(); \n"
+ "var diffSysObject = invocationObject.asInstanceOf[AP_diffsys_methods] \n"
+ "\n tic() \n"
+ "Analytic_problems.diffsys(x, xe, n, y, diffSysObject, aeta, reta , s, h0, xOut, yOut) \n"
+ "var timeCompute = toc() \n"
+ "var plotTitle = \"Double Scroll attractor with ScalaSci, time \"+timeCompute+ \" end point = \"+xe \n"
+ "var color = Color.RED \n"
+ " figure3d(1); plotV(yOut, color, plotTitle); \n";
break;
default:
scriptText = "";
}
scriptTextArea.setFont(new Font("Arial", Font.PLAIN, 12));
scriptTextArea.setRows(30);
scriptTextArea.setText(scriptText);
scriptPanel = new JPanel();
scriptScrollPane = new JScrollPane(scriptTextArea);
scriptPanel.add(scriptScrollPane);
JButton scriptSaveButton = new JButton("Save Script Code");
scriptSaveButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String currentWorkingDirectory = GlobalValues.ScalaSciClassPath;
JFileChooser chooser = new JFileChooser(currentWorkingDirectory);
chooser.setSelectedFile(new File(editingClassName + ".gsci"));
int ret = chooser.showSaveDialog(ODEWizardScalaSci.scriptFrame);
if (ret != JFileChooser.APPROVE_OPTION) {
return;
}
File f = chooser.getSelectedFile();
try {
PrintWriter out = new PrintWriter(f);
String scriptCodeText = scriptTextArea.getText();
out.write(scriptCodeText);
out.close();
} catch (java.io.FileNotFoundException enf) {
System.out.println("File " + f.getName() + " not found");
enf.printStackTrace();
}
}
});
JButton scriptRunButton = new JButton("Run Script Code");
scriptRunButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
GlobalValues.scalalabMainFrame.scalalabConsole.interpretLine(scriptText + "\n");
}
});
JPanel buttonsPanel = new JPanel();
buttonsPanel.add(scriptSaveButton);
buttonsPanel.add(scriptRunButton);
ODEWizardScalaSciScala.scriptFrame = new JFrame("Your script code");
ODEWizardScalaSciScala.scriptFrame.setLayout(new BorderLayout());
ODEWizardScalaSciScala.scriptFrame.add(scriptPanel, BorderLayout.CENTER);
ODEWizardScalaSciScala.scriptFrame.add(buttonsPanel, BorderLayout.SOUTH);
ODEWizardScalaSciScala.scriptFrame.setSize(
GlobalValues.figFrameSizeX, GlobalValues.figFrameSizeY);
ODEWizardScalaSciScala.scriptFrame.setVisible(true);
}
public ODEWizardScalaSci() {
editingClassName = "Lorenz";
systemOrder = 3; // the order of ODE system
copyTemplateButton =
new JButton("1. Copy and Edit Template", new ImageIcon("/scalaLab.jar/yellow-ball.gif"));
generateEditingButton = new JButton("2. Generate Java Class", new ImageIcon("./blue-ball.gif"));
saveJavaClassButton =
new JButton("3. Save Java Class", new ImageIcon("scalaLab.jar/red-ball.gif"));
compileJavaClassButton =
new JButton("4.a. Java Compile - External Compiler", new ImageIcon("blue-ball.gif"));
compileJavaInternalCompilerButton =
new JButton("4.b. Java Compile - Internal Compiler", new ImageIcon("blue-ball.gif"));
generateScriptCodeButton =
new JButton("Generate scalaSci Script", new ImageIcon("red-ball.gif"));
ODEWizardFrame = new JFrame("ODE Wizard for scalaSci with Java implementation of. ODEs");
editPanel = new JPanel();
editPanel.setLayout(new GridLayout(1, 2));
paramPanel = new JPanel(new GridLayout(1, 4));
availODEMethods.add("ODErke");
availODEMethods.add("ODEmultistep");
availODEMethods.add("ODEdiffsys");
ODEselectMethodLabel = new JLabel("ODE method: ");
ODEselectMethodComboBox = new JComboBox(availODEMethods);
ODEselectMethodComboBox.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
ODESolveMethod = ODEselectMethodComboBox.getSelectedIndex();
updateTemplateText();
templateTextArea.setText(templateText);
currentlySelectedLabel.setText(
"Selected Method: " + (String) availODEMethods.get(ODESolveMethod));
}
});
JLabel javaFileTextLabel = new JLabel("Java File Name: ");
javaFileTextBox = new JTextField(editingClassName);
javaFileTextBox.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
editingClassName = javaFileTextBox.getText();
String updatedStatusText = prepareStatusText();
statusAreaTop.setText(updatedStatusText);
}
});
JLabel systemOrderLabel = new JLabel("System order: ");
systemOrderText = new JTextField(String.valueOf(systemOrder));
systemOrderText.addActionListener(new editSystemOrder());
JPanel javaFilePanel = new JPanel();
javaFilePanel.add(javaFileTextLabel);
javaFilePanel.add(javaFileTextBox);
JPanel systemOrderPanel = new JPanel();
systemOrderPanel.add(systemOrderLabel);
systemOrderPanel.add(systemOrderText);
paramMethodPanel = new JPanel();
paramMethodPanel.add(ODEselectMethodLabel);
paramMethodPanel.add(ODEselectMethodComboBox);
paramPanel.add(paramMethodPanel);
paramPanel.add(javaFilePanel);
paramPanel.add(systemOrderPanel);
currentlySelectedLabel =
new JLabel("Selected Method: " + (String) availODEMethods.get(ODESolveMethod));
paramPanel.add(currentlySelectedLabel);
statusPanel = new JPanel(new GridLayout(2, 1));
statusAreaTop = new JTextArea();
statusAreaTop.setFont(new Font("Arial", Font.BOLD, 16));
String statusText = prepareStatusText();
statusAreaTop.setText(statusText);
statusAreaBottom = new JTextArea();
statusAreaBottom.setText(
"Step1: Copy and edit the template ODE (implements the famous Lorenz chaotic system),\n"
+ "Then set the name of your Java Class (instead of \"Lorenz\"), without the extension .java\n"
+ "Also set the proper order (i.e. number of equations and variables) of your system. ");
statusPanel.add(statusAreaTop);
statusPanel.add(statusAreaBottom);
templateTextArea = new JTextArea();
updateTemplateText();
templateTextArea.setFont(new Font("Arial", Font.ITALIC, 12));
templateTextArea.setText(templateText);
templateScrollPane = new JScrollPane();
templateViewPort = templateScrollPane.getViewport();
templateViewPort.add(templateTextArea);
ODEWizardTextArea = new JTextArea();
ODEWizardText = "";
ODEWizardTextArea.setText(ODEWizardText);
ODEWizardTextArea.setFont(new Font("Arial", Font.BOLD, 12));
ODEWizardScrollPane = new JScrollPane();
wizardViewPort = ODEWizardScrollPane.getViewport();
wizardViewPort.add(ODEWizardTextArea);
editPanel.add(ODEWizardScrollPane);
editPanel.add(templateScrollPane);
// Step 1: copy template of ODE implementation from the
// templateTextArea to ODEWizardTextArea
copyTemplateButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
ODEWizardTextArea.setText(templateTextArea.getText());
generateEditingButton.setEnabled(true);
statusAreaBottom.setText(
"Step2: If you have implemented correctly your ODE, the wizard completes the ready to compile Java class");
}
});
// Step 2: generate Java Class from template
JPanel buttonPanel = new JPanel();
generateEditingButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String editingODE = ODEWizardTextArea.getText();
String classImplementationString = // "package javaPluggins; \n"+
"import numal.*; \n\n"
+ "public class "
+ editingClassName
+ " extends Object \n implements "
+ implementingInterfaces[ODESolveMethod]
+ " \n \n "
+ "{ \n";
classImplementationString += (editingODE + "}\n");
ODEWizardTextArea.setText(classImplementationString);
saveJavaClassButton.setEnabled(true);
statusAreaBottom.setText(
"Step3: The generated Java source is ready, you can check it, and then proceed to save.");
}
});
// Step 3: save generated Java Class on disk
saveJavaClassButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String currentWorkingDirectory = Directory.Current().get().path();
JFileChooser chooser = new JFileChooser(currentWorkingDirectory);
chooser.setSelectedFile(new File(editingClassName + ".java"));
int ret = chooser.showSaveDialog(ODEWizardFrame);
if (ret != JFileChooser.APPROVE_OPTION) {
return;
}
File f = chooser.getSelectedFile();
try {
PrintWriter out = new PrintWriter(f);
String javaCodeText = ODEWizardTextArea.getText();
out.write(javaCodeText);
out.close();
// update the notion of the working directory
String fullPathOfSavedFile = f.getAbsolutePath();
GlobalValues.workingDir =
fullPathOfSavedFile.substring(
0, fullPathOfSavedFile.lastIndexOf(File.separatorChar) + 1);
compileJavaClassButton.setEnabled(true);
compileJavaInternalCompilerButton.setEnabled(true);
statusAreaBottom.setText(
"Step4: The Java source file was saved to disk, \n "
+ "you can proceed to compile and load the corresponding class file");
} catch (java.io.FileNotFoundException enf) {
System.out.println("File " + f.getName() + " not found");
enf.printStackTrace();
} catch (Exception eOther) {
System.out.println("Exception trying to create PrintWriter");
eOther.printStackTrace();
}
}
});
// Step 4: Compile the generated Java class
compileJavaClassButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
String currentWorkingDirectory = GlobalValues.workingDir;
JFileChooser chooser = new JFileChooser(currentWorkingDirectory);
int ret = chooser.showOpenDialog(ODEWizardFrame);
if (ret != JFileChooser.APPROVE_OPTION) {
return;
}
File f = chooser.getSelectedFile();
String javaFile = null;
try {
javaFile = f.getCanonicalPath();
} catch (IOException ex) {
System.out.println("I/O Exception in getCanonicalPath");
ex.printStackTrace();
}
// extract the path specification of the generated Java class that implements the ODE
// solution method,
// in order to update the ScalaSci class path
String SelectedFileWithPath = f.getAbsolutePath();
String SelectedFilePathOnly =
SelectedFileWithPath.substring(
0, SelectedFileWithPath.lastIndexOf(File.separatorChar));
if (GlobalValues.ScalaSciClassPath.length() == 0) GlobalValues.ScalaSciClassPath = ".";
if (GlobalValues.ScalaSciClassPath.indexOf(SelectedFilePathOnly) == -1) {
GlobalValues.ScalaSciClassPathComponents.add(0, SelectedFilePathOnly);
GlobalValues.ScalaSciClassPath =
GlobalValues.ScalaSciClassPath + File.pathSeparator + SelectedFilePathOnly;
}
// update also the ScalaSciClassPath property
StringBuilder fileStr = new StringBuilder();
Enumeration enumDirs = GlobalValues.ScalaSciClassPathComponents.elements();
while (enumDirs.hasMoreElements()) {
Object ce = enumDirs.nextElement();
fileStr.append(File.pathSeparator + (String) ce);
}
GlobalValues.settings.setProperty("ScalaSciClassPath", fileStr.toString());
ClassLoader parentClassLoader = getClass().getClassLoader();
GlobalValues.extensionClassLoader =
new ExtensionClassLoader(GlobalValues.ScalaSciClassPath, parentClassLoader);
// update GUI components to account for the updated ScalaSci classpath
scalaExec.scalaLab.scalaLab.updateTree();
boolean compilationSucccess = true;
String tempFileName = "";
tempFileName =
javaFile + ".java"; // public classes and Java files should have the same name
String[] command = new String[6];
command[0] = "javac";
command[1] = "-cp";
command[2] = GlobalValues.jarFilePath + File.pathSeparator + GlobalValues.homeDir;
command[3] = "-d"; // where to place output class files
command[4] = SelectedFilePathOnly; // the path to save the compiled class files
command[5] = javaFile; // full filename to compile
String compileCommandString =
command[0]
+ " "
+ command[1]
+ " "
+ command[2]
+ " "
+ command[3]
+ " "
+ command[4]
+ " "
+ command[5];
System.out.println("compileCommand Java= " + compileCommandString);
try {
Runtime rt = Runtime.getRuntime();
Process javaProcess = rt.exec(command);
// an error message?
StreamGobbler errorGobbler = new StreamGobbler(javaProcess.getErrorStream(), "ERROR");
// any output?
StreamGobbler outputGobbler =
new StreamGobbler(javaProcess.getInputStream(), "OUTPUT");
// kick them off
errorGobbler.start();
outputGobbler.start();
// any error???
javaProcess.waitFor();
int rv = javaProcess.exitValue();
String commandString = command[0] + " " + command[1] + " " + command[2];
if (rv == 0) {
System.out.println("Process: " + commandString + " exited successfully ");
generateScriptCodeButton.setEnabled(true);
statusAreaBottom.setText(
"Step5: You can proceed now to create a draft script that utilizes your Java-based ODE integrator");
} else
System.out.println(
"Process: " + commandString + " exited with error, error value = " + rv);
} catch (IOException exio) {
System.out.println("IOException trying to executing " + command);
exio.printStackTrace();
} catch (InterruptedException ie) {
System.out.println("Interrupted Exception trying to executing " + command);
ie.printStackTrace();
}
}
});
// Compile with the internal compiler
compileJavaInternalCompilerButton.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
String currentWorkingDirectory = GlobalValues.workingDir;
JFileChooser chooser = new JFileChooser(currentWorkingDirectory);
int ret = chooser.showOpenDialog(ODEWizardFrame);
if (ret != JFileChooser.APPROVE_OPTION) {
return;
}
File f = chooser.getSelectedFile();
String javaFile = null;
try {
javaFile = f.getCanonicalPath();
} catch (IOException ex) {
System.out.println("I/O Exception in getCanonicalPath");
ex.printStackTrace();
}
// extract the path specification of the generated Java class that implements the ODE
// solution method,
// in order to update the ScalaSci class path
String SelectedFileWithPath = f.getAbsolutePath();
String SelectedFilePathOnly =
SelectedFileWithPath.substring(
0, SelectedFileWithPath.lastIndexOf(File.separatorChar));
if (GlobalValues.ScalaSciClassPath.length() == 0) GlobalValues.ScalaSciClassPath = ".";
if (GlobalValues.ScalaSciClassPath.indexOf(SelectedFilePathOnly) == -1) {
GlobalValues.ScalaSciClassPathComponents.add(0, SelectedFilePathOnly);
GlobalValues.ScalaSciClassPath =
GlobalValues.ScalaSciClassPath + File.pathSeparator + SelectedFilePathOnly;
}
// update also the ScalaSciClassPath property
StringBuilder fileStr = new StringBuilder();
Enumeration enumDirs = GlobalValues.ScalaSciClassPathComponents.elements();
while (enumDirs.hasMoreElements()) {
Object ce = enumDirs.nextElement();
fileStr.append(File.pathSeparator + (String) ce);
}
GlobalValues.settings.setProperty("ScalaSciClassPath", fileStr.toString());
ClassLoader parentClassLoader = getClass().getClassLoader();
GlobalValues.extensionClassLoader =
new ExtensionClassLoader(GlobalValues.ScalaSciClassPath, parentClassLoader);
// update GUI components to account for the updated ScalaSci classpath
scalaExec.scalaLab.scalaLab.updateTree();
String[] command = new String[11];
String toolboxes = "";
for (int k = 0; k < GlobalValues.ScalaSciClassPathComponents.size(); k++)
toolboxes =
toolboxes
+ File.pathSeparator
+ GlobalValues.ScalaSciClassPathComponents.elementAt(k);
// compile the temporary file
command[0] = "java";
command[1] = "-classpath";
command[2] =
"."
+ File.pathSeparator
+ GlobalValues.jarFilePath
+ File.pathSeparator
+ toolboxes
+ File.pathSeparator
+ SelectedFilePathOnly;
command[3] = "com.sun.tools.javac.Main"; // the name of the Java compiler class
command[4] = "-classpath";
command[5] = command[2];
command[6] = "-sourcepath";
command[7] = command[2];
command[8] = "-d"; // where to place output class files
command[9] = SelectedFilePathOnly;
command[10] = SelectedFileWithPath;
String compileCommandString =
command[0]
+ " "
+ command[1]
+ " "
+ command[2]
+ " "
+ command[3]
+ " "
+ command[4]
+ " "
+ command[5]
+ " "
+ command[6]
+ " "
+ command[7]
+ " "
+ command[8]
+ " "
+ command[9]
+ " "
+ command[10];
System.out.println("compileCommand Java= " + compileCommandString);
try {
Runtime rt = Runtime.getRuntime();
Process javaProcess = rt.exec(command);
// an error message?
StreamGobbler errorGobbler = new StreamGobbler(javaProcess.getErrorStream(), "ERROR");
// any output?
StreamGobbler outputGobbler =
new StreamGobbler(javaProcess.getInputStream(), "OUTPUT");
// kick them off
errorGobbler.start();
outputGobbler.start();
// any error???
javaProcess.waitFor();
int rv = javaProcess.exitValue();
if (rv == 0) {
System.out.println("Process: exited successfully ");
JavaCompile javaCompileObj = null;
try {
javaCompileObj = new JavaCompile();
} catch (Exception ex) {
JOptionPane.showMessageDialog(
null,
"Unable to compile. Please check if your system's PATH variable includes the path to your javac compiler",
"Cannot compile - Check PATH",
JOptionPane.INFORMATION_MESSAGE);
ex.printStackTrace();
}
generateScriptCodeButton.setEnabled(true);
statusAreaBottom.setText(
"Step5: You can proceed now to create a draft ScalaSci-Script that utilizes your Java-based ODE integrator");
} else System.out.println("Process: exited with error, error value = " + rv);
} catch (IOException exio) {
System.out.println("IOException trying to executing " + command);
exio.printStackTrace();
} catch (InterruptedException ie) {
System.out.println("Interrupted Exception trying to executing " + command);
ie.printStackTrace();
}
}
});
// Step 5: Generate Script Code
generateScriptCodeButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
new scriptCodeGenerationFrame("ODE Script code", editingClassName, systemOrder);
}
});
buttonPanel.add(copyTemplateButton); // Step 1
buttonPanel.setEnabled(true);
buttonPanel.add(generateEditingButton); // Step 2
generateEditingButton.setEnabled(false);
buttonPanel.add(saveJavaClassButton); // Step 3
saveJavaClassButton.setEnabled(false);
buttonPanel.add(compileJavaClassButton); // Step 4
buttonPanel.add(compileJavaInternalCompilerButton);
compileJavaClassButton.setEnabled(false);
compileJavaInternalCompilerButton.setEnabled(false);
buttonPanel.add(generateScriptCodeButton); // Step 5
generateScriptCodeButton.setEnabled(false);
ODEWizardFrame.add(buttonPanel, BorderLayout.NORTH);
ODEWizardFrame.add(editPanel, BorderLayout.CENTER);
JPanel bottomPanel = new JPanel(new GridLayout(2, 1));
bottomPanel.add(paramPanel);
bottomPanel.add(statusPanel);
ODEWizardFrame.add(bottomPanel, BorderLayout.SOUTH);
ODEWizardFrame.setLocation(100, 100);
ODEWizardFrame.setSize(1400, 800);
ODEWizardFrame.setVisible(true);
}
// CONSTRUCTOR
public FACFrame() {
// SET PROPERTIES OF THE MAIN FRAME
setTitle("Fully Associative Cache");
setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
setIconImage(Toolkit.getDefaultToolkit().createImage(FACFrame.class.getResource("cam.gif")));
// CREATE COMPONENTS AND SET THEIR PROPERTIES
// NAVIGATION BUTTONS
restart = new JButton("Restart");
next = new JButton("Next");
back = new JButton("Back");
quit = new JButton("Quit");
// CACHE HITS AND MISSES INFO.
lCacheHits = new JLabel("Cache Hits");
lCacheMisses = new JLabel("Cache Misses");
tCacheHits = new JTextField(5);
tCacheMisses = new JTextField(5);
tCacheHits.setEditable(false);
tCacheHits.setFont(new Font("Monospaced", Font.BOLD, 14));
tCacheHits.setText(" 0");
tCacheMisses.setEditable(false);
tCacheMisses.setFont(new Font("Monospaced", Font.BOLD, 14));
tCacheMisses.setText(" 0");
// PROGRESS UPDATE AREA
tProgress = new JTextArea(3, 45);
tProgress.setEditable(false);
tProgress.setLineWrap(true);
tProgress.setWrapStyleWord(true);
tProgress.setCaretPosition(0);
tProgress.setFont(new Font("Serif", Font.BOLD + Font.ITALIC, 16));
tProgress.setText(
"Welcome to Fully Associative Cache!\nThe system specs are as follows -"
+ "\n 16 Blocks in Cache\n 32 Blocks in Main Memory\n 8 Words per Block"
+ "\n The replacement algorithm shown is the Least-Recently-Used algorithm"
+ "\n as it is the most commonly used one."
+ "\nPlease generate the Address Reference String."
+ "\nThen click on \"Next\" to continue.");
progressScroll = new JScrollPane();
progressScroll.getViewport().add(tProgress);
progressScroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
lProgress = new JLabel("PROGRESS UPDATE");
// ADDRESS REFERENCE STRING
addRefStrList = new JList();
addRefStrList.setEnabled(false);
addRefStrScroll = new JScrollPane();
addRefStrScroll.getViewport().setView(addRefStrList);
addRefStrScroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
addRefStrScroll.setPreferredSize(new Dimension(140, 300));
// BUTTONS USED TO ADDRESS GENERATION
autoGen = new JButton("Auto Generate Add. Ref. Str.");
selfGen = new JButton("Self Generate Add. Ref. Str.");
// BITS IN MAIN MEMORY ADDRESS
lBits = new JLabel(" TAG WORD");
tTag = new JTextField(9);
tTag.setEditable(false);
tWord = new JTextField(7);
tWord.setEditable(false);
// SET THE FONT STYLES FOR THE BITS IN MAIN MEMORY ADDRESS
tTag.setFont(new Font("Monospaced", Font.BOLD, 14));
tWord.setFont(new Font("Monospaced", Font.BOLD, 14));
// REGISTER LISTENERS
restart.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
reStart();
}
});
next.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
nextClicked = true;
step();
}
});
back.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
nextClicked = false;
step();
}
});
quit.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
int confirmQuit =
JOptionPane.showConfirmDialog(
null,
"Really Quit?",
"Quit Confirmation",
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE);
switch (confirmQuit) {
case JOptionPane.YES_OPTION:
removeInstance();
case JOptionPane.NO_OPTION:
break;
}
}
});
autoGen.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
autoGenerateString();
}
});
selfGen.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
selfGenerateString();
}
});
// DISABLE NAVIGATION BUTTONS FOR NOW
next.setEnabled(false);
back.setEnabled(false);
// CREATE PANELS
cachePanel = new FACachePanel();
memoryPanel = new MemoryPanel();
bottomPanel = new JPanel();
cache = new JPanel();
cacheHitsMisses = new JPanel();
pAutoSelfGen = new JPanel();
pAddRefStr = new JPanel();
pEastPanel = new JPanel();
pBitsInMM = new JPanel();
// ADD COMPONENTS TO THE PANELS
// PANEL WITH PROGRESS UPDATE TEXT AREA AND NAVIGATION BUTTONS
bottomPanel.add(lProgress);
bottomPanel.add(progressScroll);
bottomPanel.add(restart);
bottomPanel.add(next);
bottomPanel.add(back);
bottomPanel.add(quit);
// PANEL WITH CACHE BLOCKS, HITS AND MISSES INFO.
cacheHitsMisses.add(lCacheHits);
cacheHitsMisses.add(tCacheHits);
cacheHitsMisses.add(lCacheMisses);
cacheHitsMisses.add(tCacheMisses);
cacheHMBorder = BorderFactory.createEtchedBorder();
cacheHitsMisses.setBorder(BorderFactory.createTitledBorder(cacheHMBorder, ""));
cache.setLayout(new BorderLayout());
cache.add(cachePanel, "Center");
cache.add(cacheHitsMisses, "South");
// PANEL WITH ADDRESS REFERENCE STRING AND STRING GENERATION BUTTONS
pAutoSelfGen.setLayout(new GridLayout(2, 1));
pAutoSelfGen.add(autoGen);
pAutoSelfGen.add(selfGen);
pAddRefStr.setLayout(new BorderLayout());
pAddRefStr.setPreferredSize(new Dimension(160, 400));
pAddRefStr.add(addRefStrScroll, "Center");
pAddRefStr.add(pAutoSelfGen, "South");
addRefStrBorder = BorderFactory.createEtchedBorder();
pAddRefStr.setBorder(
BorderFactory.createTitledBorder(addRefStrBorder, " Address Reference String "));
// PANEL WITH THE MAIN MEMORY ADDRESS BITS INFO.
pBitsInMM.setLayout(new BorderLayout());
bitsInMMBorder = BorderFactory.createEtchedBorder();
pBitsInMM.setBorder(BorderFactory.createTitledBorder(bitsInMMBorder, " Main Memory Address "));
pBitsInMM.add(tTag, "Center");
pBitsInMM.add(tWord, "East");
pBitsInMM.add(lBits, "South");
// PANEL CONTAINING THE ADDRESS REF. STRING PANEL AND BITS IN MM PANEL
pEastPanel.setLayout(new BorderLayout());
pEastPanel.setPreferredSize(new Dimension(310, 650));
pEastPanel.add(pAddRefStr, "Center");
pEastPanel.add(pBitsInMM, "South");
// ADD COMPONENTS TO THE FRAME CONTAINER
Container c = getContentPane();
c.setLayout(new BorderLayout());
c.add(cache, "West");
c.add(memoryPanel, "Center");
c.add(pEastPanel, "East");
c.add(bottomPanel, "South");
// INITIALIZE ARRAYS THAT HOLDS STATUS OF EMPTY AND LRU CACHE BLOCKS
for (int i = 0; i < 16; i++) {
statusCacheEmpty[i] = true;
statusCacheLRU[i] = 0;
}
/*
* CALL THE FUNCTION TO GENERATE THE ARRAY addresses, WHICH CONTAINS ALL THE POSSIBLE MEMORY ADDRESSES
* THIS ARRAY WILL BE USEFUL IN THE AUTO GENERATION OF ADDRESSES AS WELL AS FOR VALIDATION OF
* ADDRESS STRINGS INPUT BY THE USER IF HE/SHE CHOOSES SELF GENERATION.
*/
createAddresses();
pack();
} // END CONSTRUCTOR
/**
* Inizialize frame components
*
* @throws CMSException
* @throws FileNotFoundException
* @throws IOException
* @throws GeneralSecurityException
*/
private void initComponents()
throws CMSException, FileNotFoundException, IOException, GeneralSecurityException {
// *********************************
panel4 = new JPanel();
label2 = new JLabel();
textPane1 = new JTextPane();
panel5 = new JPanel();
textArea1 = new JTextArea();
textArea2 = new JTextArea();
progressBar = new JProgressBar();
textPane2 = new JTextPane();
textField1 = new JTextField();
button1 = new JButton();
panel6 = new JPanel();
button2 = new JButton();
button3 = new JButton();
button4 = new JButton();
GridBagConstraints gbc;
// ======== this ========
Container contentPane = getContentPane();
contentPane.setLayout(new GridBagLayout());
((GridBagLayout) contentPane.getLayout()).columnWidths = new int[] {165, 0, 0};
((GridBagLayout) contentPane.getLayout()).rowHeights = new int[] {105, 50, 0};
((GridBagLayout) contentPane.getLayout()).columnWeights = new double[] {0.0, 1.0, 1.0E-4};
((GridBagLayout) contentPane.getLayout()).rowWeights = new double[] {1.0, 0.0, 1.0E-4};
// ======== panel4 ========
{
panel4.setBackground(Color.white);
panel4.setLayout(new GridBagLayout());
((GridBagLayout) panel4.getLayout()).columnWidths = new int[] {160, 0};
((GridBagLayout) panel4.getLayout()).rowHeights = new int[] {0, 0, 0};
((GridBagLayout) panel4.getLayout()).columnWeights = new double[] {0.0, 1.0E-4};
((GridBagLayout) panel4.getLayout()).rowWeights = new double[] {1.0, 1.0, 1.0E-4};
// ---- label2 ----
label2.setIcon(
new ImageIcon(
"images" + System.getProperty("file.separator") + "logo-freesigner-piccolo.png"));
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets.bottom = 5;
panel4.add(label2, gbc);
// ---- textPane1 ----
textPane1.setFont(new Font("Verdana", Font.BOLD, 12));
textPane1.setText("Lettura\ncertificati\nda token");
textPane1.setEditable(false);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.anchor = GridBagConstraints.NORTHWEST;
panel4.add(textPane1, gbc);
}
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets.bottom = 5;
gbc.insets.right = 5;
contentPane.add(panel4, gbc);
// ======== panel5 ========
{
panel5.setBackground(Color.white);
panel5.setLayout(new GridBagLayout());
((GridBagLayout) panel5.getLayout()).columnWidths = new int[] {0, 205, 0, 0};
((GridBagLayout) panel5.getLayout()).rowHeights = new int[] {100, 0, 30, 30, 0};
((GridBagLayout) panel5.getLayout()).columnWeights = new double[] {1.0, 0.0, 1.0, 1.0E-4};
((GridBagLayout) panel5.getLayout()).rowWeights = new double[] {0.0, 0.0, 1.0, 1.0, 1.0E-4};
// ---- textArea1 ----
textArea1.setFont(new Font("Verdana", Font.BOLD, 14));
textArea1.setText("Lettura certificati da token");
textArea1.setEditable(false);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.gridwidth = 3;
gbc.fill = GridBagConstraints.VERTICAL;
gbc.insets.bottom = 5;
panel5.add(textArea1, gbc);
// ---- textArea2 ----
textArea2.setFont(new Font("Verdana", Font.PLAIN, 12));
textArea2.setText("Ricerca certificati...\n");
textArea2.setEditable(false);
textArea2.setColumns(30);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 1;
gbc.gridwidth = 3;
gbc.fill = GridBagConstraints.BOTH;
panel5.add(textArea2, gbc);
progressBar.setValue(0);
progressBar.setMaximum(1);
progressBar.setStringPainted(true);
progressBar.setBounds(0, 0, 300, 150);
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 2;
gbc.fill = GridBagConstraints.HORIZONTAL;
gbc.insets.bottom = 5;
gbc.insets.right = 5;
gbc.gridwidth = 3;
panel5.add(progressBar, gbc);
}
gbc = new GridBagConstraints();
gbc.gridx = 1;
gbc.gridy = 0;
gbc.fill = GridBagConstraints.BOTH;
gbc.insets.bottom = 5;
contentPane.add(panel5, gbc);
// ======== panel6 ========
{
panel6.setBackground(Color.white);
panel6.setLayout(new GridBagLayout());
((GridBagLayout) panel6.getLayout()).columnWidths = new int[] {0, 0, 0, 0};
((GridBagLayout) panel6.getLayout()).rowHeights = new int[] {0, 0};
((GridBagLayout) panel6.getLayout()).columnWeights = new double[] {1.0, 1.0, 1.0, 1.0E-4};
((GridBagLayout) panel6.getLayout()).rowWeights = new double[] {1.0, 1.0E-4};
// ---- button2 ----
button2.setText("Indietro");
gbc = new GridBagConstraints();
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets.right = 5;
button2.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
frame.hide();
FreeSignerSignApplet nuovo = new FreeSignerSignApplet();
}
});
// panel6.add(button2, gbc);
// ---- button4 ----
button4.setText("Annulla");
gbc = new GridBagConstraints();
gbc.gridx = 2;
gbc.gridy = 0;
// panel6.add(button4, gbc);
}
gbc = new GridBagConstraints();
gbc.gridx = 1;
gbc.gridy = 1;
gbc.fill = GridBagConstraints.BOTH;
contentPane.add(panel6, gbc);
contentPane.setBackground(Color.white);
frame = new JFrame();
frame.setContentPane(contentPane);
frame.setTitle("Freesigner");
frame.setSize(300, 150);
frame.setResizable(false);
frame.pack();
Dimension d = Toolkit.getDefaultToolkit().getScreenSize();
frame.setLocation((d.width - frame.getWidth()) / 2, (d.height - frame.getHeight()) / 2);
frame.addWindowListener(
new WindowAdapter() {
public void windowClosing(WindowEvent e) {
System.exit(0);
}
});
timer =
new Timer(
10,
new ActionListener() {
public void actionPerformed(ActionEvent evt) {
frame.show();
if (task.getMessage() != null) {
String s = new String();
s = task.getMessage();
s = s.substring(0, Math.min(60, s.length()));
textArea2.setText(s + " ");
progressBar.setValue(task.getStatus());
}
if (task.isDone()) {
timer.stop();
// Finalizzo la cryptoki, onde evitare
// successivi errori PKCS11 "cryptoki alreadi initialized"
if ((task != null)) task.libFinalize();
ArrayList slotInfos = task.getSlotInfos();
if ((slotInfos == null) || slotInfos.isEmpty()) {
frame.show();
JOptionPane.showMessageDialog(
frame,
"Controllare la presenza sul sistema\n"
+ "della libreria PKCS11 impostata.",
"Nessun lettore rilevato",
JOptionPane.WARNING_MESSAGE);
frame.hide();
} else {
String st = task.getCRLerror();
if (st.length() > 0) {
timer.stop();
JOptionPane.showMessageDialog(
frame,
"C'è stato un errore nella verifica CRL.\n" + st,
"Errore verifica CRL",
JOptionPane.ERROR_MESSAGE);
frame.hide();
FreeSignerSignApplet nuovo = new FreeSignerSignApplet();
}
if (task.getDifferentCerts() == 0) {
if (task.getCIr() != null) {
JOptionPane.showMessageDialog(
frame,
"La carta "
+ task.getCardDescription()
+ " nel lettore "
+ conf.getReader()
+ " non contiene certificati",
"Attenzione",
JOptionPane.WARNING_MESSAGE);
} else
JOptionPane.showMessageDialog(
frame, task.getMessage(), "Errore:", JOptionPane.ERROR_MESSAGE);
}
frame.hide();
// confFrame.createTreeAndTokenNodes(task.getSlotInfos());
}
}
}
});
}
// initializes the internal component of the translator
protected void jbInit() {
this.getContentPane().setLayout(new GridBagLayout());
loadButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
loadButton_actionPerformed(e);
}
});
loadButton.setMaximumSize(new Dimension(39, 39));
loadButton.setMinimumSize(new Dimension(39, 39));
loadButton.setPreferredSize(new Dimension(39, 39));
loadButton.setSize(new Dimension(39, 39));
loadButton.setToolTipText("Load Source File");
loadButton.setIcon(loadIcon);
saveButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
saveButton_actionPerformed(e);
}
});
saveButton.setMaximumSize(new Dimension(39, 39));
saveButton.setMinimumSize(new Dimension(39, 39));
saveButton.setPreferredSize(new Dimension(39, 39));
saveButton.setSize(new Dimension(39, 39));
saveButton.setToolTipText("Save Destination File");
saveButton.setIcon(saveIcon);
singleStepButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
singleStepButton_actionPerformed(e);
}
});
singleStepButton.setMaximumSize(new Dimension(39, 39));
singleStepButton.setMinimumSize(new Dimension(39, 39));
singleStepButton.setPreferredSize(new Dimension(39, 39));
singleStepButton.setSize(new Dimension(39, 39));
singleStepButton.setToolTipText("Single Step");
singleStepButton.setIcon(singleStepIcon);
ffwdButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
ffwdButton_actionPerformed(e);
}
});
ffwdButton.setMaximumSize(new Dimension(39, 39));
ffwdButton.setMinimumSize(new Dimension(39, 39));
ffwdButton.setPreferredSize(new Dimension(39, 39));
ffwdButton.setSize(new Dimension(39, 39));
ffwdButton.setToolTipText("Fast Forward");
ffwdButton.setIcon(ffwdIcon);
rewindButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
rewindButton_actionPerformed(e);
}
});
rewindButton.setMaximumSize(new Dimension(39, 39));
rewindButton.setMinimumSize(new Dimension(39, 39));
rewindButton.setPreferredSize(new Dimension(39, 39));
rewindButton.setSize(new Dimension(39, 39));
rewindButton.setToolTipText("Rewind");
rewindButton.setIcon(rewindIcon);
stopButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
stopButton_actionPerformed(e);
}
});
stopButton.setMaximumSize(new Dimension(39, 39));
stopButton.setMinimumSize(new Dimension(39, 39));
stopButton.setPreferredSize(new Dimension(39, 39));
stopButton.setSize(new Dimension(39, 39));
stopButton.setToolTipText("Stop");
stopButton.setIcon(stopIcon);
fullTranslationButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
fullTranslationButton_actionPerformed(e);
}
});
fullTranslationButton.setMaximumSize(new Dimension(39, 39));
fullTranslationButton.setMinimumSize(new Dimension(39, 39));
fullTranslationButton.setPreferredSize(new Dimension(39, 39));
fullTranslationButton.setSize(new Dimension(39, 39));
fullTranslationButton.setToolTipText("Fast Translation");
fullTranslationButton.setIcon(fullTranslationIcon);
messageLbl.setFont(Utilities.statusLineFont);
messageLbl.setLineWrap(true);
messageLbl.setEditable(false);
messageLbl.setCursor(null);
messageLbl.setOpaque(false);
messageLbl.setFocusable(false);
messageLblPane.setBorder(BorderFactory.createLoweredBevelBorder());
// messageLblPane.setBounds(new Rectangle(0, 672, TRANSLATOR_WIDTH - 8, 20));
GridBagConstraints c = new GridBagConstraints();
c.fill = GridBagConstraints.HORIZONTAL;
c.ipadx = 0;
c.ipady = 0;
c.weightx = 1;
c.weighty = 0;
c.gridwidth = 3;
c.anchor = GridBagConstraints.CENTER;
c.gridx = 0;
c.gridy = 2;
this.getContentPane().add(messageLblPane, c);
// arrowLabel.setBounds(new Rectangle(290, 324, 88, 71));
arrowLabel.setIcon(arrowIcon);
// source.setVisibleRows(31);
// destination.setVisibleRows(31);
// source.setBounds(new Rectangle(35,100,source.getWidth(),source.getHeight()));
// destination.setBounds(new Rectangle(375,100,destination.getWidth(),destination.getHeight()));
c.fill = GridBagConstraints.BOTH;
c.ipadx = 0;
c.ipady = 0;
c.weightx = 1;
c.weighty = 1;
c.gridwidth = 1;
c.anchor = GridBagConstraints.CENTER;
c.gridx = 0;
c.gridy = 1;
this.getContentPane().add(source, c);
c.fill = GridBagConstraints.NONE;
c.ipadx = 0;
c.ipady = 0;
c.weightx = 0;
c.weighty = 0;
c.gridwidth = 1;
c.anchor = GridBagConstraints.CENTER;
c.gridx = 1;
c.gridy = 1;
this.getContentPane().add(arrowLabel, c);
c.fill = GridBagConstraints.BOTH;
c.ipadx = 0;
c.ipady = 0;
c.weightx = 1;
c.weighty = 1;
c.gridwidth = 1;
c.anchor = GridBagConstraints.CENTER;
c.gridx = 2;
c.gridy = 1;
this.getContentPane().add(destination, c);
// Adding the tool bar to this container.
toolBar.setFloatable(false);
toolBar.setLocation(0, 0);
toolBar.setLayout(new FlowLayout(FlowLayout.LEFT, 3, 0));
toolBar.setBorder(BorderFactory.createEtchedBorder());
arrangeToolBar();
c.fill = GridBagConstraints.HORIZONTAL;
c.ipadx = 0;
c.ipady = 0;
c.weightx = 1;
c.weighty = 0;
c.gridwidth = 3;
c.anchor = GridBagConstraints.CENTER;
c.gridx = 0;
c.gridy = 0;
this.getContentPane().add(toolBar, c);
toolBar.revalidate();
toolBar.repaint();
repaint();
// Creating the menu bar
arrangeMenu();
setJMenuBar(menuBar);
// initializing the window size and visibility
setDefaultCloseOperation(3);
setSize(new Dimension(TRANSLATOR_WIDTH, TRANSLATOR_HEIGHT));
setVisible(true);
}
/** Constructor for the class, sets up two fresh tabbed text areas for program feedback. */
public MessagesPane() {
super();
this.setMinimumSize(new Dimension(0, 0));
assemble = new JTextArea();
run = new JTextArea();
assemble.setEditable(false);
run.setEditable(false);
// Set both text areas to mono font. For assemble
// pane, will make messages more readable. For run
// pane, will allow properly aligned "text graphics"
// DPS 15 Dec 2008
Font monoFont = new Font(Font.MONOSPACED, Font.PLAIN, 12);
assemble.setFont(monoFont);
run.setFont(monoFont);
JButton assembleTabClearButton = new JButton("Clear");
assembleTabClearButton.setToolTipText("Clear the Mars Messages area");
assembleTabClearButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
assemble.setText("");
}
});
assembleTab = new JPanel(new BorderLayout());
assembleTab.add(createBoxForButton(assembleTabClearButton), BorderLayout.WEST);
assembleTab.add(
new JScrollPane(
assemble,
ScrollPaneConstants.VERTICAL_SCROLLBAR_AS_NEEDED,
ScrollPaneConstants.HORIZONTAL_SCROLLBAR_AS_NEEDED),
BorderLayout.CENTER);
assemble.addMouseListener(
new MouseAdapter() {
public void mouseClicked(MouseEvent e) {
String text;
int lineStart = 0;
int lineEnd = 0;
try {
int line = assemble.getLineOfOffset(assemble.viewToModel(e.getPoint()));
lineStart = assemble.getLineStartOffset(line);
lineEnd = assemble.getLineEndOffset(line);
text = assemble.getText(lineStart, lineEnd - lineStart);
} catch (BadLocationException ble) {
text = "";
}
if (text.length() > 0) {
// If error or warning, parse out the line and column number.
if (text.startsWith(ErrorList.ERROR_MESSAGE_PREFIX)
|| text.startsWith(ErrorList.WARNING_MESSAGE_PREFIX)) {
assemble.select(lineStart, lineEnd);
assemble.setSelectionColor(Color.YELLOW);
assemble.repaint();
int separatorPosition = text.indexOf(ErrorList.MESSAGE_SEPARATOR);
if (separatorPosition >= 0) {
text = text.substring(0, separatorPosition);
}
String[] stringTokens = text.split("\\s"); // tokenize with whitespace delimiter
String lineToken = ErrorList.LINE_PREFIX.trim();
String columnToken = ErrorList.POSITION_PREFIX.trim();
String lineString = "";
String columnString = "";
for (int i = 0; i < stringTokens.length; i++) {
if (stringTokens[i].equals(lineToken) && i < stringTokens.length - 1)
lineString = stringTokens[i + 1];
if (stringTokens[i].equals(columnToken) && i < stringTokens.length - 1)
columnString = stringTokens[i + 1];
}
int line = 0;
int column = 0;
try {
line = Integer.parseInt(lineString);
} catch (NumberFormatException nfe) {
line = 0;
}
try {
column = Integer.parseInt(columnString);
} catch (NumberFormatException nfe) {
column = 0;
}
// everything between FILENAME_PREFIX and LINE_PREFIX is filename.
int fileNameStart =
text.indexOf(ErrorList.FILENAME_PREFIX) + ErrorList.FILENAME_PREFIX.length();
int fileNameEnd = text.indexOf(ErrorList.LINE_PREFIX);
String fileName = "";
if (fileNameStart < fileNameEnd
&& fileNameStart >= ErrorList.FILENAME_PREFIX.length()) {
fileName = text.substring(fileNameStart, fileNameEnd).trim();
}
if (fileName != null && fileName.length() > 0) {
selectEditorTextLine(fileName, line, column);
selectErrorMessage(fileName, line, column);
}
}
}
}
});
JButton runTabClearButton = new JButton("Clear");
runTabClearButton.setToolTipText("Clear the Run I/O area");
runTabClearButton.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
run.setText("");
}
});
runTab = new JPanel(new BorderLayout());
runTab.add(createBoxForButton(runTabClearButton), BorderLayout.WEST);
runTab.add(
new JScrollPane(
run,
ScrollPaneConstants.VERTICAL_SCROLLBAR_AS_NEEDED,
ScrollPaneConstants.HORIZONTAL_SCROLLBAR_AS_NEEDED),
BorderLayout.CENTER);
this.addTab("Mars Messages", assembleTab);
this.addTab("Run I/O", runTab);
this.setToolTipTextAt(
0,
"Messages produced by Run menu. Click on assemble error message to select erroneous line");
this.setToolTipTextAt(1, "Simulated MIPS console input and output");
}
/** Create a font chooser dialog for the specified frame. */
public FontChooser(Frame owner) {
super(owner, "Choose a Font"); // Set dialog frame and title
// This dialog must be used as a modal dialog. In order to be used
// as a modeless dialog, it would have to fire a PropertyChangeEvent
// whenever the selected font changed, so that applications could be
// notified of the user's selections.
setModal(true);
// Figure out what fonts are available on the system
GraphicsEnvironment env = GraphicsEnvironment.getLocalGraphicsEnvironment();
fontFamilies = env.getAvailableFontFamilyNames();
// Set initial values for the properties
family = fontFamilies[0];
style = Font.PLAIN;
size = 18;
selectedFont = new Font(family, style, size);
// Create ItemChooser objects that allow the user to select font
// family, style, and size.
families = new ItemChooser("Family", fontFamilies, null, 0, ItemChooser.COMBOBOX);
styles = new ItemChooser("Style", styleNames, styleValues, 0, ItemChooser.COMBOBOX);
sizes = new ItemChooser("Size", sizeNames, null, 4, ItemChooser.COMBOBOX);
// Now register event listeners to handle selections
families.addItemChooserListener(
new ItemChooser.Listener() {
public void itemChosen(ItemChooser.Event e) {
setFontFamily((String) e.getSelectedValue());
}
});
styles.addItemChooserListener(
new ItemChooser.Listener() {
public void itemChosen(ItemChooser.Event e) {
setFontStyle(((Integer) e.getSelectedValue()).intValue());
}
});
sizes.addItemChooserListener(
new ItemChooser.Listener() {
public void itemChosen(ItemChooser.Event e) {
setFontSize(Integer.parseInt((String) e.getSelectedValue()));
}
});
// Create a component to preview the font.
preview = new JTextArea(defaultPreviewString, 5, 40);
preview.setFont(selectedFont);
// Create buttons to dismiss the dialog, and set handlers on them
okay = new JButton("Okay");
cancel = new JButton("Cancel");
okay.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
hide();
}
});
cancel.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
selectedFont = null;
hide();
}
});
// Put the ItemChoosers in a Box
Box choosersBox = Box.createHorizontalBox();
choosersBox.add(Box.createHorizontalStrut(15));
choosersBox.add(families);
choosersBox.add(Box.createHorizontalStrut(15));
choosersBox.add(styles);
choosersBox.add(Box.createHorizontalStrut(15));
choosersBox.add(sizes);
choosersBox.add(Box.createHorizontalStrut(15));
choosersBox.add(Box.createGlue());
// Put the dismiss buttons in another box
Box buttonBox = Box.createHorizontalBox();
buttonBox.add(Box.createGlue());
buttonBox.add(okay);
buttonBox.add(Box.createGlue());
buttonBox.add(cancel);
buttonBox.add(Box.createGlue());
// Put the choosers at the top, the buttons at the bottom, and
// the preview in the middle.
Container contentPane = getContentPane();
contentPane.add(new JScrollPane(preview), BorderLayout.CENTER);
contentPane.add(choosersBox, BorderLayout.NORTH);
contentPane.add(buttonBox, BorderLayout.SOUTH);
// Set the dialog size based on the component size.
pack();
}
// This method is called when the family, style, or size changes
protected void changeFont() {
selectedFont = new Font(family, style, size);
preview.setFont(selectedFont);
}
/**
* Initialisiere die obere Leiste, in welcher Messergebnisse und Einschätzungen geladen,<br>
* eine Formel eingegeben (berechnet oder durch ausprobieren der Platzhalter ausgewertet),<br>
* die Bewertungsergebnisse angezeigt werden.
*/
private void initTopPane() {
setLayout(new BorderLayout());
JPanel topPane = new JPanel(new GridLayout(12, 2));
initResultSelectionPanel(topPane);
initEstimationsSelectionPanel(topPane);
topPane.add(new JLabel("Variables:"));
variablesArea = new JTextArea(1, 30);
variablesArea.setEditable(false);
variablesArea.setLineWrap(true);
Font fnt = new Font("Monospaced", Font.PLAIN, 11);
variablesArea.setFont(fnt);
topPane.add(new JScrollPane(variablesArea));
topPane.add(new JLabel("Mode: "));
modeCombo = new JComboBox(new String[] {"Test effort estimation", "Bug count estimation"});
modeCombo.addItemListener(
new ItemListener() {
@Override
public void itemStateChanged(ItemEvent itemEvent) {
mode =
modeCombo.getSelectedIndex() == 0
? PredictionType.TestEffort
: PredictionType.BugCount;
benchmarkTableModel.setMode(mode);
benchmarkTable.updateUI();
}
});
topPane.add(modeCombo);
topPane.add(new JLabel("Option:"));
zeroIsInvalidCheckbox = new JCheckBox("Zero is invalid", false);
topPane.add(zeroIsInvalidCheckbox);
topPane.add(new JLabel("Prediction equation:"));
JPanel equationPanel = new JPanel(new FlowLayout(FlowLayout.LEFT));
equationField = new JTextField("0");
equationField.setColumns(35);
equationField.getDocument().addDocumentListener(new EquationChangeListener());
equationPanel.add(equationField);
JButton computeBtn = new JButton("Compute");
computeBtn.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
eqtnChanged();
}
});
equationPanel.add(computeBtn);
JButton enumerateBtn = new JButton("Enumerate");
enumerateBtn.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
String winner = null;
try {
winner =
Benchmark.enumerate(
equationField.getText(),
metricsData,
respProjs,
mode,
zeroIsInvalidCheckbox.isSelected());
} catch (Exception e1) {
e1.printStackTrace();
}
if (winner == null) {
return;
}
equationField.setText(winner);
eqtnChanged();
}
});
equationPanel.add(enumerateBtn);
topPane.add(equationPanel);
topPane.add(new JLabel("# Correct order predictions:"));
numCorrLbl = new JLabel("0");
topPane.add(numCorrLbl);
topPane.add(new JLabel("Total number of valid order estimations:"));
numEstimationsLbl = new JLabel("0");
topPane.add(numEstimationsLbl);
topPane.add(new JLabel("Percentage of correct orderings:"));
percCorrLbl = new JLabel("0%");
topPane.add(percCorrLbl);
topPane.add(new JLabel("# Correct order predictions weighted:"));
weightedNumCorrLbl = new JLabel("0");
topPane.add(weightedNumCorrLbl);
topPane.add(new JLabel("Total weight sum of valid estimators:"));
weightSumLbl = new JLabel("0");
topPane.add(weightSumLbl);
topPane.add(new JLabel("Percentage of weighted correct orderings:"));
percWeightCorrLbl = new JLabel("0%");
topPane.add(percWeightCorrLbl);
add(topPane, BorderLayout.NORTH);
}
public static JTextArea getTextArea(String s) {
JTextArea ret = new JTextArea(s);
ret.setFont(new Font("Courier", Font.PLAIN, 12));
ret.setTabSize(4);
return ret;
}
/** ** Constructor. Sets up user interface and initializations */
public Secondtry() {
operators = true;
doClear = false;
frame = new JFrame("Calculator");
frame.setLayout(new BorderLayout(10, 10));
display = new JTextArea();
display.setSize(245, 100);
display.setFont(new Font("SansSerif", Font.BOLD, 28));
display.setComponentOrientation(ComponentOrientation.RIGHT_TO_LEFT);
// create the numeric buttons for calculator
for (int i = 0; i < 10; i++) {
jb[i] = new JButton("" + (i));
jb[i].addActionListener(this);
jb[i].setFont(new Font("SansSerif", Font.BOLD, 14));
}
// create the square root button
root = new JButton("\u221A");
root.addActionListener(this);
root.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the clear button
clear = new JButton("C");
clear.addActionListener(this);
clear.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the plus button
plus = new JButton("\u002B");
plus.addActionListener(this);
plus.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the minus button
minus = new JButton("\u002D");
minus.addActionListener(this);
minus.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the multiply button
mult = new JButton("\u002A");
mult.addActionListener(this);
mult.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the division button
div = new JButton("\u002F");
div.addActionListener(this);
div.setFont(new Font("SansSerif", Font.BOLD, 14));
// create the equals button
equals = new JButton("\u003D");
equals.addActionListener(this);
equals.setFont(new Font("SansSerif", Font.BOLD, 14));
equals.setPreferredSize(new Dimension(50, 60));
// create the point button
point = new JButton("\u002E");
point.addActionListener(this);
point.setFont(new Font("SansSerif", Font.BOLD, 14));
// button grid
JPanel buttons = new JPanel(new GridLayout(5, 4, 4, 4));
// add buttons to grid
buttons.add(clear);
buttons.add(root);
buttons.add(div);
buttons.add(mult);
// add numeric buttons to grid
for (int i = 7; i < 10; i++) buttons.add(jb[i]);
buttons.add(minus);
// add numeric buttons to grid
for (int i = 4; i < 7; i++) buttons.add(jb[i]);
buttons.add(plus);
// add numeric buttons to grid
for (int i = 1; i < 4; i++) buttons.add(jb[i]);
buttons.add(equals);
buttons.add(jb[0]);
buttons.add(point);
frame.add(display, BorderLayout.CENTER);
frame.add(buttons, BorderLayout.SOUTH);
frame.setSize(300, 400);
frame.setVisible(true);
frame.setResizable(false);
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
}
public PartitionModelPanel(final PartitionSubstitutionModel partitionModel) {
super(12, (OSType.isMac() ? 6 : 24));
this.model = partitionModel;
initCodonPartitionComponents();
PanelUtils.setupComponent(nucSubstCombo);
nucSubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setNucSubstitutionModel((NucModelType) nucSubstCombo.getSelectedItem());
}
});
nucSubstCombo.setToolTipText("<html>Select the type of nucleotide substitution model.</html>");
PanelUtils.setupComponent(aaSubstCombo);
aaSubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
AminoAcidModelType type = (AminoAcidModelType) aaSubstCombo.getSelectedItem();
model.setAaSubstitutionModel(type);
citationText.setText(type.getCitation().toString());
}
});
aaSubstCombo.setToolTipText("<html>Select the type of amino acid substitution model.</html>");
PanelUtils.setupComponent(binarySubstCombo);
binarySubstCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setBinarySubstitutionModel((BinaryModelType) binarySubstCombo.getSelectedItem());
useAmbiguitiesTreeLikelihoodCheck.setSelected(
binarySubstCombo.getSelectedItem() == BinaryModelType.BIN_COVARION);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(
binarySubstCombo.getSelectedItem() != BinaryModelType.BIN_COVARION);
}
});
binarySubstCombo.setToolTipText("<html>Select the type of binary substitution model.</html>");
PanelUtils.setupComponent(useAmbiguitiesTreeLikelihoodCheck);
useAmbiguitiesTreeLikelihoodCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setUseAmbiguitiesTreeLikelihood(useAmbiguitiesTreeLikelihoodCheck.isSelected());
}
});
useAmbiguitiesTreeLikelihoodCheck.setToolTipText(
"<html>Detemine useAmbiguities in < treeLikelihood > .</html>");
PanelUtils.setupComponent(frequencyCombo);
frequencyCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setFrequencyPolicy((FrequencyPolicyType) frequencyCombo.getSelectedItem());
}
});
frequencyCombo.setToolTipText(
"<html>Select the policy for determining the base frequencies.</html>");
PanelUtils.setupComponent(heteroCombo);
heteroCombo.setToolTipText(
"<html>Select the type of site-specific rate<br>heterogeneity model.</html>");
heteroCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
boolean gammaHetero =
heteroCombo.getSelectedIndex() == 1 || heteroCombo.getSelectedIndex() == 3;
model.setGammaHetero(gammaHetero);
model.setInvarHetero(
heteroCombo.getSelectedIndex() == 2 || heteroCombo.getSelectedIndex() == 3);
if (gammaHetero) {
gammaCatLabel.setEnabled(true);
gammaCatCombo.setEnabled(true);
} else {
gammaCatLabel.setEnabled(false);
gammaCatCombo.setEnabled(false);
}
if (codingCombo.getSelectedIndex() != 0) {
heteroUnlinkCheck.setEnabled(heteroCombo.getSelectedIndex() != 0);
heteroUnlinkCheck.setSelected(heteroCombo.getSelectedIndex() != 0);
}
}
});
PanelUtils.setupComponent(gammaCatCombo);
gammaCatCombo.setToolTipText(
"<html>Select the number of categories to use for<br>the discrete gamma rate heterogeneity model.</html>");
gammaCatCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setGammaCategories(gammaCatCombo.getSelectedIndex() + 4);
}
});
setYang96Button = new JButton("Use Yang96 model");
setYang96Button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ev) {
setYang96Model();
}
});
PanelUtils.setupComponent(setYang96Button);
setYang96Button.setToolTipText(
"<html>Sets a 3 codon-position model with independent GTR and Gamma as described in<br>"
+ "Yang (1996) <i>J Mol Evol</i> <b>42</b>: 587–596. This model is named 3' in this paper.</html>");
setSRD06Button = new JButton("Use SRD06 model");
setSRD06Button.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent ev) {
setSRD06Model();
}
});
PanelUtils.setupComponent(setSRD06Button);
setSRD06Button.setToolTipText(
"<html>Sets the SRD06 model as described in<br>"
+ "Shapiro, Rambaut & Drummond (2006) <i>MBE</i> <b>23</b>: 7-9.</html>");
citationText = new JTextArea(1, 40);
citationText.setLineWrap(true);
citationText.setWrapStyleWord(true);
citationText.setEditable(false);
citationText.setFont(this.getFont());
citationText.setOpaque(false);
AminoAcidModelType type = (AminoAcidModelType) aaSubstCombo.getSelectedItem();
citationText.setText(type.getCitation().toString());
dolloCheck.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent actionEvent) {
if (dolloCheck.isSelected()) {
binarySubstCombo.setSelectedIndex(0);
binarySubstCombo.setEnabled(false);
useAmbiguitiesTreeLikelihoodCheck.setSelected(true);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(false);
frequencyCombo.setEnabled(false);
frequencyCombo.setSelectedItem(FrequencyPolicyType.EMPIRICAL);
heteroCombo.setSelectedIndex(0);
heteroCombo.setEnabled(false);
model.setBinarySubstitutionModel(BinaryModelType.BIN_DOLLO);
model.setDolloModel(true);
DolloComponentOptions comp =
(DolloComponentOptions)
model.getOptions().getComponentOptions(DolloComponentOptions.class);
comp.createParameters(model.getOptions());
comp.setActive(true);
} else {
binarySubstCombo.setEnabled(true);
useAmbiguitiesTreeLikelihoodCheck.setEnabled(true);
frequencyCombo.setEnabled(true);
heteroCombo.setEnabled(true);
model.setBinarySubstitutionModel(
(BinaryModelType) binarySubstCombo.getSelectedItem());
model.setDolloModel(false);
}
}
});
PanelUtils.setupComponent(dolloCheck);
// dolloCheck.addChangeListener(new ChangeListener() {
// public void stateChanged(ChangeEvent e) {
// model.setDolloModel(true);
// }
// });
dolloCheck.setEnabled(true);
dolloCheck.setToolTipText(
"<html>Activates a Stochastic Dollo model as described in<br>"
+ "Alekseyenko, Lee & Suchard (2008) <i>Syst Biol</i> <b>57</b>: 772-784.</html>");
PanelUtils.setupComponent(discreteTraitSiteModelCombo);
discreteTraitSiteModelCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setDiscreteSubstType(
(DiscreteSubstModelType) discreteTraitSiteModelCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(continuousTraitSiteModelCombo);
continuousTraitSiteModelCombo.setToolTipText(
"<html>Select the model of continuous random walk, either homogenous<br>"
+ "or relaxed random walk (RRW) with a choice of distributions.</html>");
continuousTraitSiteModelCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setContinuousSubstModelType(
(ContinuousSubstModelType) continuousTraitSiteModelCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(latLongCheck);
latLongCheck.setToolTipText(
"<html>Specify whether this is a geographical trait representing <br>"
+ "latitude and longitude. Provides appropriate statistics to log file.</html>");
latLongCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setIsLatitudeLongitude(latLongCheck.isSelected());
}
});
latLongCheck.setEnabled(false);
PanelUtils.setupComponent(useLambdaCheck);
useLambdaCheck.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
ContinuousComponentOptions component =
(ContinuousComponentOptions)
model.getOptions().getComponentOptions(ContinuousComponentOptions.class);
component.setUseLambda(model, useLambdaCheck.isSelected());
}
});
useLambdaCheck.setToolTipText(
"<html>Estimate degree of phylogenetic correlation in continuous traits using <br>"
+ "a tree transform. Inspired by Pagel (1999), described in Lemey et al (2013) <i>in prep</i></html>");
PanelUtils.setupComponent(activateBSSVS);
activateBSSVS.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setActivateBSSVS(activateBSSVS.isSelected());
}
});
activateBSSVS.setToolTipText(
"<html>Activates Bayesian stochastic search variable selection on the rates as described in<br>"
+ "Lemey, Rambaut, Drummond & Suchard (2009) <i>PLoS Computational Biology</i> <b>5</b>: e1000520</html>");
// ============ micro-sat ================
microsatName.setColumns(30);
microsatName.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setName(microsatName.getText());
}
});
microsatMax.setColumns(10);
microsatMax.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setMax(Integer.parseInt(microsatMax.getText()));
}
});
microsatMin.setColumns(10);
microsatMin.addKeyListener(
new java.awt.event.KeyListener() {
public void keyTyped(KeyEvent e) {}
public void keyPressed(KeyEvent e) {}
public void keyReleased(KeyEvent e) {
model.getMicrosatellite().setMin(Integer.parseInt(microsatMin.getText()));
}
});
PanelUtils.setupComponent(shareMicroSatCheck);
shareMicroSatCheck.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
model.getOptions().shareMicroSat = shareMicroSatCheck.isSelected();
if (shareMicroSatCheck.isSelected()) {
model.getOptions().shareMicroSat();
} else {
model.getOptions().unshareMicroSat();
}
setOptions();
}
});
PanelUtils.setupComponent(rateProportionCombo);
rateProportionCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setRatePorportion(
(MicroSatModelType.RateProportionality) rateProportionCombo.getSelectedItem());
}
});
// rateProportionCombo.setToolTipText("<html>Select the type of microsatellite substitution
// model.</html>");
PanelUtils.setupComponent(mutationBiasCombo);
mutationBiasCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setMutationBias(
(MicroSatModelType.MutationalBias) mutationBiasCombo.getSelectedItem());
}
});
PanelUtils.setupComponent(phaseCombo);
phaseCombo.addItemListener(
new ItemListener() {
public void itemStateChanged(ItemEvent ev) {
model.setPhase((MicroSatModelType.Phase) phaseCombo.getSelectedItem());
}
});
setupPanel();
setOpaque(false);
}
void jbInit() throws Exception {
titledBorder1 =
new TitledBorder(
BorderFactory.createLineBorder(new Color(153, 153, 153), 2), "Assembler messages");
this.getContentPane().setLayout(borderLayout1);
this.setIconifiable(true);
this.setMaximizable(true);
this.setResizable(true);
this.setTitle("EDIT");
splitPane.setOrientation(JSplitPane.VERTICAL_SPLIT);
splitPane.setDividerLocation(470);
sourceArea.setFont(new java.awt.Font("Monospaced", 0, 12));
controlPanel.setLayout(gridBagLayout1);
controlPanel.setBorder(BorderFactory.createLoweredBevelBorder());
positionPanel.setLayout(gridBagLayout2);
fileLabel.setText("Source file:");
fileText.setEditable(false);
browseButton.setSelected(false);
browseButton.setText("Browse ...");
assembleButton.setEnabled(false);
assembleButton.setText("Assemble file");
saveButton.setEnabled(false);
saveButton.setText("Save file");
lineLabel.setText("Line:");
lineText.setMinimumSize(new Dimension(50, 20));
lineText.setPreferredSize(new Dimension(50, 20));
lineText.setEditable(false);
columnLabel.setText("Column:");
columnText.setMinimumSize(new Dimension(41, 20));
columnText.setPreferredSize(new Dimension(41, 20));
columnText.setEditable(false);
columnText.setText("");
messageScrollPane.setBorder(titledBorder1);
messageScrollPane.setMinimumSize(new Dimension(33, 61));
messageScrollPane.setPreferredSize(new Dimension(60, 90));
optionsButton.setEnabled(false);
optionsButton.setText("Assembler options ...");
messageScrollPane.getViewport().add(messageList, null);
messageList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
this.getContentPane().add(splitPane, BorderLayout.CENTER);
splitPane.add(textScrollPane, JSplitPane.TOP);
splitPane.add(controlPanel, JSplitPane.BOTTOM);
textScrollPane.getViewport().add(sourceArea, null);
controlPanel.add(
fileLabel,
new GridBagConstraints(
0,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.WEST,
GridBagConstraints.NONE,
new Insets(5, 5, 0, 0),
0,
0));
controlPanel.add(
fileText,
new GridBagConstraints(
1,
0,
3,
1,
1.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(5, 5, 0, 0),
0,
0));
controlPanel.add(
browseButton,
new GridBagConstraints(
4,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(5, 5, 0, 5),
0,
0));
controlPanel.add(
optionsButton,
new GridBagConstraints(
2,
1,
1,
1,
1.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(5, 5, 0, 0),
0,
0));
controlPanel.add(
assembleButton,
new GridBagConstraints(
3,
1,
1,
1,
0.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(5, 5, 0, 0),
0,
0));
controlPanel.add(
saveButton,
new GridBagConstraints(
4,
1,
1,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.HORIZONTAL,
new Insets(5, 5, 0, 5),
0,
0));
controlPanel.add(
positionPanel,
new GridBagConstraints(
0,
1,
2,
1,
0.0,
0.0,
GridBagConstraints.CENTER,
GridBagConstraints.NONE,
new Insets(5, 5, 0, 0),
0,
0));
positionPanel.add(
lineLabel,
new GridBagConstraints(
0,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(0, 0, 0, 0),
0,
0));
positionPanel.add(
lineText,
new GridBagConstraints(
1,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(0, 5, 0, 0),
0,
0));
positionPanel.add(
columnLabel,
new GridBagConstraints(
2,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(0, 10, 0, 0),
0,
0));
positionPanel.add(
columnText,
new GridBagConstraints(
3,
0,
1,
1,
0.0,
0.0,
GridBagConstraints.EAST,
GridBagConstraints.NONE,
new Insets(0, 5, 0, 0),
0,
0));
controlPanel.add(
messageScrollPane,
new GridBagConstraints(
0,
2,
5,
1,
1.0,
1.0,
GridBagConstraints.CENTER,
GridBagConstraints.BOTH,
new Insets(5, 5, 5, 5),
0,
0));
}
public void go() {
// build gui
frame = new JFrame("Quiz Card Buider");
JPanel mainPanel = new JPanel();
Font bigFont = new Font("sanserif", Font.BOLD, 24);
question = new JTextArea(6, 20);
question.setLineWrap(true);
question.setWrapStyleWord(true);
question.setFont(bigFont);
JScrollPane qScroller = new JScrollPane(question);
qScroller.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
qScroller.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER);
answer = new JTextArea(6, 20);
answer.setLineWrap(true);
answer.setWrapStyleWord(true);
answer.setFont(bigFont);
JScrollPane aScroller = new JScrollPane(question);
aScroller.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
aScroller.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER);
JButton nextButton = new JButton("Next Card");
cardList = new ArrayList<QuizCard>();
JLabel qLabel = new JLabel("Question");
JLabel aLabel = new JLabel("Answer");
mainPanel.add(qLabel);
mainPanel.add(qScroller);
mainPanel.add(aLabel);
mainPanel.add(aScroller);
mainPanel.add(nextButton);
nextButton.addActionListener(new NextCardListener());
JMenuBar menuBar = new JMenuBar();
JMenu fileMenu = new JMenu("File");
JMenuItem newMenuItem = new JMenuItem("New");
JMenuItem saveMenuItem = new JMenuItem("Save");
newMenuItem.addActionListener(new NewMenuListener());
saveMenuItem.addActionListener(new SaveMenuListener());
fileMenu.add(newMenuItem);
fileMenu.add(saveMenuItem);
menuBar.add(fileMenu);
frame.setJMenuBar(menuBar);
frame.getContentPane().add(BorderLayout.CENTER, mainPanel);
frame.setSize(500, 600);
frame.setVisible(true);
// frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
}
public void go() {
frame = new JFrame("Quiz Card Player");
JPanel mainPanel = new JPanel();
Font bigFont = new Font("sanserif", Font.BOLD, 24);
display = new JTextArea(10, 20);
display.setFont(bigFont);
display.setLineWrap(true);
display.setEditable(false);
JScrollPane qScroller = new JScrollPane(display);
qScroller.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER);
qScroller.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
nextButton = new JButton("Show Questions");
nextButton.addActionListener(new NextCardListener());
mainPanel.add(qScroller);
mainPanel.add(nextButton);
JMenuBar menuBar = new JMenuBar();
JMenu fileMenu = new JMenu("File");
JMenuItem loadMenuItem = new JMenuItem("Load Card Set");
loadMenuItem.addActionListener(new OpenMenuListener());
fileMenu.add(loadMenuItem);
menuBar.add(fileMenu);
frame.setJMenuBar(menuBar);
frame.getContentPane().add(BorderLayout.CENTER, mainPanel);
frame.setSize(640, 500);
frame.setVisible(true);
}
