public void toggleShowMeasurements() {
if (showMeasurements.isSelected()) {
measurements.setStructures(currentNucId, currentStructureIdx);
measurements.setObjects(list.getSelectedValues());
this.container.add(measurements);
} else this.container.remove(measurements);
core.refreshDisplay();
}
public void invertSelection() {
int[] sel = this.list.getSelectedIndices();
int[] newSel = new int[listModel.getSize() - sel.length];
int idx = 0;
int lastIdx = -1;
for (int i : sel) {
for (int i2 = lastIdx + 1; i2 < i; i2++) newSel[idx++] = i2;
lastIdx = i;
}
for (int i2 = lastIdx + 1; i2 < listModel.getSize(); i2++) newSel[idx++] = i2;
list.setSelectedIndices(newSel);
}
protected HashMap<Integer, ArrayList<Object3DGui>> getSplitSelection() {
System.out.println(
"get split selection: currenChannels==null?" + (this.currentChannels == null));
if (this.currentChannels == null) return new HashMap<Integer, ArrayList<Object3DGui>>(0);
HashMap<Integer, ArrayList<Object3DGui>> res =
new HashMap<Integer, ArrayList<Object3DGui>>(this.currentChannels.length);
for (ObjectStructure ass : currentChannels) res.put(ass.getIdx(), new ArrayList<Object3DGui>());
for (Object o : list.getSelectedValues()) {
Object3DGui o3D = (Object3DGui) (o);
int idx = o3D.getChannel().getIdx();
res.get(idx).add(o3D);
}
return res;
}
public void setStructures(ObjectId id, Object[] selectedChannels) {
// System.out.println("Set Structures: cell"+id+ " sel channels
// length"+selectedChannels.length);
this.currentNucId = id;
this.currentChannels = new ObjectStructure[selectedChannels.length];
currentStructureIdx = new int[selectedChannels.length];
for (int i = 0; i < selectedChannels.length; i++) {
currentChannels[i] = (ObjectStructure) selectedChannels[i];
currentStructureIdx[i] = currentChannels[i].getIdx();
}
setSortKeys();
populateObjects();
if (showMeasurements.isSelected()) {
measurements.setStructures(id, currentStructureIdx);
measurements.setObjects(list.getSelectedValues());
}
}
@Override
public void valueChanged(ListSelectionEvent lse) {
if (lse.getValueIsAdjusting()) {
return;
}
if (populatingObjects || selectingObject || !showObjects.isSelected()) {
return;
}
selectingObject = true;
if (measurements != null && showMeasurements.isSelected())
measurements.setObjects(list.getSelectedValues());
try {
showRois3D();
} catch (Exception e) {
exceptionPrinter.print(e, "", Core.GUIMode);
}
selectingObject = false;
}
public void populateObjects() {
try {
this.listModel.removeAllElements();
if (currentChannels == null) {
return;
}
this.populatingObjects = true;
ArrayList<Integer> selection = null;
if (showSelection != null && showSelection.isSelected()) selection = new ArrayList<Integer>();
int currentIdx = 0;
for (ObjectStructure ass : currentChannels) {
Object3D[] os = ass.getObjects();
if (os != null) {
Object3DGui[] osg = new Object3DGui[os.length];
for (int i = 0; i < os.length; i++) osg[i] = new Object3DGui(os[i], ass);
if (layout instanceof ObjectManagerLayout
&& currentChannels.length == 1
&& !((ObjectManagerLayout) layout).getSortKey().equals("idx"))
this.sort(((ObjectManagerLayout) layout).getSortKey(), osg, ass.getIdx());
// System.out.println("populating objects.. nb objects:"+os.length);
for (Object3DGui o3D : osg) {
this.listModel.addElement(o3D);
if (selection != null && o3D.isInSelection()) selection.add(currentIdx);
currentIdx++;
}
// if (selection!=null) System.out.println("populating objects.. selection
// size:"+selection.size());
} // else System.out.println("no objects int channel:"+ass.getChannelName());
}
if (selection != null && !selection.isEmpty()) {
int[] sel = new int[selection.size()];
int i = 0;
for (int idx : selection) sel[i++] = idx;
list.setSelectedIndices(sel);
}
} catch (Exception e) {
exceptionPrinter.print(e, "", Core.GUIMode);
}
this.populatingObjects = false;
}
protected void initPanels() {
BasicDBObject usr = Core.mongoConnector.getUser();
splitDist = new DoubleParameter("Dist", "splitMinDistObj", 5d, DoubleParameter.nfDEC1);
splitDist.dbGet(usr);
splitRad = new DoubleParameter("Rad", "splitRadObj", 2d, DoubleParameter.nfDEC1);
splitRad.dbGet(usr);
ObjectManagerLayout lay = new ObjectManagerLayout(this);
showObjects = lay.showROIs;
showObjects.setSelected(true);
splitDist.addToContainer(lay.splitDistPanel);
showMeasurements = lay.viewMeasurements;
measurements = new MeasurementDisplayer();
this.listModel = new DefaultListModel();
this.list = lay.list;
this.list.setModel(listModel);
this.list.setCellRenderer(new LCRenderer());
this.list.setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
this.list.setLayoutOrientation(JList.VERTICAL);
listSelectionModel = list.getSelectionModel();
listSelectionModel.addListSelectionListener(this);
this.layout = lay;
}
public void selectAll() {
list.setSelectionInterval(0, list.getModel().getSize() - 1);
}