Example #1
0
 void loadTransformation(String filename, ResultsTable res) {
   try {
     String line;
     FileReader fr = new FileReader(filename);
     BufferedReader br = new BufferedReader(fr);
     if (!br.readLine().equals(" 	Z-Step	Raw Width minus Heigh	Calibration Width minus Height")) {
       IJ.error("File does not seam to be an Astigmatism calibration file");
       return;
     }
     // java.lang.String [] elements = new java.lang.String [3];
     java.lang.String[] elements;
     int counter = 1;
     res.reset();
     while ((line = br.readLine()) != null) {
       IJ.showStatus("Loading element " + counter + "... sit back and relax.");
       counter++;
       line.trim();
       elements = line.split("\t");
       res.incrementCounter();
       res.addValue("Z-Step", Double.parseDouble(elements[1]));
       res.addValue("Raw Width minus Heigh", Double.parseDouble(elements[2]));
       res.addValue("Calibration Width minus Height", Double.parseDouble(elements[3]));
     }
     fr.close();
   } catch (FileNotFoundException e) {
     IJ.error("File not found exception" + e);
     return;
   } catch (IOException e) {
     IJ.error("IOException exception" + e);
     return;
   } catch (NumberFormatException e) {
     IJ.error("Number format exception" + e);
     return;
   }
 }
Example #2
0
  public void run() {
    line.trim();
    elements = line.split("\t");
    if (elements.length < 14) return;

    lock.lock();
    res.incrementCounter();
    res.addValue("Intensity", Double.parseDouble(elements[1]));
    res.addValue("X (px)", Double.parseDouble(elements[2]));
    res.addValue("Y (px)", Double.parseDouble(elements[3]));
    res.addValue("X (nm)", Double.parseDouble(elements[4]));
    res.addValue("Y (nm)", Double.parseDouble(elements[5]));
    res.addValue("Z (nm)", Double.parseDouble(elements[6]));
    res.addValue("Left-StdDev (px)", Double.parseDouble(elements[7]));
    res.addValue("Right-StdDev (px)", Double.parseDouble(elements[8]));
    res.addValue("Up-StdDev (px)", Double.parseDouble(elements[9]));
    res.addValue("Down-StdDev (px)", Double.parseDouble(elements[10]));
    res.addValue("X Symmetry (%)", Double.parseDouble(elements[11]));
    res.addValue("Y Symmetry (%)", Double.parseDouble(elements[12]));
    res.addValue("Width minus Height (px)", Double.parseDouble(elements[13]));
    res.addValue("Frame Number", Double.parseDouble(elements[14]));
    lock.unlock();
  }