Java SAMRecordQueryNameComparator Examples

Example #1

File: Biostar145820.java Project: ssivilich/jvarkit

 @Override
 public int compare(RandSamRecord o1, RandSamRecord o2) {
   long i = (long) o1.rand_index - (long) o2.rand_index;
   if (i != 0L) return (i < 0 ? -1 : 1);
   return secondCompare.compare(o1.samRecord, o2.samRecord);
 }

Example #2

File: IlluminaBasecallsToFastq.java Project: picsaver/picard

 @Override
 public int compare(final FastqRecordsForCluster r1, final FastqRecordsForCluster r2) {
   return SAMRecordQueryNameComparator.compareReadNames(
       r1.templateRecords[0].getReadHeader(), r2.templateRecords[0].getReadHeader());
 }