Example #1
0
  public static Collection<AimImagingObservationCharacteristic> parseImgObsCharacteristics(
      Document document, GeneralSeries generalSeries) {

    Collection<AimImagingObservationCharacteristic> results =
        new ArrayList<AimImagingObservationCharacteristic>();

    // ns1:ImagingObservationCharacteristic
    NodeList imagingObservationCharacteristics =
        document.getElementsByTagNameNS(AIM_NS, "ImagingObservationCharacteristic");

    for (int i = 0; i < imagingObservationCharacteristics.getLength(); i++) {
      Element imagingObservationCharacteristicElement =
          (Element) imagingObservationCharacteristics.item(i);

      String codeMeaning = imagingObservationCharacteristicElement.getAttribute("codeMeaning");
      String codeValue = imagingObservationCharacteristicElement.getAttribute("codeValue");
      String codingSchemeDesignator =
          imagingObservationCharacteristicElement.getAttribute("codingSchemeDesignator");

      AimImagingObservationCharacteristic imagingObservationCharacteristic =
          new AimImagingObservationCharacteristic();
      imagingObservationCharacteristic.setCodeMeaningName(codeMeaning);
      imagingObservationCharacteristic.setCodeSchemaDesignator(codingSchemeDesignator);
      imagingObservationCharacteristic.setCodeValue(codeValue);
      imagingObservationCharacteristic.setGeneralSeries(generalSeries);
      imagingObservationCharacteristic.setSeriesPKId(generalSeries.getId());

      Set<AimQuantification> quantifications =
          parseQuantifications(
              imagingObservationCharacteristicElement, imagingObservationCharacteristic);
      imagingObservationCharacteristic.setAimQuantificationCollection(quantifications);

      results.add(imagingObservationCharacteristic);
    }
    return results;
  }
 private List<CustomSeriesDTO> convertHibernateObjectToCustomSeriesDTO(List<GeneralSeries> daos) {
   List<CustomSeriesDTO> returnList = new ArrayList<CustomSeriesDTO>();
   if (daos != null) {
     for (int i = 0; i < daos.size(); i++) {
       CustomSeriesDTO sd = new CustomSeriesDTO();
       GeneralSeries gs = (GeneralSeries) (daos.get(i));
       sd.setAnnotationsFlag(gs.getAnnotationsFlag() == null ? false : gs.getAnnotationsFlag());
       sd.setAnnotationsSize(gs.getAnnotationTotalSize());
       sd.setDescription(gs.getSeriesDesc());
       sd.setModality(gs.getModality());
       sd.setNumberImages(gs.getImageCount());
       sd.setPatientId(gs.getPatientId());
       sd.setSeriesUID(gs.getSeriesInstanceUID());
       sd.setStudyUid(gs.getStudy().getStudyInstanceUID());
       sd.setStudyPkId(gs.getStudy().getId());
       sd.setProject(gs.getStudy().getPatient().getDataProvenance().getProject());
       sd.setSecurityGroup(gs.getSecurityGroup());
       returnList.add(sd);
     }
   }
   return returnList;
 }