@Test
public void testGetCriterionTypeFromQuery() {
Query query = new Query();
CompoundCriterion compoundCriterion1 = new CompoundCriterion();
CompoundCriterion compoundCriterion2 = new CompoundCriterion();
compoundCriterion1.getCriterionCollection().add(new GeneNameCriterion());
compoundCriterion1.getCriterionCollection().add(compoundCriterion2);
compoundCriterion2.getCriterionCollection().add(new SubjectListCriterion());
compoundCriterion2.getCriterionCollection().add(new SubjectListCriterion());
query.setCompoundCriterion(compoundCriterion1);
assertEquals(1, QueryUtil.getCriterionTypeFromQuery(query, GeneNameCriterion.class).size());
assertEquals(2, QueryUtil.getCriterionTypeFromQuery(query, SubjectListCriterion.class).size());
assertEquals(
0, QueryUtil.getCriterionTypeFromQuery(query, StringComparisonCriterion.class).size());
}
/**
* Unit test setup.
*
* @throws Exception on error
*/
@Before
public void setUp() throws Exception {
Platform platform = dao.getPlatform("platformName");
ReporterList reporterList =
platform.addReporterList("reporterList", ReporterTypeEnum.DNA_ANALYSIS_REPORTER);
study = new Study();
query = new Query();
query.setCopyNumberPlatform(platform);
StudySubscription subscription = new StudySubscription();
subscription.setStudy(study);
query.setSubscription(subscription);
StudySubjectAssignment assignment = new StudySubjectAssignment();
study.getAssignmentCollection().add(assignment);
SampleAcquisition acquisition = new SampleAcquisition();
Sample sample = new Sample();
Array array = new Array();
array.setPlatform(platform);
ArrayData arrayData = new ArrayData();
arrayData.setStudy(study);
arrayData.setArray(array);
arrayData.getReporterLists().add(reporterList);
reporterList.getArrayDatas().add(arrayData);
arrayData.setSample(sample);
sample.getSampleAcquisitions().add(acquisition);
sample.getArrayDataCollection().add(arrayData);
segmentData = new SegmentData();
arrayData.getSegmentDatas().add(segmentData);
segmentData.setArrayData(arrayData);
acquisition.setSample(sample);
assignment.getSampleAcquisitionCollection().add(acquisition);
StudyConfiguration studyConfiguration = new StudyConfiguration();
studyConfiguration.getGenomicDataSources().add(new GenomicDataSourceConfiguration());
study.setStudyConfiguration(studyConfiguration);
when(dao.findMatchingSegmentDatas(
any(CopyNumberAlterationCriterion.class), any(Study.class), any(Platform.class)))
.thenReturn(Arrays.asList(segmentData));
when(dao.findMatchingSegmentDatasByLocation(
anyListOf(SegmentData.class), any(Study.class), any(Platform.class)))
.thenReturn(Arrays.asList(segmentData));
}
