@Override
protected Object formBackingObject(HttpServletRequest request) throws Exception {
ReviewAeReportCommand command =
new ReviewAeReportCommand(expeditedAdverseEventReportDao, reportDao);
String aeReportId = request.getParameter("aeReport");
String reportId = request.getParameter("report");
ExpeditedAdverseEventReport aeReport =
expeditedAdverseEventReportDao.getById(Integer.parseInt(aeReportId));
Report report = reportDao.getById(Integer.parseInt(reportId));
if (report.isWorkflowEnabled()
&& report.getLastVersion().getReportStatus().equals(ReportStatus.COMPLETED)
&& report.getWorkflowId() != null) {
User user = workflowService.findCoordinatingCenterReviewer(report.getWorkflowId());
if (user != null) {
Reporter r = new Reporter();
r.copy(user);
aeReport.setReviewer(r);
}
} else {
aeReport.setReviewer(aeReport.getReporter());
}
String xml = adeersReportGenerator.generateCaaersXml(aeReport, report);
String pngOutFile = WebUtils.getBaseFileName(aeReportId, reportId);
// CAAERS-5904, see report as per the report definition format
List<String> list =
adeersReportGenerator.generateImage(xml, tempDir + File.separator + pngOutFile, report);
command.addFiles(aeReportId, reportId, list);
if (reportId != null && !reportId.equals("") && !reportId.equals("null"))
command.setReportId(Integer.parseInt(reportId));
else command.setReportId(null);
// (CAAERS-5865)to perform sync only for ctep-esys studies,
// set studyOutOfSync to false, so sync will not run for non-ctep-esys studies
if (aeReport.getStudy().getCtepEsysIdentifier() == null) {
command.setStudyOutOfSync(false);
}
command.setAeReport(aeReport);
for (Report r : aeReport.getReports()) {
if (r.getId().equals(Integer.parseInt(reportId)))
command.setWorkflowEnabled(r.getReportDefinition().getWorkflowEnabled());
}
return command;
}
@Override
public void postProcess(
HttpServletRequest request, SubmitExpeditedAdverseEventCommand command, Errors errors) {
log.debug("In postProcess");
int targetPage = WebUtils.getTargetPage(request);
if (log.isDebugEnabled())
log.debug("Should process SubmitReportTab:postProcess (back button) ? " + !(targetPage < 2));
if (targetPage < 2) return; // only process if we are moving forward.
if (log.isDebugEnabled())
log.debug("Should process SubmitReportTab:postProcess (errors) ? " + !errors.hasErrors());
if (errors.hasErrors()) return;
if (log.isDebugEnabled()) log.debug("Report active ? " + command.getReport().isActive());
if (log.isDebugEnabled())
log.debug("Report submitted already ? " + command.isSubmissionInprogress());
if (command.getReport().isActive() && (!command.isSubmissionInprogress())) {
reportSubmissionService.submitReport(command.getReport());
command.setSubmissionInprogress(true);
}
}
@Override
protected void createFieldGroups(
AeInputFieldCreator creator, ExpeditedAdverseEventInputCommand command) {
String baseProp = "responseDescription";
InputField desc =
createTextArea(
baseProp + ".eventDescription",
"Description & treatment of event(s)",
new TextSizeValidator(4000));
InputFieldAttributes.setColumns(desc, 70);
InputFieldAttributes.setRows(desc, 8);
Map<Object, Object> postEventStatusOpts = new LinkedHashMap<Object, Object>();
postEventStatusOpts.put("", "Please select");
postEventStatusOpts.putAll(
WebUtils.collectOptions(
Arrays.asList(PostAdverseEventStatus.values()), null, "displayName"));
Map<Object, Object> eventStatusOpts = new LinkedHashMap<Object, Object>();
eventStatusOpts.put("", "Please select");
eventStatusOpts.putAll(
WebUtils.collectOptions(Arrays.asList(EventStatus.values()), null, "displayName"));
InputField removedDateField =
createPastDateField(
baseProp + ".dateRemovedFromProtocol", "Date removed from protocol", false);
InputField treatmentTimeField =
createTimeField(
baseProp + ".primaryTreatmentApproximateTime", "Event treatment, approximate time");
treatmentTimeField
.getAttributes()
.put(
InputField.HELP,
"ae.treatment.aeReport.treatmentInformation.primaryTreatmentApproximateTime");
creator.createFieldGroup(
"desc",
desc,
treatmentTimeField,
createSelectField(
baseProp + ".presentStatus", "Present status", false, postEventStatusOpts),
createPastDateField(baseProp + ".recoveryDate", "Date of recovery or death", false),
createBooleanSelectField(
baseProp + ".retreated", "Has the participant been re-treated?", false),
removedDateField);
InputField reducedDose =
InputFieldFactory.createTextField(
baseProp + ".reducedDose", "If reduced, specify: New dose", false);
creator.createFieldGroup(
"DCP_INFO",
createSelectField(
baseProp + ".blindBroken",
"Was blind broken due to event?",
false,
createBooleanOptions()),
createSelectField(
baseProp + ".studyDrugInterrupted",
"Was study agent stopped/interrupted/reduced in response to event?",
false,
createBooleanOptions()),
reducedDose,
createPastDateField(baseProp + ".reducedDate", "Date dose reduced", false),
InputFieldFactory.createTextField(
baseProp + ".daysNotGiven",
"If interrupted, specify total number of days not given",
false),
InputFieldFactory.createCheckboxField(baseProp + ".autopsyPerformed", "Autopsy performed?"),
InputFieldFactory.createTextField(baseProp + ".causeOfDeath", "Cause of death"),
createSelectField(
baseProp + ".eventAbate",
"Did event abate after study drug was stopped or dose reduced?",
false,
eventStatusOpts),
createSelectField(
baseProp + ".eventReappear",
"Did event reappear after study drug was reintroduced?",
false,
eventStatusOpts));
}
@Override
public Map<String, InputFieldGroup> createFieldGroups(final T command) {
InputFieldGroup participantFieldGroup;
Map<Object, Object> options = null;
participantFieldGroup = new DefaultInputFieldGroup(PARTICIPANT_FIELD_GROUP);
FieldValidator fv = FieldValidator.ALPHANUMERIC_VALIDATOR;
if (!command.isUnidentifiedMode()) {
participantFieldGroup
.getFields()
.add(
InputFieldFactory.createTextField(
"participant.firstName", "First Name", FieldValidator.NOT_NULL_VALIDATOR, fv));
participantFieldGroup
.getFields()
.add(
InputFieldFactory.createTextField(
"participant.lastName", "Last Name", FieldValidator.NOT_NULL_VALIDATOR, fv));
participantFieldGroup
.getFields()
.add(InputFieldFactory.createTextField("participant.maidenName", "Maiden Name", fv));
participantFieldGroup
.getFields()
.add(InputFieldFactory.createTextField("participant.middleName", "Middle Name", fv));
}
InputField dobYear = InputFieldFactory.createTextField("yearString", "Year", true);
InputFieldAttributes.setSize(dobYear, 4);
InputField dobMonth = InputFieldFactory.createTextField("monthString", "Month", true);
InputFieldAttributes.setSize(dobMonth, 2);
InputField dobDay = InputFieldFactory.createTextField("dayString", "Day");
InputFieldAttributes.setSize(dobDay, 2);
CompositeField dobField;
if (command.isUnidentifiedMode())
dobField =
new CompositeField(
"participant.dateOfBirth",
new DefaultInputFieldGroup(null, "Date of birth")
.addField(dobYear)
.addField(dobMonth));
else
dobField =
new CompositeField(
"participant.dateOfBirth",
new DefaultInputFieldGroup(null, "Date of birth")
.addField(dobYear)
.addField(dobMonth)
.addField(dobDay));
dobField.setRequired(true);
dobField
.getAttributes()
.put(InputField.HELP, "par.par_create_participant.participant.dateOfBirth");
participantFieldGroup.getFields().add(dobField);
participantFieldGroup
.getFields()
.add(
InputFieldFactory.createSelectField(
"participant.gender",
"Gender",
true,
collectOptions(listValues.getParticipantGender())));
participantFieldGroup
.getFields()
.add(
InputFieldFactory.createSelectField(
"participant.ethnicity",
"Ethnicity",
true,
collectOptions(listValues.getParticipantEthnicity())));
participantFieldGroup
.getFields()
.add(
InputFieldFactory.createSelectField(
"participant.race", "Race", true, collectOptions(listValues.getParticipantRace())));
/*
repeatingFieldGroupFactory = new RepeatingFieldGroupFactory("main", "participant.identifiers");
repeatingFieldGroupFactory.addField(InputFieldFactory.createTextField("value", "Identifier", true));
*/
options = new LinkedHashMap<Object, Object>();
List<Lov> list = configurationProperty.getMap().get("participantIdentifiersType");
options.put("", "Please select");
options.putAll(WebUtils.collectOptions(list, "code", "desc"));
InputFieldGroupMap map = new InputFieldGroupMap();
if (!command.isUnidentifiedMode()) {
byte i = 0;
byte j = 0;
InputFieldGroup idtFieldGroupOrg;
InputFieldGroup idtFieldGroupSys;
for (Identifier idt : command.participant.getIdentifiers()) {
if (idt instanceof SystemAssignedIdentifier) {
String s = "participant.systemAssignedIdentifiers[" + i + "].";
idtFieldGroupSys = new DefaultInputFieldGroup("mainSys" + i);
idtFieldGroupSys
.getFields()
.add(
InputFieldFactory.createTextField(
s + "value",
"Identifier",
FieldValidator.NOT_NULL_VALIDATOR,
FieldValidator.IDENTIFIER_VALIDATOR));
idtFieldGroupSys
.getFields()
.add(
InputFieldFactory.createSelectField(
s + "type", "Identifier Type", true, options));
idtFieldGroupSys
.getFields()
.add(InputFieldFactory.createTextField(s + "systemName", "System Name", true));
map.addInputFieldGroup(idtFieldGroupSys);
i++;
} else {
String s = "participant.organizationIdentifiers[" + j + "].";
idtFieldGroupOrg = new DefaultInputFieldGroup("mainOrg" + j);
idtFieldGroupOrg
.getFields()
.add(
InputFieldFactory.createTextField(
s + "value",
"Identifier",
FieldValidator.NOT_NULL_VALIDATOR,
FieldValidator.IDENTIFIER_VALIDATOR));
idtFieldGroupOrg
.getFields()
.add(
InputFieldFactory.createSelectField(
s + "type", "Identifier Type", true, options));
idtFieldGroupOrg
.getFields()
.add(
InputFieldFactory.createAutocompleterField(
s + "organization", "Organization", true));
map.addInputFieldGroup(idtFieldGroupOrg);
j++;
}
}
}
map.addInputFieldGroup(participantFieldGroup);
return map;
}
protected Map<Object, Object> collectOptions(final List<ListValues> list) {
Map<Object, Object> options = new LinkedHashMap<Object, Object>();
options.putAll(WebUtils.collectOptions(list, "code", "desc"));
return options;
}