/**
* ************************** readDataFile **************************** * Reads the input file and
* gets the number of taxa and alignment * length * *
* *********************************************************************
*/
public static void getHeader(String infilenameComplete) {
// needs the complete path to the file
try {
TextInputStream in = new TextInputStream(infilenameComplete);
String line = in.readLine();
in.close();
StringTokenizer reader = new StringTokenizer(line);
options.setNumTaxa(Integer.parseInt(reader.nextToken()));
options.setNumSites(Integer.parseInt(reader.nextToken()));
} catch (FileNotFoundException e) {
JOptionPane.showMessageDialog(
new JFrame(),
"Could not read the input alignment",
"jModelTest error",
JOptionPane.ERROR_MESSAGE);
}
if (options.getNumTaxa() <= 4)
JOptionPane.showMessageDialog(
new JFrame(),
"The number of taxa does not seem to be correct: " + options.getNumTaxa(),
"jModelTest error",
JOptionPane.ERROR_MESSAGE);
if (options.getNumSites() <= 1)
JOptionPane.showMessageDialog(
new JFrame(),
"The number of sites does not seem to be correct: " + options.getNumTaxa(),
"jModelTest error",
JOptionPane.ERROR_MESSAGE);
}
