/**
* @param request object of HttpServletRequest
* @param eventParametersForm : eventParametersForm
* @throws Exception : Exception
*/
@Override
protected void setRequestParameters(
HttpServletRequest request, EventParametersForm eventParametersForm) throws Exception {
// String operation = (String) request.getAttribute(Constants.OPERATION);
String formName;
final ReceivedEventParametersForm receivedEventParametersForm =
(ReceivedEventParametersForm) eventParametersForm;
if (receivedEventParametersForm.getOperation().equals(Constants.EDIT)) {
formName = Constants.RECEIVED_EVENT_PARAMETERS_EDIT_ACTION;
} else {
formName = Constants.RECEIVED_EVENT_PARAMETERS_ADD_ACTION;
}
// set the ReceivedQuality List.
final List qualityList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_RECEIVED_QUALITY, null);
request.setAttribute("receivedQualityList", qualityList);
request.setAttribute("formName", formName);
}
/* (non-Javadoc)
* @see org.apache.struts.action.ActionForm#validate(org.apache.struts.action.ActionMapping, javax.servlet.http.HttpServletRequest)
*/
public ActionErrors validate(ActionMapping mapping, HttpServletRequest request) {
final ActionErrors errors = new ActionErrors();
final Validator validator = new Validator();
double aliquotQuantity = 0;
double initialQuantity = 0;
try {
if (validator.isEmpty(this.className)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.type")));
}
// if(this.labelGenType.equals("2") && validator.isEmpty(this.labelFormat))
// {
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "collectionProtocol.labelformat", ApplicationProperties
// .getValue("collectionProtocol.labelformat")));
// }
if (validator.isEmpty(this.type)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.subType")));
}
final List specimenClassList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_SPECIMEN_CLASS, null);
if (!Validator.isEnumeratedValue(specimenClassList, this.className)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.type")));
}
if (!Validator.isEnumeratedValue(AppUtility.getSpecimenTypes(this.className), this.type)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.subType")));
}
if (!validator.isEmpty(this.quantity)) {
try {
this.quantity = new BigDecimal(this.quantity).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(this.quantity, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.quantity")));
}
} else {
if (!validator.isNumeric(this.quantity, 0)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.info(exp.getMessage(), exp);
exp.printStackTrace();
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
} else {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
if (!this.quantityPerAliquot.equals("")) {
if (this.quantityPerAliquot != null && this.quantityPerAliquot.trim().length() != 0) {
try {
this.quantityPerAliquot = new BigDecimal(this.quantityPerAliquot).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(this.quantityPerAliquot.trim())) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
} else {
if (!validator.isPositiveNumeric(this.quantityPerAliquot.trim(), 1)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
exp.printStackTrace();
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("aliquots.qtyPerAliquot")));
}
}
}
if (!this.noOfAliquots.equals("")) {
this.noOfAliquots = AppUtility.isValidCount(this.noOfAliquots, errors);
if (!validator.isNumeric(this.noOfAliquots, 1)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("specimenArrayAliquots.noOfAliquots")));
} else {
try {
if (this.quantityPerAliquot.equals("")) {
if (this.quantity.equals("0") || this.quantity.equals("0")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.invalid", ApplicationProperties.getValue("specimen.quantity")));
} else {
aliquotQuantity =
Double.parseDouble(this.quantity) / Double.parseDouble(this.noOfAliquots);
initialQuantity =
Double.parseDouble(this.quantity)
- (aliquotQuantity * Double.parseDouble(this.noOfAliquots));
}
} else {
aliquotQuantity = Double.parseDouble(this.quantityPerAliquot);
initialQuantity = Double.parseDouble(this.quantity);
initialQuantity =
initialQuantity - (aliquotQuantity * Double.parseDouble(this.noOfAliquots));
}
if (initialQuantity < 0) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.invalid",
ApplicationProperties.getValue("cpbasedentry.quantityperaliquot")));
}
// if(this.labelGenTypeForAliquot.equals("2") &&
// validator.isEmpty(this.labelFormatForAliquot))
// {
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "sp.req.aliquot.labelformat", ApplicationProperties
// .getValue("sp.req.aliquot.labelformat")));
// }
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.quantity")));
}
}
}
if (this.tissueSite.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.tissueSite")));
}
if (this.tissueSide.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required", ApplicationProperties.getValue("specimen.tissueSide")));
}
if (this.noOfAliquots != null && !this.noOfAliquots.equals("")) {
if (!this.storageLocationForAliquotSpecimen.equals("Auto")
&& !this.storageLocationForAliquotSpecimen.equals("Manual")
&& !this.storageLocationForAliquotSpecimen.equals("Virtual")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("cpbasedentry.aliquotstoragelocation")));
}
}
if (!this.storageLocationForSpecimen.equals("Auto")
&& !this.storageLocationForSpecimen.equals("Manual")
&& !this.storageLocationForSpecimen.equals("Virtual")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("cpbasedentry.specimenstoragelocation")));
}
if (this.pathologicalStatus.equals("")) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("specimen.pathologicalStatus")));
}
final List tissueSiteList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_TISSUE_SITE, null);
if (!Validator.isEnumeratedValue(tissueSiteList, this.tissueSite)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.tissueSite")));
}
final List tissueSideList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_TISSUE_SIDE, null);
if (!Validator.isEnumeratedValue(tissueSideList, this.tissueSide)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid", ApplicationProperties.getValue("specimen.tissueSide")));
}
final List pathologicalStatusList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_PATHOLOGICAL_STATUS, null);
if (!Validator.isEnumeratedValue(pathologicalStatusList, this.pathologicalStatus)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.invalid",
ApplicationProperties.getValue("specimen.pathologicalStatus")));
}
if ((this.collectionEventUserId) == 0L) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError("errors.item.required", "Collection Event's user"));
}
// checks the collectionProcedure
if (!validator.isValidOption(this.getCollectionEventCollectionProcedure())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.collectionprocedure");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.item.required", message));
}
final List procedureList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_COLLECTION_PROCEDURE, null);
if (!Validator.isEnumeratedValue(
procedureList, this.getCollectionEventCollectionProcedure())) {
final String message = ApplicationProperties.getValue("cpbasedentry.collectionprocedure");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
// Container validation
if (!validator.isValidOption(this.getCollectionEventContainer())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.container");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.item.required", message));
}
final List containerList =
CDEManager.getCDEManager().getPermissibleValueList(Constants.CDE_NAME_CONTAINER, null);
if (!Validator.isEnumeratedValue(containerList, this.getCollectionEventContainer())) {
final String message =
ApplicationProperties.getValue("collectioneventparameters.container");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
if ((this.receivedEventUserId) == 0L) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError("errors.item.required", "Received Event's user"));
}
final List qualityList =
CDEManager.getCDEManager()
.getPermissibleValueList(Constants.CDE_NAME_RECEIVED_QUALITY, null);
if (!Validator.isEnumeratedValue(qualityList, this.receivedEventReceivedQuality)) {
final String message = ApplicationProperties.getValue("cpbasedentry.receivedquality");
errors.add(ActionErrors.GLOBAL_ERROR, new ActionError("errors.invalid", message));
}
if (this.className.equals(Constants.MOLECULAR)) {
if (!validator.isDouble(this.concentration, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format", ApplicationProperties.getValue("specimen.concentration")));
}
}
if (this.noOfDeriveSpecimen >= 1) {
boolean bSpecimenClass = false;
boolean bSpecimenType = false;
// boolean validateLabel = false;
// boolean labelGenType = false;
// boolean labelFormat = false;
final Map deriveSpecimenMap = this.deriveSpecimenMap();
final Iterator it = deriveSpecimenMap.keySet().iterator();
while (it.hasNext()) {
final String key = (String) it.next();
String mapValue = (String) deriveSpecimenMap.get(key);
if (!bSpecimenClass) {
if (key.indexOf("specimenClass") != -1 && !validator.isValidOption(mapValue)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.selected",
ApplicationProperties.getValue("collectionprotocol.specimenclass")));
bSpecimenClass = true;
}
}
// if(!labelGenType)
// {
// if ((key.indexOf("_labelGenType")) != -1 && mapValue != null)
// {
// if (mapValue.equals("2"))
// {
// validateLabel=true;
// labelGenType = true;
// }
// }
//
// }
// if(!labelFormat && labelGenType)
// {
// if(validateLabel && (key.indexOf("_labelFormat")) != -1 &&
// validator.isEmpty(mapValue))
// {
// labelFormat = true;
// errors.add(ActionErrors.GLOBAL_ERROR, new ActionError(
// "sp.req.derivative.labelformat", ApplicationProperties
// .getValue("sp.req.derivative.labelformat")));
// }
// }
if ((key.indexOf("_concentration")) != -1 && mapValue != null) {
mapValue = new BigDecimal(mapValue).toPlainString();
if (!validator.isDouble(mapValue, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("specimen.concentration")));
}
}
if (!bSpecimenType) {
if (key.indexOf("specimenType") != -1 && !validator.isValidOption(mapValue)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.selected",
ApplicationProperties.getValue("collectionprotocol.specimetype")));
bSpecimenType = true;
}
}
if ((key.indexOf("_quantity")) != -1) {
if (!validator.isEmpty(mapValue)) {
try {
mapValue = new BigDecimal(mapValue).toPlainString();
if (AppUtility.isQuantityDouble(this.className, this.type)) {
if (!validator.isDouble(mapValue, true)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.required",
ApplicationProperties.getValue("specimen.quantity")));
}
} else {
if (!validator.isNumeric(mapValue, 0)) {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue(
"cpbasedentry.derivedspecimen.quantity")));
}
}
} catch (final NumberFormatException exp) {
CreateSpecimenTemplateForm.logger.error(exp.getMessage(), exp);
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("cpbasedentry.derivedspecimen.quantity")));
}
} else {
errors.add(
ActionErrors.GLOBAL_ERROR,
new ActionError(
"errors.item.format",
ApplicationProperties.getValue("cpbasedentry.derivedspecimen.quantity")));
}
}
}
}
} catch (final Exception excp) {
CreateSpecimenTemplateForm.logger.error(excp.getMessage(), excp);
excp.printStackTrace();
}
return errors;
}
