/** Update the output location as appropriate. */
public void updateOutputLocation() {
if (outputPathChangeEnabled && outputPathUserSpecified) {
// The user can and did influence output path. Keep whatever was the previous setting, unless
// it is a special value like "<No Files Selected>" or "<No Title>" - wipe that one.
if (outputPathSpecial) {
outputPathSpecial = false;
}
validateOutputPath(output.getText());
} else {
// Automatically populate the file path
final List<ClientFileSearch> fileSearches = getFileSearches();
if (files == null || (fileSearches == null) || (fileSearches.isEmpty())) {
if (!outputPathChangeEnabled) {
output.setText("<No Files Selected>");
outputPathSpecial = true;
} else {
output.setText("");
}
outputValidationPanel.removeValidationsFor(output);
outputPath = null;
} else if ((getTitleText() == null) || getTitleText().equals("")) {
if (!outputPathChangeEnabled) {
output.setText("<No Title>");
outputPathSpecial = true;
} else {
output.setText("");
}
outputValidationPanel.removeValidationsFor(output);
outputPath = null;
} else {
outputPathSpecial = false;
outputPath = getOutputPathFromFileTable(fileSearches);
output.setText(outputPath);
validateOutputPath(outputPath);
}
}
}
/** Check query string to see if the user wants to load previous search data into the forms. */
private void loadPreviousSearch(final ClientLoadedSearch result) {
if (result == null) {
return;
}
final ClientSwiftSearchDefinition definition = result.getDefinition();
displayMessage("Loaded previous search " + definition.getSearchTitle());
if (result.getClientParamSetList() != null) {
// We transfered a new parameter set list together with search definition
// Update the parameter editor.
paramsEditor.setParamSetList(result.getClientParamSetList());
}
paramsEditor.setSelectedParamSet(result.getDefinition().getParamSet());
// Determine search type
SearchType searchType = null;
for (final ClientFileSearch clientFileSearch : definition.getInputFiles()) {
final String fileNamefileNameWithoutExtension =
FilePathWidget.getFileNameWithoutExtension(clientFileSearch.getPath());
final SearchType newSearchType =
SearchTypeList.getSearchTypeFromSetup(
definition.getSearchTitle(),
fileNamefileNameWithoutExtension,
clientFileSearch.getExperiment(),
clientFileSearch.getBiologicalSample());
if (searchType == null) {
searchType = newSearchType;
} else {
if (!searchType.equals(newSearchType)) {
searchType = SearchType.Custom;
break;
}
}
}
final String title = definition.getSearchTitle();
setTitleText(title);
if (spectrumQaSetupPanel != null) {
spectrumQaSetupPanel.setParameters(definition.getSpectrumQa());
}
if (reportSetupPanel != null) {
reportSetupPanel.setParameters(definition.getPeptideReport());
}
final List<ClientFileSearch> inputFiles = definition.getInputFiles();
files.setFiles(inputFiles, searchType);
selectUser(definition.getUser().getEmail());
final String filePath = getOutputPathFromFileTable(inputFiles);
// If the loaded path differs from what the file table would produce, it is user-specified
// .. set the proper flags
if (definition.getOutputFolder() == null || !definition.getOutputFolder().equals(filePath)) {
outputPathUserSpecified = true;
}
outputPath = definition.getOutputFolder();
output.setText(outputPath);
updateOutputLocation();
additionalSettingsPanel.setDefinition(definition);
showPageContentsAfterLoad();
}