Example #1
0
  private void storeGraph(Graph graph) {
    if (numPatternsToStore < 1) return;

    if (topGraphs.isEmpty() || score > topGraphs.first().getScore()) {
      Graph graphCopy = new EdgeListGraphSingleConnections(graph);

      topGraphs.add(new ScoredGraph(graphCopy, score));

      if (topGraphs.size() > getNumPatternsToStore()) {
        topGraphs.remove(topGraphs.first());
      }
    }
  }
Example #2
0
  private void bes(Graph graph) {
    TetradLogger.getInstance().log("info", "** BACKWARD EQUIVALENCE SEARCH");

    initializeArrowsBackward(graph);

    while (!sortedArrows.isEmpty()) {
      Arrow arrow = sortedArrows.first();
      sortedArrows.remove(arrow);

      Node x = arrow.getX();
      Node y = arrow.getY();

      clearArrow(x, y);

      if (!validDelete(arrow.getHOrT(), arrow.getNaYX(), graph)) {
        continue;
      }

      List<Node> h = arrow.getHOrT();
      double bump = arrow.getBump();

      delete(x, y, h, graph, bump);
      score += bump;
      rebuildPattern(graph);

      storeGraph(graph);

      initializeArrowsBackward(
          graph); // Rebuilds Arrows from scratch each time. Fast enough for backwards.
    }
  }
Example #3
0
  /**
   * Forward equivalence search.
   *
   * @param graph The graph in the state prior to the forward equivalence search.
   */
  private void fes(Graph graph, List<Node> nodes) {
    TetradLogger.getInstance().log("info", "** FORWARD EQUIVALENCE SEARCH");

    lookupArrows = new HashMap<OrderedPair, Set<Arrow>>();

    initializeArrowsForward(nodes);

    while (!sortedArrows.isEmpty()) {
      Arrow arrow = sortedArrows.first();
      sortedArrows.remove(arrow);

      Node x = arrow.getX();
      Node y = arrow.getY();

      clearArrow(x, y);

      if (graph.isAdjacentTo(x, y)) {
        continue;
      }

      if (!validInsert(x, y, arrow.getHOrT(), arrow.getNaYX(), graph)) {
        continue;
      }

      List<Node> t = arrow.getHOrT();
      double bump = arrow.getBump();

      Set<Edge> edges = graph.getEdges();

      insert(x, y, t, graph, bump);
      score += bump;
      rebuildPattern(graph);

      // Try to avoid duplicating scoring calls. First clear out all of the edges that need to be
      // changed,
      // then change them, checking to see if they're already been changed. I know, roundabout, but
      // there's
      // a performance boost.
      for (Edge edge : graph.getEdges()) {
        if (!edges.contains(edge)) {
          reevaluateForward(graph, nodes, edge.getNode1(), edge.getNode2());
        }
      }

      storeGraph(graph);
    }
  }