Example #1
0
  private void findUnitClusters(int[] clusterassoc, double[][] lkvalues, int[][] neighbors) {
    Vector<ObjectComparablePair> topunitterms = new Vector<ObjectComparablePair>();
    // sort units according to their highest value -> order to find clusters
    for (int i = 0; i < lkvalues.length; i++) {
      double max = Stat.max(lkvalues[i]);
      if (max <= 0.) continue;
      topunitterms.addElement(new ObjectComparablePair(new Integer(i), new Double(max)));
    }
    Collections.sort(topunitterms);
    Collections.reverse(topunitterms);

    Iterator<ObjectComparablePair> ocpit = topunitterms.iterator();
    while (ocpit.hasNext()) {
      int curunit = ((Integer) (ocpit.next().getObject())).intValue();
      floodFillSimilarClusters(curunit, clusterassoc, lkvalues, neighbors, curunit);
    }

    // join all empty units
    int firstemptyindex = -1;
    for (int i = 0; i < lkvalues.length; i++) {
      if (Stat.max(lkvalues[i]) <= 0.) {
        if (firstemptyindex == -1) firstemptyindex = i;
        else clusterassoc[i] = firstemptyindex;
      }
    }
  }
Example #2
0
  private void floodFillSimilarClusters(
      int unitpos, int[] clusterassoc, double[][] lkvalues, int[][] neighbors, int startunitpos) {
    // check if already associated to other cluster (end of recursion)
    if (clusterassoc[unitpos] != unitpos && clusterassoc[unitpos] != startunitpos) return;

    Vector<Integer> joinedunits = new Vector<Integer>();
    // check neighbors (starts with index 1) for join candidates
    for (int i = 1; i < neighbors[unitpos].length; i++) {
      if (neighbors[unitpos][i] != -1
          && // on the som
          clusterassoc[neighbors[unitpos][i]] != startunitpos
          && // not already in cluster
          clusterassoc[neighbors[unitpos][i]]
              == neighbors[unitpos][i]) { // not part of any other cluster

        // join two units iff summed up vector differs below threshold from both original vectors
        double[] cosNormA = Vec.cosineNormalize(Vec.cloneVector(lkvalues[unitpos]));
        double[] cosNormB = Vec.cosineNormalize(Vec.cloneVector(lkvalues[neighbors[unitpos][i]]));
        double[] sumAB = Vec.add(lkvalues[unitpos], lkvalues[neighbors[unitpos][i]]);
        double[] cosNormAB = Vec.cosineNormalize(Vec.cloneVector(sumAB));

        if (Vec.euclDist(cosNormA, cosNormAB) < 0.6 && Vec.euclDist(cosNormB, cosNormAB) < 0.6) {
          // similar units -> join
          clusterassoc[neighbors[unitpos][i]] = startunitpos;

          // write new vector to all associated
          for (int k = 0; k < clusterassoc.length; k++) {
            if (clusterassoc[k] == startunitpos) {
              lkvalues[k] = sumAB;
            }
          }
          //					Vec.copyTo(lkvalues[unitpos], sumAB);
          //					Vec.copyTo(lkvalues[neighbors[unitpos][i]], sumAB);

          // add to list for recursion
          joinedunits.addElement(new Integer(neighbors[unitpos][i]));
        }
      }
    }
    // recursion over joined units
    Iterator<Integer> iit = joinedunits.iterator();
    while (iit.hasNext()) {
      floodFillSimilarClusters(
          iit.next().intValue(), clusterassoc, lkvalues, neighbors, startunitpos);
    }
  }