@Test
public void testExecute() throws Exception {
int uktFilesSize = 0;
String parentDir =
ResourceUtils.getFile("classpath:schedule/test-uktstatus.gpg.txt").getParent();
setUktDirectory(parentDir);
File uktDir = new File(uktDirectory);
File[] uktFiles =
uktDir.listFiles(
new FilenameFilter() {
public boolean accept(File dir, String name) {
return name.endsWith("uktstatus.gpg.txt");
}
});
if (uktFiles != null) {
uktFilesSize = uktFiles.length;
}
assertTrue("Can not read UKT files", uktFilesSize != 0);
uktImportExportScheduler.setUktDirectory(parentDir);
uktImportExportScheduler.setUktExportDirectory(parentDir);
uktImportExportScheduler.execute();
UktStatus uktStatus = ukTransplantManager.getUktStatus("9876543210");
if (uktFilesSize > 0) {
assertNotNull("UktStatus not be saved", uktStatus);
File file = ResourceUtils.getFile("classpath:schedule/ukt_rpv_export.txt");
CSVParser uktParser = new CSVParser(new FileReader(file));
uktParser.changeDelimiter(',');
String[][] uktValues = uktParser.getAllValues();
assertEquals("nhsno not same", patient.getNhsno(), uktValues[0][0]);
assertEquals("surname not same", patient.getSurname(), uktValues[0][1]);
assertEquals("forname not same", patient.getForename(), uktValues[0][2]);
assertEquals("postcode not same", patient.getPostcode(), uktValues[0][4]);
uktParser.close();
} else {
assertNull("Wrong entity exists.", uktStatus);
}
}
/**
* from a report output path get the words
*
* @param path report output path
* @param ext where the words are in the path
* @return map of words to counts and index
* @throws IOException
*/
public static LinkedHashMap<String, IndependentPair<Long, Long>> readWordCountLines(
String path, String ext) throws IOException {
String wordPath = path + ext;
Path p = HadoopToolsUtil.getInputPaths(wordPath)[0];
FileSystem fs = HadoopToolsUtil.getFileSystem(p);
FSDataInputStream toRead = fs.open(p);
BufferedReader reader = new BufferedReader(new InputStreamReader(toRead, "UTF-8"));
CSVParser csvreader = new CSVParser(reader);
long lineN = 0;
String[] next = null;
LinkedHashMap<String, IndependentPair<Long, Long>> toRet =
new LinkedHashMap<String, IndependentPair<Long, Long>>();
while ((next = csvreader.getLine()) != null && next.length > 0) {
if (next.length != 2) {
System.out.println("PROBLEM READLINE LINE: " + Arrays.toString(next));
continue;
}
toRet.put(next[0], IndependentPair.pair(Long.parseLong(next[1]), lineN));
lineN++;
}
return toRet;
}
private void readData(Reader in) throws IOException {
CSVParser creader = new CSVParser(in);
this.datavalues = new HashMap<String, double[]>();
this.titles = creader.getLine();
for (String title : titles) {
this.datavalues.put(title, new double[nentries]);
}
String[] line = null;
DateTimeFormatter parser = DateTimeFormat.forPattern("YYYY-MM-dd");
int entry = nentries - 1;
while ((line = creader.getLine()) != null) {
for (int i = 0; i < titles.length; i++) {
String title = titles[i];
if (i == 0) {
DateTime dt = parser.parseDateTime(line[i]);
this.datavalues.get(title)[entry] = dt.getMillis();
} else {
this.datavalues.get(title)[entry] = Double.parseDouble(line[i]);
}
}
entry--;
}
}