@Override
public void render(Context context, CandidateGeneListProxy value, SafeHtmlBuilder sb) {
if (value == null) return;
placeRequest.with("id", value.getId().toString());
SafeUri link =
UriUtils.fromTrustedString("#" + placeManager.buildHistoryToken(placeRequest.build()));
SafeHtml name = SafeHtmlUtils.fromString(value.getName());
SafeHtmlBuilder builder = new SafeHtmlBuilder();
builder
.append(SafeHtmlUtils.fromSafeConstant("created on "))
.append(
SafeHtmlUtils.fromString(
DateTimeFormat.getFormat(DateTimeFormat.PredefinedFormat.DATE_SHORT)
.format(value.getCreated())))
.append(SafeHtmlUtils.fromSafeConstant(" by "))
.append(
SafeHtmlUtils.fromString(
value.getOwnerUser().getFirstname() + " " + value.getOwnerUser().getLastname()));
sb.append(templates.cell(link, name, builder.toSafeHtml()));
}
@Override
protected void onReveal() {
super.onReveal();
if (isStoryDetails) {
tagsPresenter.setSearchTagHandler(this);
addVisibleHandler(CreateContentEvent.TYPE, this);
getView().setForStoryDetails();
} else {
tagsPresenter.setSearchTagHandler(null);
String historyToken =
placeManager.buildHistoryToken(getStoryDetailsPlaceRequestBuilder(false, false).build());
getView().setForStoryCard(historyToken);
}
if (isEditMode) {
StorySummary openedStoryData =
cachingService.getCachedObject(StorySummary.class, CachedObjectKeys.OPENED_STORY);
doEdit(openedStoryData);
}
}
private void initTree() {
String section_key = "section";
String subsection_key = "subsection";
TreeItem root = new TreeItem("Help");
PlaceRequest rootPlace = new PlaceRequest(NameTokens.helpPage);
tree.addItem(
new Hyperlink(
"Introduction",
placeManager.buildHistoryToken(rootPlace.with(section_key, "introduction"))))
.setUserObject("introduction");
// Phenotypes
TreeItem phenotypes_item =
new TreeItem(
new Hyperlink(
"Phenotypes",
placeManager.buildHistoryToken(rootPlace.with(section_key, "phenotypes"))));
phenotypes_item.setUserObject("phenotypes");
phenotypes_item
.addItem(
new Hyperlink(
"Uploading Phenotypes",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "phenotypes").with(subsection_key, "upload"))))
.setUserObject("phenotypes_upload");
phenotypes_item
.addItem(
new Hyperlink(
"Phenotype Format",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "phenotypes").with(subsection_key, "format"))))
.setUserObject("phenotypes_format");
tree.addItem(phenotypes_item);
// Accessions
TreeItem accession_item =
new TreeItem(
new Hyperlink(
"Accessions",
placeManager.buildHistoryToken(rootPlace.with(section_key, "accessions"))));
accession_item.setUserObject("accessions");
tree.addItem(accession_item);
// Analysis
TreeItem analysis_item =
new TreeItem(
new Hyperlink(
"Analysis",
placeManager.buildHistoryToken(rootPlace.with(section_key, "analysis"))));
analysis_item.setUserObject("analysis");
analysis_item
.addItem(
new Hyperlink(
"Navigation",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "analysis").with(subsection_key, "navigation"))))
.setUserObject("analysis_navigation");
analysis_item
.addItem(
new Hyperlink(
"Phenotypes",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "analysis").with(subsection_key, "phenotypes"))))
.setUserObject("analysis_phenotypes");
analysis_item
.addItem(
new Hyperlink(
"Datasets",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "analysis").with(subsection_key, "datasets"))))
.setUserObject("analysis_datasets");
analysis_item
.addItem(
new Hyperlink(
"Transformations",
placeManager.buildHistoryToken(
rootPlace
.with(section_key, "analysis")
.with(subsection_key, "transformations"))))
.setUserObject("analysis_transformations");
analysis_item
.addItem(
new Hyperlink(
"Results",
placeManager.buildHistoryToken(
rootPlace.with(section_key, "analysis").with(subsection_key, "results"))))
.setUserObject("analysis_results");
tree.addItem(analysis_item);
// Tutorial
/*TreeItem tutorial_item = new TreeItem(new Hyperlink("Tutorial",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial"))));
tutorial_item.setUserObject("tutorial");
tutorial_item.addItem(new Hyperlink("1.) Uploading Phenotypes",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "uploading")))).setUserObject("tutorial_uploading");
tutorial_item.addItem(new Hyperlink("2.) Creating subset",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "subset")))).setUserObject("tutorial_subset");
tutorial_item.addItem(new Hyperlink("3.) Changing transformation",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "transformation")))).setUserObject("tutorial_transformation");
tutorial_item.addItem(new Hyperlink("4.) Running GWAS",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "gwas")))).setUserObject("tutorial_gwas");
tutorial_item.addItem(new Hyperlink("5.) Viewing Results",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "results")))).setUserObject("tutorial_results");
tutorial_item.addItem(new Hyperlink("6.) Running Step-Wise GWAS",placeManager.buildHistoryToken(rootPlace.with(section_key, "tutorial").with(subsection_key, "gwas_step")))).setUserObject("tutorial_gwas_step");
tree.addItem(tutorial_item);*/
Iterator<TreeItem> iterator = tree.treeItemIterator();
while (iterator.hasNext()) {
iterator.next().setState(true, false);
}
}
