public static void main(String[] args) throws Exception {
    InstanceList instances = InstanceList.load(new File(args[0]));
    int numTopics = Integer.parseInt(args[1]);
    ParallelTopicModel model = new ParallelTopicModel(numTopics, 5.0, 0.01);
    model.addInstances(instances);
    model.setNumIterations(1000);

    model.estimate();

    TopicModelDiagnostics diagnostics = new TopicModelDiagnostics(model, 20);

    if (args.length == 3) {
      PrintWriter out = new PrintWriter(args[2]);
      out.println(diagnostics.toXML());
      out.close();
    }
  }
  public TestCRFPipe(String trainingFilename) throws IOException {

    ArrayList<Pipe> pipes = new ArrayList<Pipe>();

    PrintWriter out = new PrintWriter("test.out");

    int[][] conjunctions = new int[3][];
    conjunctions[0] = new int[] {-1};
    conjunctions[1] = new int[] {1};
    conjunctions[2] = new int[] {-2, -1};

    pipes.add(new SimpleTaggerSentence2TokenSequence());
    // pipes.add(new FeaturesInWindow("PREV-", -1, 1));
    // pipes.add(new FeaturesInWindow("NEXT-", 1, 2));
    pipes.add(new OffsetConjunctions(conjunctions));
    pipes.add(new TokenTextCharSuffix("C1=", 1));
    pipes.add(new TokenTextCharSuffix("C2=", 2));
    pipes.add(new TokenTextCharSuffix("C3=", 3));
    pipes.add(new RegexMatches("CAPITALIZED", Pattern.compile("^\\p{Lu}.*")));
    pipes.add(new RegexMatches("STARTSNUMBER", Pattern.compile("^[0-9].*")));
    pipes.add(new RegexMatches("HYPHENATED", Pattern.compile(".*\\-.*")));
    pipes.add(new RegexMatches("DOLLARSIGN", Pattern.compile("\\$.*")));
    pipes.add(new TokenFirstPosition("FIRSTTOKEN"));
    pipes.add(new TokenSequence2FeatureVectorSequence());
    pipes.add(new SequencePrintingPipe(out));

    Pipe pipe = new SerialPipes(pipes);

    InstanceList trainingInstances = new InstanceList(pipe);

    trainingInstances.addThruPipe(
        new LineGroupIterator(
            new BufferedReader(
                new InputStreamReader(new GZIPInputStream(new FileInputStream(trainingFilename)))),
            Pattern.compile("^\\s*$"),
            true));

    out.close();
  }