Example #1
0
  @Override
  public String toString() {
    StringBuffer text = new StringBuffer();
    text.append("\nsIB\n===\n");
    text.append("\nNumber of clusters: " + m_numCluster + "\n");

    for (int j = 0; j < m_numCluster; j++) {
      text.append(
          "\nCluster: "
              + j
              + " Size : "
              + bestT.size(j)
              + " Prior probability: "
              + Utils.doubleToString(bestT.Pt[j], 4)
              + "\n\n");
      for (int i = 0; i < m_numAttributes; i++) {
        text.append("Attribute: " + m_data.attribute(i).name() + "\n");
        text.append(
            "Probability given the cluster = "
                + Utils.doubleToString(bestT.Py_t.get(i, j), 4)
                + "\n");
      }
    }
    return text.toString();
  }
Example #2
0
 /**
  * Compute the JS divergence between an instance and a cluster, used for test data
  *
  * @param inst instance to be clustered
  * @param t index of the cluster
  * @param pi1
  * @param pi2
  * @return the JS divergence
  */
 private double JS(Instance inst, int t, double pi1, double pi2) {
   if (Math.min(pi1, pi2) <= 0) {
     System.out.format(
         "Warning: zero or negative weights in JS calculation! (pi1 %s, pi2 %s)\n", pi1, pi2);
     return 0;
   }
   double sum = Utils.sum(inst.toDoubleArray());
   double kl1 = 0.0, kl2 = 0.0, tmp = 0.0;
   for (int i = 0; i < inst.numValues(); i++) {
     tmp = inst.valueSparse(i) / sum;
     if (tmp != 0) {
       kl1 += tmp * Math.log(tmp / (tmp * pi1 + pi2 * bestT.Py_t.get(inst.index(i), t)));
     }
   }
   for (int i = 0; i < m_numAttributes; i++) {
     if ((tmp = bestT.Py_t.get(i, t)) != 0) {
       kl2 += tmp * Math.log(tmp / (inst.value(i) * pi1 / sum + pi2 * tmp));
     }
   }
   return pi1 * kl1 + pi2 * kl2;
 }