/**
* abnerNER would analyze words and give confidence
*
* @param args sentences to be processed
* @param arg0 information input
* @throws AnalysisEngineProcessException
*/
public static void abnerNER(String[] args, JCas arg0) {
HashMap<String, Double> ConfMap = new HashMap<String, Double>();
/** use abner to find gene names from words */
Tagger t = new Tagger();
for (int i = 1; i < args.length; ++i) {
String s = args[i];
String[][] ents = t.getEntities(s);
/** use HashMap to store words selected by Abner */
for (int j = 0; j < ents[0].length; j++) {
ConfMap.put(ents[0][j], 1.0);
}
}
// TODO Auto-generated method stub
FSIterator<org.apache.uima.jcas.tcas.Annotation> ite =
arg0.getAnnotationIndex(NameTag.type).iterator();
while (ite.hasNext()) {
/** get the words selected by LingPipe */
String name = ((NameTag) ite.get()).getText();
/** set the confidence for words selected by both LingPipe and Abner as 1 */
if (ConfMap.containsKey(name)) {
((NameTag) ite.get()).setConfidenceAbner(1.0);
} else {
((NameTag) ite.get()).setConfidenceAbner(0.0);
}
ite.next();
}
}
public static final void createPost(Post post) {
Connection connection = null;
PreparedStatement stmt = null;
String sql =
"INSERT INTO post ("
+ Post.LUSER_ID
+ ","
+ Post.LINK
+ " ,"
+ Post.BODY
+ ","
+ Post.MIME
+ ") VALUES ( ?, ?, ?, ? ) RETURNING id";
try {
connection = DBConnection.getConnection();
stmt = connection.prepareStatement(sql);
stmt.setString(1, post.getUser_id());
stmt.setString(2, (post.getLink() != null) ? post.getLink().toString() : "null");
stmt.setString(3, post.getBody());
stmt.setString(4, post.getMime());
ResultSet id = stmt.executeQuery();
id.next();
Logger.getLogger(PostMapper.class.getName())
.log(Level.SEVERE, "post number " + id.getInt("id"));
if (post.getTags() != null) {
post.setId(id.getInt("id"));
Tagger.tagAs(post);
}
stmt.close();
} catch (SQLException ex) {
Logger.getLogger(PostMapper.class.getName()).log(Level.SEVERE, null, ex);
} finally {
if (stmt != null)
try {
stmt.close();
} catch (SQLException e1) {
e1.printStackTrace();
}
if (connection != null) {
try {
connection.close();
} catch (SQLException e) {
e.printStackTrace();
}
}
}
}
String tagFor(final String str, final String fallback) {
return tagger.tagFor(str, fallback);
}
