@Test(dataProvider = "dataLines")
public void testDecode1(
String str, String contig, int start, int end, List<String> header, List<String> vals) {
TableCodec tc = new TableCodec();
final TableFeature decode = tc.decode(str);
Assert.assertEquals(decode.getContig(), contig, "contig");
Assert.assertEquals(decode.getStart(), start, "start");
Assert.assertEquals(decode.getEnd(), end, "end");
Assert.assertEquals(decode.getHeader(), header, decode.getHeader().toString());
Assert.assertEquals(decode.columnCount(), vals.size());
for (int i = 0; i < decode.columnCount(); i++) {
Assert.assertEquals(decode.getValue(i), vals.get(i), "i:" + i);
}
}
@Test
public void testDecodeHeader2() {
TableCodec tc = new TableCodec();
final String str2 = "1:1 1 2 3";
LineReader reader = makeReader(asList("HEADER a b c", str2));
LineIterator li = new LineIteratorImpl(reader);
List<String> hd = tc.readActualHeader(li);
Assert.assertEquals(hd, asList("HEADER", "a", "b", "c"));
final TableFeature decode = tc.decode(str2);
Assert.assertEquals(decode.get("a"), "1");
Assert.assertEquals(decode.get("b"), "2");
Assert.assertEquals(decode.get("c"), "3");
Assert.assertEquals(decode.getLocation().getContig(), "1");
Assert.assertEquals(decode.getContig(), "1");
Assert.assertEquals(decode.getLocation().getStart(), 1);
Assert.assertEquals(decode.getLocation().getEnd(), 1);
}