/** For debugging purposes only. (Stopped updating after myCollection_Table) */
public void printCreateTables() {
System.out.println(mySample_Table.toCreateString());
System.out.println(myOwner_Table.toCreateString());
System.out.println(myCross_Reference_Table.toCreateString());
System.out.println(mySubmitter_Table.toCreateString());
System.out.println(myCollection_Table.toCreateString());
}
/** Pulls items out of the XML document. */
private void parseBioSampleDebug() {
// get the root element
if (myDocument != null) {
Element lRootElement = myDocument.getDocumentElement();
NodeList lNodeList = lRootElement.getElementsByTagName("BioSample");
StringBuffer lBuffer = new StringBuffer();
if (lNodeList != null && lNodeList.getLength() > 0) {
for (int i = 0, n = lNodeList.getLength(); i < n; i++) {
Element lBiosampleElement = (Element) lNodeList.item(i);
lBuffer.append(mySample_Table.parseBioSampleXML(lBiosampleElement));
lBuffer.append(myHuman_Host_Table.parseBioSampleXML(lBiosampleElement));
lBuffer.append(myNon_Human_Host_Table.parseBioSampleXML(lBiosampleElement));
StringBuffer lCollectionTableBuffer =
myCollection_Table.parseBioSampleXML(lBiosampleElement);
lBuffer.append(lCollectionTableBuffer);
lBuffer.append(mySubmitter_Table.parseBioSampleXML(lBiosampleElement));
lBuffer.append(
myOwner_Table.parseBioSampleXML(
lBiosampleElement,
mySubmitter_Table,
myCollection_Owner_Table,
lCollectionTableBuffer));
lBuffer.append(myCross_Reference_Table.parseBioSampleXML(lBiosampleElement));
lBuffer.append(myStudy_Method_Table.parseBioSampleXML(lBiosampleElement));
try {
myStatement.execute(lBuffer.toString());
} catch (SQLException sqle) {
sqle.printStackTrace(System.out);
}
lBuffer.setLength(0);
}
}
}
}
