/**
* Reads a file from the given InputStream and saves it into the local download directory
*
* @param in The InputStream from which to read the file
* @param start The starting byte of the piece that will be downloaded from this peer
* @param end The end byte (exclusive) of the piece that will be downloaded from this peer
* @throws java.io.IOException if an error occurs while downloading the file
*/
private void saveFile(InputStream in, int start, int end) throws IOException {
if (start >= end) {
throw new IllegalStateException(
"Start byte (" + start + ") must be less than the end byte (" + end + ")");
}
RandomAccessFile fileOut = null;
try {
File downloadFile = new File(Client.downloadDir, _file);
// Open the file in read/write mode with synchronous content/metadata writing
fileOut = new RandomAccessFile(downloadFile, "rws");
fileOut.seek(start);
byte[] bytes = new byte[_chunkSize];
int bytesRead;
int pos = start;
while ((bytesRead = in.read(bytes, 0, _chunkSize)) >= 0 && pos < end) {
fileOut.write(bytes, 0, Math.min(bytesRead, end - pos));
pos += bytesRead;
}
} catch (SocketException e) {
System.err.println(
"[DownloadFromPeerRunnable] Disconnected from peer at " + _peer.getInetAddress());
_callback.onFinishChunk(_file, false);
} finally {
if (fileOut != null) {
try {
fileOut.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
}
private void execFormatTrackTask() {
File file = this.ioFile;
long pos = this.ioFilePos;
int cnt = this.ioByteCnt;
if ((file != null) && (pos >= 0) && (cnt > 0)) {
boolean err = false;
RandomAccessFile raf = null;
try {
raf = new RandomAccessFile(file, "rw");
raf.seek(pos);
while (cnt > 0) {
raf.write(0);
--cnt;
}
raf.close();
raf = null;
} catch (IOException ex) {
err = true;
if (!this.writeErrShown) {
this.writeErrShown = true;
EmuUtil.fireShowError(this.owner, null, ex);
}
} finally {
EmuUtil.doClose(raf);
}
if (err) {
this.errorReg = ERROR_UNCORRECTABLE_DATA;
this.statusReg |= STATUS_ERROR;
}
fireInterrupt();
}
}
public void saveMetaData() throws IOException {
pageFile.seek(offset);
pageFile.writeInt(nextPageId);
pageFile.writeInt(currentFill);
pageFile.writeInt(bloomfilter);
pageFile.writeByte(type);
}
public String[] getNextRecord() {
try {
String ans[] = new String[3];
String line;
while ((line = filein.readLine()) != null) {
// get description
if (!line.substring(0, 1).equals("@")) return null;
ans[0] = line.substring(1);
String seq = "";
String qual = "";
while ((line = filein.readLine()) != null) {
if (line.matches("[ACTGNacgtnURYSWKMBDHVN.-]*")) {
seq += line;
} else {
if (!line.substring(0, 1).equals("+")) return null;
// ans[2] = line.substring(1);
while ((line = filein.readLine()) != null) {
qual += line;
if (seq.length() <= qual.length()) {
ans[1] = seq;
ans[2] = qual;
return ans;
}
}
}
}
}
return null;
} catch (Exception e) {
return null;
}
}
public void run() {
try {
System.out.println("socked");
sock = new Socket(ii, pp);
oout = new ObjectOutputStream(sock.getOutputStream());
oout.flush();
oin = new ObjectInputStream(sock.getInputStream());
System.out.println("read ");
rf.setLength(0);
do {
System.out.println("read ");
file f = (file) oin.readObject();
if (f.length <= 0) break;
write(f);
} while (true);
oout.close();
oin.close();
rf.close();
sock.close();
xx.ConfirmPopup("Haua file namano shesh!!!");
} catch (Exception e) {
e.printStackTrace();
}
}
/**
* Add the given text string to the end of a given file.
*
* @param inStr The string to be added.
* @param fileStr the name of the file to be added.
*/
public static void addStringToFile(String inStr, String fileStr) throws Exception {
RandomAccessFile raFile = new RandomAccessFile(fileStr, "rw");
raFile.seek(raFile.length());
raFile.writeBytes(inStr);
raFile.close();
}
/**
* Loads a query from the mgf file.
*
* @param file The file to read the query from.
* @param indexElement The index element pointing to that specific ms2 query.
* @return
* @oaram index The query's 1-based index in the MGF file. This index is stored in the returned
* Ms2Query object.
*/
private static Ms2Query loadIndexedQueryFromFile(File file, IndexElement indexElement, int index)
throws JMzReaderException {
RandomAccessFile accFile = null;
try {
accFile = new RandomAccessFile(file, "r");
// read the indexed element
byte[] byteBuffer = new byte[indexElement.getSize()];
// read the file from there
accFile.seek(indexElement.getStart());
accFile.read(byteBuffer);
String ms2Buffer = new String(byteBuffer);
// create the query
Ms2Query query = new Ms2Query(ms2Buffer, index);
return query;
} catch (FileNotFoundException e) {
throw new JMzReaderException("MGF file could not be found.", e);
} catch (IOException e) {
throw new JMzReaderException("Failed to read from MGF file", e);
} finally {
if (accFile != null) {
try {
accFile.close();
} catch (IOException e) {
// ignore
}
}
}
}
public static boolean clearWorldReference(World world) {
String worldname = world.getName();
if (regionfiles == null) return false;
if (rafField == null) return false;
ArrayList<Object> removedKeys = new ArrayList<Object>();
try {
for (Object o : regionfiles.entrySet()) {
Map.Entry e = (Map.Entry) o;
File f = (File) e.getKey();
if (f.toString().startsWith("." + File.separator + worldname)) {
SoftReference ref = (SoftReference) e.getValue();
try {
RegionFile file = (RegionFile) ref.get();
if (file != null) {
RandomAccessFile raf = (RandomAccessFile) rafField.get(file);
raf.close();
removedKeys.add(f);
}
} catch (Exception ex) {
ex.printStackTrace();
}
}
}
} catch (Exception ex) {
MyWorlds.log(
Level.WARNING, "Exception while removing world reference for '" + worldname + "'!");
ex.printStackTrace();
}
for (Object key : removedKeys) {
regionfiles.remove(key);
}
return true;
}
/**
* Copy the given byte range of the given input to the given output.
*
* @param input The input to copy the given range to the given output for.
* @param output The output to copy the given range from the given input for.
* @param start Start of the byte range.
* @param length Length of the byte range.
* @throws IOException If something fails at I/O level.
*/
private static void copy(RandomAccessFile input, OutputStream output, long start, long length)
throws IOException {
byte[] buffer = new byte[DEFAULT_BUFFER_SIZE];
int read;
if (input.length() == length) {
// Write full range.
while ((read = input.read(buffer)) > 0) {
output.write(buffer, 0, read);
}
} else {
// Write partial range.
input.seek(start);
long toRead = length;
while ((read = input.read(buffer)) > 0) {
if ((toRead -= read) > 0) {
output.write(buffer, 0, read);
} else {
output.write(buffer, 0, (int) toRead + read);
break;
}
}
}
}
private ChannelFuture sendFile(ChannelHandlerContext ctx, Channel ch, FileChunk file)
throws IOException {
RandomAccessFile raf;
try {
raf = new RandomAccessFile(file.getFile(), "r");
} catch (FileNotFoundException fnfe) {
return null;
}
ChannelFuture writeFuture;
if (ch.getPipeline().get(SslHandler.class) != null) {
// Cannot use zero-copy with HTTPS.
writeFuture = ch.write(new ChunkedFile(raf, file.startOffset(), file.length(), 8192));
} else {
// No encryption - use zero-copy.
final FileRegion region =
new DefaultFileRegion(raf.getChannel(), file.startOffset(), file.length());
writeFuture = ch.write(region);
writeFuture.addListener(
new ChannelFutureListener() {
public void operationComplete(ChannelFuture future) {
region.releaseExternalResources();
}
});
}
return writeFuture;
}
public void pdfRead() {
try {
String INPUTFILE = "example_2.pdf";
File file = new File(INPUTFILE);
RandomAccessFile raf = new RandomAccessFile(file, "r");
FileChannel channel = raf.getChannel();
ByteBuffer buf = channel.map(FileChannel.MapMode.READ_ONLY, 0, channel.size());
PDFFile pdffile = new PDFFile(buf);
// draw the first page to an image
PDFPage page = pdffile.getPage(0);
// get the width and height for the doc at the default zoom
Rectangle rect =
new Rectangle(0, 0, (int) page.getBBox().getWidth(), (int) page.getBBox().getHeight());
// generate the image
Image img =
page.getImage(
rect.width,
rect.height, // width & height
rect, // clip rect
null, // null for the ImageObserver
true, // fill background with white
true // block until drawing is done
);
frame.getContentPane().add(new JLabel(new ImageIcon(img)));
frame.pack();
frame.setSize(600, 700);
} catch (Exception e) {
System.out.println(e);
}
}
/** Met dans le cache le résultat de l'url indiquée */
public boolean putInCache(String url) throws Exception {
// Lecture
MyInputStream in = null;
try {
in = Util.openStream(url);
byte buf[] = in.readFully();
// Nettoyage et Ecriture
String id = codage(url);
File g = new File(dir + Util.FS + id);
g.delete();
RandomAccessFile f = null;
try {
f = new RandomAccessFile(dir + Util.FS + id, "rw");
f.write(buf);
} finally {
if (f != null) f.close();
}
aladin.trace(3, "Put in cache [" + url + "]");
return true;
} catch (Exception e) {
if (aladin.levelTrace >= 3) e.printStackTrace();
} finally {
if (in != null) in.close();
}
return false;
}
/**
* Read a file offset from the file PST Files have this tendency to store file offsets (pointers)
* in 8 little endian bytes. Convert this to a long for seeking to.
*
* @param in handle for PST file
* @param startOffset where to read the 8 bytes from
* @return long representing the read location
* @throws IOException
*/
protected long extractLEFileOffset(long startOffset) throws IOException {
long offset = 0;
if (this.getPSTFileType() == PSTFile.PST_TYPE_ANSI) {
in.seek(startOffset);
byte[] temp = new byte[4];
in.read(temp);
offset |= temp[3] & 0xff;
offset <<= 8;
offset |= temp[2] & 0xff;
offset <<= 8;
offset |= temp[1] & 0xff;
offset <<= 8;
offset |= temp[0] & 0xff;
} else {
in.seek(startOffset);
byte[] temp = new byte[8];
in.read(temp);
offset = temp[7] & 0xff;
long tmpLongValue;
for (int x = 6; x >= 0; x--) {
offset = offset << 8;
tmpLongValue = (long) temp[x] & 0xff;
offset |= tmpLongValue;
}
}
return offset;
}
/* write a chunk data to the region file at specified sector number */
private void write(int sectorNumber, byte[] data, int length) throws IOException {
debugln(" " + sectorNumber);
file.seek(sectorNumber * SECTOR_BYTES);
file.writeInt(length + 1); // chunk length
file.writeByte(VERSION_DEFLATE); // chunk version number
file.write(data, 0, length); // chunk data
}
public static DigestBlob resumeTransfer(
BlobContainer blobContainer, String digest, UUID transferId, long currentPos) {
DigestBlob digestBlob = new DigestBlob(blobContainer, digest, transferId);
digestBlob.file = getTmpFilePath(blobContainer, digest, transferId);
try {
logger.trace("Resuming DigestBlob {}. CurrentPos {}", digest, currentPos);
digestBlob.headFileChannel = new FileOutputStream(digestBlob.file, false).getChannel();
digestBlob.headLength = currentPos;
digestBlob.headSize = new AtomicLong();
digestBlob.headCatchedUpLatch = new CountDownLatch(1);
RandomAccessFile raf = new RandomAccessFile(digestBlob.file, "rw");
raf.setLength(currentPos);
raf.close();
FileOutputStream outputStream = new FileOutputStream(digestBlob.file, true);
digestBlob.fileChannel = outputStream.getChannel();
} catch (IOException ex) {
logger.error("error resuming transfer of {}, id: {}", ex, digest, transferId);
return null;
}
return digestBlob;
}
// see DbFile.java for javadocs
public ArrayList<Page> insertTuple(TransactionId tid, Tuple t)
throws DbException, IOException, TransactionAbortedException {
// some code goes here
BufferPool bp = Database.getBufferPool();
int id = getId(), i, slots;
ArrayList<Page> retlist = new ArrayList<Page>();
PageId pid = null;
HeapPage p = null;
for (i = 0; i < numPages(); i++) {
pid = new HeapPageId(id, i);
p = (HeapPage) bp.getPage(tid, pid, Permissions.READ_WRITE);
slots = p.getNumEmptySlots();
if (slots > 0) {
p.insertTuple(t);
retlist.add(p);
return retlist;
}
}
// create new page and add tuple to it
pid = new HeapPageId(id, i);
raf.setLength(raf.length() + BufferPool.PAGE_SIZE);
p = (HeapPage) bp.getPage(tid, pid, Permissions.READ_WRITE);
p.insertTuple(t);
retlist.add(p);
return retlist;
}
/**
* Reads an array of strings from the TIFF file.
*
* @param count Number of strings to read
* @param value Offset from which to read
*/
protected String[] readASCIIArray(long count, long value) throws IOException {
_raf.seek(value);
int nstrs = 0;
List list = new LinkedList();
byte[] buf = new byte[(int) count];
_raf.read(buf);
StringBuffer strbuf = new StringBuffer();
for (int i = 0; i < count; i++) {
int b = buf[i];
if (b == 0) {
list.add(strbuf.toString());
strbuf.setLength(0);
} else {
strbuf.append((char) b);
}
}
/* We can't use ArrayList.toArray because that returns an
Object[], not a String[] ... sigh. */
String[] strs = new String[nstrs];
ListIterator iter = list.listIterator();
for (int i = 0; i < nstrs; i++) {
strs[i] = (String) iter.next();
}
return strs;
}
/**
* Ecrit la piece donnée dans le fichier temporaire sur le disque
*
* @param piece : pièce à écrire
* @param num : numéros de la pièce
*/
private synchronized void writePieceTmpFile(byte[] piece, int num) {
if (num < 0 || num >= this.nbPieces()) {
throw new IllegalArgumentException();
}
if (piece.length > _piecesize) {
throw new IllegalArgumentException();
}
try {
RandomAccessFile writer_tmp = new RandomAccessFile(this, "rw");
FileChannel writer = writer_tmp.getChannel();
int index_piece = ((int) this.length() - this.headerSize()) / _piecesize;
if (piece.length < _piecesize) {
piece = Arrays.copyOf(piece, _piecesize);
}
Tools.write(writer, 4 + _key.length() + 4 + 4 + 4 * num, index_piece);
Tools.write(writer, this.headerSize() + _piecesize * index_piece, piece);
writer.force(true);
writer_tmp.close();
} catch (Exception e) {
System.out.println("Unable to write tmp file piece");
e.printStackTrace();
}
}
/**
* Fills the buffer with more data, taking into account shuffling and other tricks for dealing
* with marks. Assumes that it is being called by a synchronized method. This method also assumes
* that all data has already been read in, hence pos > count.
*/
private void fill() throws IOException {
if (markpos < 0) {
pos = 0; /* no mark: throw away the buffer */
bufpos += count;
} else if (pos >= buf.length) /* no room left in buffer */
if (markpos > 0) {
/* can throw away early part of the buffer */
int sz = pos - markpos;
System.arraycopy(buf, markpos, buf, 0, sz);
pos = sz;
bufpos += markpos;
markpos = 0;
} else if (buf.length >= marklimit) {
markpos = -1; /* buffer got too big, invalidate mark */
pos = 0; /* drop buffer contents */
bufpos += count;
} else {
/* grow buffer */
int nsz = pos * 2;
if (nsz > marklimit) nsz = marklimit;
byte nbuf[] = new byte[nsz];
System.arraycopy(buf, 0, nbuf, 0, pos);
buf = nbuf;
}
count = pos;
// limit to datalen
int len = buf.length - pos;
if (bufpos - start + pos + len > datalen) len = (int) (datalen - (bufpos - start + pos));
synchronized (in) {
in.seek(bufpos + pos);
int n = in.read(buf, pos, len);
if (n > 0) count = n + pos;
}
}
public void write(Tag tag, RandomAccessFile raf, RandomAccessFile tempRaf)
throws CannotWriteException, IOException {
FileChannel fc = raf.getChannel();
int oldTagSize = 0;
if (tagExists(fc)) {
// read the length
if (!canOverwrite(raf))
throw new CannotWriteException("Overwritting of this kind of ID3v2 tag not supported yet");
fc.position(6);
ByteBuffer buf = ByteBuffer.allocate(4);
fc.read(buf);
oldTagSize = (buf.get(0) & 0xFF) << 21;
oldTagSize += (buf.get(1) & 0xFF) << 14;
oldTagSize += (buf.get(2) & 0xFF) << 7;
oldTagSize += buf.get(3) & 0xFF;
oldTagSize += 10;
// System.err.println("Old tag size: "+oldTagSize);
int newTagSize = tc.getTagLength(tag);
if (oldTagSize >= newTagSize) {
// replace
// System.err.println("Old ID32v Tag found, replacing the old
// tag");
fc.position(0);
fc.write(tc.convert(tag, oldTagSize - newTagSize));
// ID3v2 Tag Written
return;
}
}
// create new tag with padding
// System.err.println("Creating a new ID3v2 Tag");
fc.position(oldTagSize);
if (fc.size() > 15 * 1024 * 1024) {
FileChannel tempFC = tempRaf.getChannel();
tempFC.position(0);
tempFC.write(tc.convert(tag, Id3v2TagCreator.DEFAULT_PADDING));
tempFC.transferFrom(fc, tempFC.position(), fc.size() - oldTagSize);
fc.close();
} else {
ByteBuffer[] content = new ByteBuffer[2];
content[1] = ByteBuffer.allocate((int) fc.size());
fc.read(content[1]);
content[1].rewind();
content[0] = tc.convert(tag, Id3v2TagCreator.DEFAULT_PADDING);
fc.position(0);
fc.write(content);
}
}
public int bubbleSort() throws Exception {
boolean swapped = true;
int j = 0;
int counter = 0;
while (swapped) {
swapped = false;
j++;
for (int i = 0; i < length() - j; i++) {
file.seek(i * 4);
int one = file.readInt();
int two = file.readInt();
if (one > two) {
file.seek(i * 4);
file.writeInt(two);
file.writeInt(one);
swapped = true;
counter++;
}
}
}
return counter;
}
/**
* Create an index file for the specified column.
*
* @param colname the column's name
* @return the time it took to run this method.
* @throws Exception
*/
public long createIndexFile() throws Exception {
long s = System.currentTimeMillis();
// fill idx file with hashsize empty records/lines (empty means filled with spaces)
int pkindex = def.getColPosition(def.getPK());
if (pkindex == -1) {
throw new Exception("Primary key does not exist");
}
Integer[] size = def.getSizes();
int recordSize = idxFixedRecordLength() + size[pkindex];
StringBuffer temp = new StringBuffer();
for (int i = 0; i < recordSize - 2; i++) {
temp.append(" ");
}
indexFile.seek(0);
for (int i = 0; i < this.hashsize; i++) {
indexFile.writeBytes(temp + "\r\n");
}
int table_pos = 0;
// create an index entry for each row present in the tbl-file (for column=colname)
String line = null;
tableFile.seek(0);
while ((line = tableFile.readLine()) != null) {
// get column value (don't strip the spaces)
String pkvalue = line.split("#")[pkindex];
addIndexEntry(table_pos, pkvalue);
table_pos++;
}
long e = System.currentTimeMillis();
return e - s;
}
public double getProgress() {
try {
return 1.0 * filein.getFilePointer() / (1.0 * filein.length());
} catch (IOException e) {
return 1.0;
}
}
/**
* Delete an index entry in the idx file of the specified column.
*
* @param colname the column's name
* @param idxPos index entry (line nr) to be deleted
* @throws Exception
*/
protected long deleteIndexEntry(String colname, int idxPos) throws Exception {
long s = System.currentTimeMillis();
if (!indexExists(colname)) {
throw new Exception("No index created");
}
int pkindex = def.getColPosition(colname);
if (pkindex == -1) {
throw new Exception("Column does not exist");
}
Integer[] size = def.getSizes();
int recordSize = idxFixedRecordLength() + size[pkindex];
indexFile.seek(idxPos * recordSize);
String sLine = indexFile.readLine();
String[] parts = sLine.split("#");
if (Integer.parseInt(parts[0].trim()) != idxPos) {
throw new Exception("Index not found in index file");
} else {
indexFile.seek(idxPos * recordSize + 6);
String flag = "D";
indexFile.write(flag.toString().getBytes());
}
long e = System.currentTimeMillis();
return e - s;
}
// call this method to write the description to the file
// the file pointer must be already positioned
// the description must have been set
private void writeDescription() throws IOException {
if (description.length() > DESCRIPTION_LENGTH)
description = description.substring(0, DESCRIPTION_LENGTH);
outStream.writeChars(description);
for (int j = 0; j < (DESCRIPTION_LENGTH - description.length()); j++) outStream.writeChar(' ');
}
public static void main(String[] args) {
/*System.out.println(modular_exponent_32(2,36,37));
System.out.println(modular_exponent_32(2,18,37));
System.out.println(modular_exponent_32(2,9,37));
int d = Integer.numberOfTrailingZeros(64);
System.out.println(d);
*/
int counter = how_many_primes(1000000);
System.out.println(counter);
try {
RandomAccessFile out = new RandomAccessFile("mrprimes.txt", "rw");
out.writeBytes("2\n");
for (int i = 3; i < 1000000; i += 2) {
if (miller_rabin_32(i)) {
out.writeBytes(Integer.toString(i) + "\n");
}
}
// for (int i=0; i<counter; i++){
// out.seek(i*4);
// System.out.println(","+out.readInt());
// }
out.close();
} catch (IOException e) {
}
System.out.println(miller_rabin_32(1105));
}
public int luaCB_read(Lua l, LuaPlugin plugin) {
l.pushNil();
l.pushNil();
try {
long offset = (long) l.checkNumber(2);
int length = (int) l.checkNumber(3);
if (length <= 0) {
l.pushNil();
l.pushString("Length is not positive");
return 2;
}
byte[] tmp = new byte[length];
object.seek(offset);
length = object.read(tmp);
if (length < 0) {
l.pushNil();
l.pushNil();
return 2;
}
StringBuffer buf = new StringBuffer(length);
for (byte x : tmp) buf.appendCodePoint((int) x & 0xFF);
l.push(buf.toString());
} catch (IOException e) {
l.pushNil();
l.pushString("IOException: " + e.getMessage());
return 2;
}
return 1;
}
@Override
public ByteBuffer readPage(File file, long position, ByteBuffer pageBuffer)
throws IOException, InterruptedException {
long start = System.currentTimeMillis();
RandomAccessFile randomAccessFile = randomAccessFile(file);
try {
randomAccessFile.seek(position);
randomAccessFile.readFully(pageBuffer.array(), pageBuffer.arrayOffset(), pageSizeBytes);
if (Thread.interrupted()) {
throw new InterruptedException();
}
long stop = System.currentTimeMillis();
if (LOG.isLoggable(Level.FINE)) {
LOG.log(
Level.FINE,
"Read page at {0} of {1}: {2} msec",
new Object[] {position, file, stop - start});
}
} catch (EOFException e) {
LOG.log(
Level.SEVERE,
"Caught EOFException while reading {0}, position {1}",
new Object[] {file, position});
LOG.log(Level.SEVERE, "stack", e);
throw e;
} finally {
randomAccessFile.close();
}
return pageBuffer;
}
public void loadMetaData() throws IOException {
pageFile.seek(offset);
nextPageId = pageFile.readInt();
currentFill = pageFile.readInt();
bloomfilter = pageFile.readInt();
type = pageFile.readByte();
}
/** @param workTokDir Token directory (common for multiple nodes). */
private void cleanupResources(File workTokDir) {
RandomAccessFile lockFile = null;
FileLock lock = null;
try {
lockFile = new RandomAccessFile(new File(workTokDir, LOCK_FILE_NAME), "rw");
lock = lockFile.getChannel().lock();
if (lock != null) processTokenDirectory(workTokDir);
else if (log.isDebugEnabled())
log.debug(
"Token directory is being processed concurrently: " + workTokDir.getAbsolutePath());
} catch (OverlappingFileLockException ignored) {
if (log.isDebugEnabled())
log.debug(
"Token directory is being processed concurrently: " + workTokDir.getAbsolutePath());
} catch (FileLockInterruptionException ignored) {
Thread.currentThread().interrupt();
} catch (IOException e) {
U.error(log, "Failed to process directory: " + workTokDir.getAbsolutePath(), e);
} finally {
U.releaseQuiet(lock);
U.closeQuiet(lockFile);
}
}
