/**
* Tests getting the project's collections
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testGetProjectsCollections()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq =
newMockRequest("GET", projectOne.getId() + "/collections", "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
when(requestUtil.buildRequestUrl(any(HttpServletRequest.class)))
.thenReturn(projectOne.getId() + "/collections");
controller.setAuthenticatedUser(admin);
controller.handleProjectCollectionsGetRequest(
projectOne.getId(), mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(resp.getErrorMessage(), 200, resp.getStatus());
Bop returnedBop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(returnedBop);
Set<Collection> collections = returnedBop.getCollections();
assertNotNull(collections);
assertEquals(1, collections.size());
}
/**
* Test getting a project that does not exist
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testGetNonExistingProject()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
when(requestUtil.buildRequestUrl(any(HttpServletRequest.class))).thenReturn(" ");
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq =
newMockRequest("GET", "/project/" + "cowsarethebest", "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
controller.setAuthenticatedUser(admin);
controller.handleProjectGetRequest(projectOne.getId(), mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(404, resp.getStatus());
}
/**
* Tests adding a project through the API
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testAddProject()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
Project newProject = new Project();
newProject.setName("Test Project To Add");
newProject.setDescription("adding this project");
List<String> numbers = new ArrayList<String>();
numbers.add("1");
numbers.add("2");
newProject.setNumbers(numbers);
newProject.setFundingEntity("The Fed");
newProject.setStartDate(new DateTime(2012, 5, 4, 0, 0));
newProject.setEndDate(new DateTime(2013, 12, 23, 0, 0));
newProject.addPi(admin.getId());
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq = newMockRequest("POST", "/project", "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
ByteArrayOutputStream sink = new ByteArrayOutputStream();
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(admin);
controller.handleProjectPostRequest(mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
assertEquals(201, resp.getStatus());
Bop bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
Set<Project> projects = bop.getProjects();
assertNotNull(projects);
assertEquals(1, projects.size());
Project returnedProject = projects.iterator().next();
// Have to set the original project id to the id set by the biz service.
newProject.setId(returnedProject.getId());
assertEquals(newProject, returnedProject);
}
/**
* Tests that the project metadata is successfully updated.
*
* @throws InvalidXmlException
* @throws ProjectServiceException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testUpdateProject()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
Project newProject = new Project(projectOne);
newProject.setName("Update");
newProject.setDescription("foo-update");
newProject.setEndDate(new DateTime(2014, 2, 10, 0, 0));
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq =
newMockRequest("PUT", projectOne.getId(), "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
ByteArrayOutputStream sink = new ByteArrayOutputStream();
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(admin);
controller.handleUpdateProjectRequest(
projectOne.getId(), mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
assertEquals(resp.getErrorMessage(), 200, resp.getStatus());
Bop bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
Set<Project> projects = bop.getProjects();
assertNotNull(projects);
assertEquals(1, projects.size());
Project returnedProject = projects.iterator().next();
assertNotNull(returnedProject);
assertTrue(returnedProject.getName().equalsIgnoreCase(newProject.getName()));
assertTrue(returnedProject.getDescription().equalsIgnoreCase(newProject.getDescription()));
assertTrue(returnedProject.getEndDate().equals(newProject.getEndDate()));
assertTrue(returnedProject.getFundingEntity().equalsIgnoreCase(newProject.getFundingEntity()));
}
public ProjectManagementPage(SectionView parent) {
super(parent, "Projects");
controller.addListener(
new Listener<ProjectEvent>() {
@Override
public void handleEvent(ProjectEvent event) {
if (view != null) {
view.refresh();
}
}
});
}
/**
* Test getting a project
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testGetProject()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq =
newMockRequest("GET", projectOne.getId(), "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
controller.setAuthenticatedUser(admin);
controller.handleProjectGetRequest(projectOne.getId(), mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(resp.getErrorMessage(), 200, resp.getStatus());
Bop bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
assertEquals(1, bop.getProjects().size());
assertEquals(projectOne, bop.getProjects().iterator().next());
}
@Override
public void editItem(Object[] items) {
try {
String projName = (String) items[0];
int projID =
MedSavantClient.ProjectManager.getProjectID(
LoginController.getInstance().getSessionID(), projName);
// Check for existing unpublished changes to this project.
if (ProjectController.getInstance().promptForUnpublished()) {
try {
// Get lock.
if (MedSavantClient.SettingsManager.getDBLock(
LoginController.getInstance().getSessionID())) {
try {
ProjectWizard wiz =
new ProjectWizard(
projID,
projName,
MedSavantClient.PatientManager.getCustomPatientFields(
LoginController.getInstance().getSessionID(), projID),
MedSavantClient.ProjectManager.getProjectDetails(
LoginController.getInstance().getSessionID(), projID));
wiz.setVisible(true);
} finally {
try {
MedSavantClient.SettingsManager.releaseDBLock(
LoginController.getInstance().getSessionID());
} catch (Exception ex1) {
LOG.error("Error releasing database lock.", ex1);
}
}
} else {
DialogUtils.displayMessage(
"Cannot Modify Project",
"The database is currently locked.\nTo unlock, see the Projects page in the Administration section.");
}
} catch (Exception ex) {
ClientMiscUtils.reportError("Error getting database lock: %s", ex);
}
}
} catch (Exception ex) {
ClientMiscUtils.reportError("Error checking for changes: %s", ex);
}
}
/**
* Tests the authentication of different calls. Currently tests adding a project, updating a
* project and getting collections without correct permissions.
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
*/
@Test
public void testAuthentication()
throws InvalidXmlException, BizInternalException, BizPolicyException, IOException {
Project newProject = new Project(projectOne);
newProject.setName("Update");
newProject.setDescription("foo-update");
newProject.setEndDate(new DateTime(2014, 2, 10, 0, 0));
String mimeType = "application/xml";
// Test updating a project without proper permissions
MockHttpServletRequest mockReq = newMockRequest("PUT", projectOne.getId(), "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
ByteArrayOutputStream sink = new ByteArrayOutputStream();
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(pendingUser);
controller.handleUpdateProjectRequest(
projectOne.getId(), mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
assertEquals(403, resp.getStatus());
// Test adding a project without proper permissions
mimeType = "application/xml";
mockReq = newMockRequest("POST", "/project", "test.org", 80);
resp = new MockHttpServletResponse();
sink = new ByteArrayOutputStream();
newProject.setId("http://test.org/project/2");
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(pendingUser);
controller.handleProjectPostRequest(mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
assertEquals(403, resp.getStatus());
// Test getting the collections for a project without proper permissions
mimeType = "application/xml";
mockReq = newMockRequest("GET", projectOne.getId() + "/collections", "test.org", 80);
resp = new MockHttpServletResponse();
when(requestUtil.buildRequestUrl(any(HttpServletRequest.class)))
.thenReturn(projectOne.getId() + "/collections");
controller.setAuthenticatedUser(pendingUser);
controller.handleProjectCollectionsGetRequest(
projectOne.getId(), mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(403, resp.getStatus());
}
/** @author mfiume */
public class ProjectManagementPage extends SubSectionView {
private static final Log LOG = LogFactory.getLog(ProjectManagementPage.class);
private ProjectController controller = ProjectController.getInstance();
private SplitScreenView view;
public ProjectManagementPage(SectionView parent) {
super(parent, "Projects");
controller.addListener(
new Listener<ProjectEvent>() {
@Override
public void handleEvent(ProjectEvent event) {
if (view != null) {
view.refresh();
}
}
});
}
@Override
public JPanel getView() {
if (view == null) {
view =
new SplitScreenView(
new SimpleDetailedListModel<String>("Projects") {
@Override
public String[] getData() throws Exception {
return ProjectController.getInstance().getProjectNames();
}
},
new ProjectsDetailedView(),
new ProjectDetailedListEditor());
}
return view;
}
@Override
public Component[] getSubSectionMenuComponents() {
Component[] result = new Component[0];
// result[0] = getAddPatientsButton();
return result;
}
private class ProjectDetailedListEditor extends DetailedListEditor {
@Override
public boolean doesImplementAdding() {
return true;
}
@Override
public boolean doesImplementDeleting() {
return true;
}
@Override
public boolean doesImplementEditing() {
return true;
}
@Override
public void addItems() {
try {
new ProjectWizard().setVisible(true);
} catch (Exception ex) {
ClientMiscUtils.reportError("Unable to launch project wizard: %s", ex);
}
}
@Override
public void editItem(Object[] items) {
try {
String projName = (String) items[0];
int projID =
MedSavantClient.ProjectManager.getProjectID(
LoginController.getInstance().getSessionID(), projName);
// Check for existing unpublished changes to this project.
if (ProjectController.getInstance().promptForUnpublished()) {
try {
// Get lock.
if (MedSavantClient.SettingsManager.getDBLock(
LoginController.getInstance().getSessionID())) {
try {
ProjectWizard wiz =
new ProjectWizard(
projID,
projName,
MedSavantClient.PatientManager.getCustomPatientFields(
LoginController.getInstance().getSessionID(), projID),
MedSavantClient.ProjectManager.getProjectDetails(
LoginController.getInstance().getSessionID(), projID));
wiz.setVisible(true);
} finally {
try {
MedSavantClient.SettingsManager.releaseDBLock(
LoginController.getInstance().getSessionID());
} catch (Exception ex1) {
LOG.error("Error releasing database lock.", ex1);
}
}
} else {
DialogUtils.displayMessage(
"Cannot Modify Project",
"The database is currently locked.\nTo unlock, see the Projects page in the Administration section.");
}
} catch (Exception ex) {
ClientMiscUtils.reportError("Error getting database lock: %s", ex);
}
}
} catch (Exception ex) {
ClientMiscUtils.reportError("Error checking for changes: %s", ex);
}
}
@Override
public void deleteItems(List<Object[]> items) {
int nameIndex = 0;
int keyIndex = 0;
int result;
if (items.size() == 1) {
String name = (String) items.get(0)[nameIndex];
result =
DialogUtils.askYesNo(
"Confirm",
"<html>Are you sure you want to remove <i>%s</i>?<br>This cannot be undone.</html>",
name);
} else {
result =
DialogUtils.askYesNo(
"Confirm",
"<html>Are you sure you want to remove these %d projects?<br>This cannot be undone.</html>",
items.size());
}
if (result == DialogUtils.YES) {
for (Object[] v : items) {
String projectName = (String) v[keyIndex];
controller.removeProject(projectName);
}
try {
if (controller.getProjectNames().length == 0) {
LoginController.getInstance().logout();
}
DialogUtils.displayMessage("Successfully removed " + items.size() + " project(s)");
} catch (Exception ex) {
ClientMiscUtils.reportError("Unable to get updated project list: %s.", ex);
}
}
}
}
private class ProjectsDetailedView extends DetailedView {
private final JPanel content;
private String projectName;
private DetailsWorker detailsWorker;
private JPanel details;
private CollapsiblePane infoPanel;
public ProjectsDetailedView() {
super(pageName);
JPanel viewContainer = (JPanel) ViewUtil.clear(this.getContentPanel());
viewContainer.setLayout(new BorderLayout());
JPanel infoContainer = ViewUtil.getClearPanel();
ViewUtil.applyVerticalBoxLayout(infoContainer);
viewContainer.add(ViewUtil.getClearBorderlessScrollPane(infoContainer), BorderLayout.CENTER);
CollapsiblePanes panes = new CollapsiblePanes();
panes.setOpaque(false);
infoContainer.add(panes);
infoPanel = new CollapsiblePane();
infoPanel.setStyle(CollapsiblePane.TREE_STYLE);
infoPanel.setCollapsible(false);
panes.add(infoPanel);
panes.addExpansion();
content = new JPanel();
content.setLayout(new BorderLayout());
infoPanel.setLayout(new BorderLayout());
infoPanel.add(content, BorderLayout.CENTER);
details = ViewUtil.getClearPanel();
content.add(details);
}
@Override
public void setSelectedItem(Object[] item) {
projectName = (String) item[0];
refreshSelectedProject();
}
private void refreshSelectedProject() {
infoPanel.setTitle(projectName);
details.removeAll();
details.updateUI();
if (detailsWorker != null) {
detailsWorker.cancel(true);
}
detailsWorker = new DetailsWorker(projectName);
detailsWorker.execute();
}
@Override
public JPopupMenu createPopup() {
return null; // nothing yet
}
private class DetailsWorker extends MedSavantWorker<ProjectDetails[]> {
private String projectName;
Dimension buttonDim = new Dimension(100, 23);
public DetailsWorker(String projectName) {
super(pageName);
this.projectName = projectName;
}
@Override
protected ProjectDetails[] doInBackground() throws Exception {
int projectId = ProjectController.getInstance().getProjectID(projectName);
return MedSavantClient.ProjectManager.getProjectDetails(
LoginController.getInstance().getSessionID(), projectId);
}
@Override
protected void showProgress(double fraction) {
//
}
@Override
protected void showSuccess(ProjectDetails[] result) {
setDetailsList(result);
}
}
private synchronized void setDetailsList(ProjectDetails[] projectDetails) {
details.removeAll();
ViewUtil.setBoxYLayout(details);
String[][] values = new String[projectDetails.length][2];
for (int i = 0; i < projectDetails.length; i++) {
values[i][0] = projectDetails[i].getReferenceName();
values[i][1] = projectDetails[i].getNumAnnotations() + " annotation(s) applied";
}
details.add(ViewUtil.getKeyValuePairList(values));
try {
if (MedSavantClient.SettingsManager.getSetting(
LoginController.getInstance().getSessionID(), "db lock")
.equals("true")) {
JPanel p = new JPanel();
ViewUtil.applyHorizontalBoxLayout(p);
p.add(
ViewUtil.alignLeft(
new JLabel(
"The database is locked. Administrators cannot make further changes.")));
JButton b = new JButton("Unlock");
b.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent ae) {
try {
int result =
DialogUtils.askYesNo(
"Warning",
"Unlocking the database while another administrator is making changes can\n"
+ "cause permanent damage. Only unlock if you are sure no one is in the process of\n"
+ "making changes. Are you sure you want to proceed?");
if (result == DialogUtils.YES) {
MedSavantClient.SettingsManager.releaseDBLock(
LoginController.getInstance().getSessionID());
refreshSelectedProject();
}
} catch (Exception ex) {
}
}
});
p.add(b);
details.add(Box.createVerticalStrut(10));
details.add(p);
} else {
JPanel p = new JPanel();
ViewUtil.applyHorizontalBoxLayout(p);
p.add(
ViewUtil.alignLeft(
new JLabel("The database is unlocked. Administrators can make changes.")));
JButton b = new JButton("Lock");
b.addActionListener(
new ActionListener() {
@Override
public void actionPerformed(ActionEvent ae) {
try {
MedSavantClient.SettingsManager.getDBLock(
LoginController.getInstance().getSessionID());
refreshSelectedProject();
} catch (Exception ex) {
}
}
});
p.add(b);
details.add(Box.createVerticalStrut(10));
details.add(p);
}
} catch (Exception ex) {
}
details.updateUI();
}
@Override
public void setMultipleSelections(List<Object[]> items) {
if (items.isEmpty()) {
infoPanel.setTitle("");
} else {
infoPanel.setTitle("Multiple projects (" + items.size() + ")");
}
details.removeAll();
details.updateUI();
}
}
}
@Override
protected ProjectDetails[] doInBackground() throws Exception {
int projectId = ProjectController.getInstance().getProjectID(projectName);
return MedSavantClient.ProjectManager.getProjectDetails(
LoginController.getInstance().getSessionID(), projectId);
}
/**
* Test getting all the projects for a user
*
* @throws InvalidXmlException
* @throws BizInternalException
* @throws BizPolicyException
* @throws IOException
* @throws ServletException
*/
@Test
public void testGetAllProjects()
throws InvalidXmlException, BizPolicyException, IOException, ServletException {
// Test getting the list of project without logging in
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq = newMockRequest("GET", "/project", "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
controller.handleEmptyGetRequest(mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(401, resp.getStatus());
// Test getting a single project
ProjectBizService bizService = mock(ProjectBizService.class);
HashSet<Project> projects = new HashSet<Project>();
projects.add(projectOne);
when(bizService.findByAdmin(admin)).thenReturn(projects);
controller.setBizService(bizService);
controller.setAuthenticatedUser(admin);
resp = new MockHttpServletResponse();
controller.handleEmptyGetRequest(mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(200, resp.getStatus());
Bop bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
assertEquals(1, bop.getProjects().size());
// Test a query that returns no projects
projects.clear();
when(bizService.findByAdmin(user)).thenReturn(projects);
controller.setAuthenticatedUser(user);
resp = new MockHttpServletResponse();
controller.handleEmptyGetRequest(mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(200, resp.getStatus());
bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
assertEquals(0, bop.getProjects().size());
// Test admin sees all projects in the system
Project newProject = new Project();
newProject.setId(testProjectIdTwo);
newProject.setName("Second_Test_Project");
newProject.setDescription("foo");
List<String> numbers = new ArrayList<String>();
numbers.add("54321");
numbers.add("9876");
newProject.setNumbers(numbers);
newProject.setFundingEntity("moo");
newProject.setStartDate(new DateTime(2012, 5, 4, 0, 0));
newProject.setEndDate(new DateTime(2013, 12, 23, 0, 0));
newProject.addPi(user.getId());
projectService.create(newProject);
controller.setBizService(projectBizService);
controller.setAuthenticatedUser(admin);
resp = new MockHttpServletResponse();
controller.handleEmptyGetRequest(mimeType, null, mockReq, resp);
assertNotNull(resp);
assertEquals(200, resp.getStatus());
bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
assertEquals(projectService.getAll().size(), bop.getProjects().size());
}
/**
* Tests that admin can be added and removed from a project
*
* @throws IOException
* @throws BizPolicyException
* @throws ProjectServiceException
* @throws InvalidXmlException
* @throws BizInternalException
*/
@Test
public void testUpdateProjectAdmin()
throws InvalidXmlException, ProjectServiceException, BizPolicyException, IOException,
BizInternalException {
// Test adding an admin to the project.
Project newProject = new Project(projectOne);
newProject.addPi(user.getId());
final String mimeType = "application/xml";
final MockHttpServletRequest mockReq =
newMockRequest("PUT", projectOne.getId(), "test.org", 80);
MockHttpServletResponse resp = new MockHttpServletResponse();
ByteArrayOutputStream sink = new ByteArrayOutputStream();
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(admin);
controller.handleUpdateProjectRequest(
newProject.getId(), mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
assertEquals(resp.getErrorMessage(), 200, resp.getStatus());
Bop bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
Set<Project> projects = bop.getProjects();
assertNotNull(projects);
assertEquals(1, projects.size());
Project returnedProject = projects.iterator().next();
assertNotNull(returnedProject);
assertEquals(newProject.getPis().size(), returnedProject.getPis().size());
// Test removing an admin from the project.
newProject.removePi(user.getId());
resp = new MockHttpServletResponse();
sink = new ByteArrayOutputStream();
businessObjectBuilder.buildProject(newProject, sink);
controller.setAuthenticatedUser(admin);
controller.handleUpdateProjectRequest(
newProject.getId(), mimeType, sink.toByteArray(), mockReq, resp);
assertNotNull(resp);
bop =
businessObjectBuilder.buildBusinessObjectPackage(
new ByteArrayInputStream(resp.getContentAsByteArray()));
assertNotNull(bop);
projects = bop.getProjects();
assertNotNull(projects);
assertEquals(1, projects.size());
returnedProject = projects.iterator().next();
assertNotNull(returnedProject);
assertEquals(newProject.getPis().size(), returnedProject.getPis().size());
}
