/** Set the properties for the columns in the results tables. */ private void setColumnProperies() { proteinMatchTable.getTableHeader().setReorderingAllowed(false); uniqueHitsTable.getTableHeader().setReorderingAllowed(false); relatedHitsTable.getTableHeader().setReorderingAllowed(false); proteinMatchTable.getColumn(" ").setMinWidth(30); proteinMatchTable.getColumn(" ").setMaxWidth(30); // set the preferred size of the accession column Integer width = peptideShakerGUI.getPreferredAccessionColumnWidth( proteinMatchTable, proteinMatchTable.getColumn("Accession").getModelIndex(), 2); if (width != null) { proteinMatchTable.getColumn("Accession").setMinWidth(width); proteinMatchTable.getColumn("Accession").setMaxWidth(width); } else { proteinMatchTable.getColumn("Accession").setMinWidth(15); proteinMatchTable.getColumn("Accession").setMaxWidth(Integer.MAX_VALUE); } // the validated column uniqueHitsTable.getColumn(" ").setMaxWidth(30); relatedHitsTable.getColumn(" ").setMaxWidth(30); uniqueHitsTable.getColumn(" ").setMinWidth(30); relatedHitsTable.getColumn(" ").setMinWidth(30); proteinMatchTable.getColumn("").setMaxWidth(30); uniqueHitsTable.getColumn("").setMaxWidth(30); relatedHitsTable.getColumn("").setMaxWidth(30); proteinMatchTable.getColumn("").setMinWidth(30); uniqueHitsTable.getColumn("").setMinWidth(30); relatedHitsTable.getColumn("").setMinWidth(30); // the score and confidence columns uniqueHitsTable.getColumn("Confidence").setMaxWidth(90); uniqueHitsTable.getColumn("Confidence").setMinWidth(90); uniqueHitsTable.getColumn("Score").setMaxWidth(90); uniqueHitsTable.getColumn("Score").setMinWidth(90); relatedHitsTable.getColumn("Confidence").setMaxWidth(90); relatedHitsTable.getColumn("Confidence").setMinWidth(90); relatedHitsTable.getColumn("Score").setMaxWidth(90); relatedHitsTable.getColumn("Score").setMinWidth(90); // change the cell renderer to fix a problem in Nimbus and alternating row colors proteinMatchTable.getColumn(" ").setCellRenderer(new NimbusCheckBoxRenderer()); proteinMatchTable .getColumn("Accession") .setCellRenderer( new HtmlLinksRenderer( peptideShakerGUI.getSelectedRowHtmlTagFontColor(), peptideShakerGUI.getNotSelectedRowHtmlTagFontColor())); uniqueHitsTable .getColumn("Protein(s)") .setCellRenderer( new HtmlLinksRenderer( peptideShakerGUI.getSelectedRowHtmlTagFontColor(), peptideShakerGUI.getNotSelectedRowHtmlTagFontColor())); uniqueHitsTable .getColumn(" ") .setCellRenderer( new TrueFalseIconRenderer( new ImageIcon(this.getClass().getResource("/icons/accept.png")), new ImageIcon(this.getClass().getResource("/icons/Error_3.png")), "Validated", "Not Validated")); uniqueHitsTable .getColumn("Score") .setCellRenderer( new JSparklinesBarChartTableCellRenderer( PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor())); uniqueHitsTable .getColumn("Confidence") .setCellRenderer( new JSparklinesBarChartTableCellRenderer( PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor())); ((JSparklinesBarChartTableCellRenderer) uniqueHitsTable.getColumn("Score").getCellRenderer()) .showNumberAndChart(true, peptideShakerGUI.getLabelWidth() + 5); ((JSparklinesBarChartTableCellRenderer) uniqueHitsTable.getColumn("Confidence").getCellRenderer()) .showNumberAndChart(true, peptideShakerGUI.getLabelWidth() + 5); relatedHitsTable .getColumn("Protein(s)") .setCellRenderer( new HtmlLinksRenderer( peptideShakerGUI.getSelectedRowHtmlTagFontColor(), peptideShakerGUI.getNotSelectedRowHtmlTagFontColor())); relatedHitsTable .getColumn(" ") .setCellRenderer( new TrueFalseIconRenderer( new ImageIcon(this.getClass().getResource("/icons/accept.png")), new ImageIcon(this.getClass().getResource("/icons/Error_3.png")), "Validated", "Not Validated")); relatedHitsTable .getColumn("Score") .setCellRenderer( new JSparklinesBarChartTableCellRenderer( PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor())); relatedHitsTable .getColumn("Confidence") .setCellRenderer( new JSparklinesBarChartTableCellRenderer( PlotOrientation.HORIZONTAL, 100.0, peptideShakerGUI.getSparklineColor())); ((JSparklinesBarChartTableCellRenderer) relatedHitsTable.getColumn("Score").getCellRenderer()) .showNumberAndChart(true, peptideShakerGUI.getLabelWidth() + 5); ((JSparklinesBarChartTableCellRenderer) relatedHitsTable.getColumn("Confidence").getCellRenderer()) .showNumberAndChart(true, peptideShakerGUI.getLabelWidth() + 5); // set up the table header tooltips candidateProteinsTableToolTips = new ArrayList<String>(); candidateProteinsTableToolTips.add(null); candidateProteinsTableToolTips.add("Currently Selected Protein Match"); candidateProteinsTableToolTips.add("Protein Accession"); candidateProteinsTableToolTips.add("Protein Description"); uniqueHitsTableToolTips = new ArrayList<String>(); uniqueHitsTableToolTips.add(null); uniqueHitsTableToolTips.add("Protein Accession(s)"); uniqueHitsTableToolTips.add("Protein Score"); uniqueHitsTableToolTips.add("Protein Confidence"); uniqueHitsTableToolTips.add("Validated"); relatedHitsTableToolTips = new ArrayList<String>(); relatedHitsTableToolTips.add(null); relatedHitsTableToolTips.add("Protein Accession(s)"); relatedHitsTableToolTips.add("Protein Score"); relatedHitsTableToolTips.add("Protein Confidence"); relatedHitsTableToolTips.add("Validated"); }