public void analyze(String name, Object data) {
if (!(data instanceof SequenceGroup)) {
ErrorWindow.showErrorWindow(
new Exception("Got a non-sequencegroup object for a dot plot analysis"));
}
SequenceGroup sg = (SequenceGroup) data;
currentSG = sg;
titleLabel.setText(name);
DefaultComboBoxModel cModel1 = new DefaultComboBoxModel();
DefaultComboBoxModel cModel2 = new DefaultComboBoxModel();
for (int j = 0; j < sg.size(); j++) {
cModel1.addElement(sg.get(j).getName());
cModel2.addElement(sg.get(j).getName());
}
seq1Box.setModel(cModel1);
seq2Box.setModel(cModel2);
seq1Box.setSelectedIndex(0);
seq2Box.setSelectedIndex(1);
dotPlot.setBlockWidth((Integer) blockWidthSpinner.getValue());
changeSequences();
}
protected void updateBlockWidth() {
dotPlot.setBlockWidth((Integer) blockWidthSpinner.getValue());
dotPlot.repaint();
}
