/**
* this is what a Mapper does
*
* @param valuein @return iterator over mapped key values
*/
@Override
public Iterable<KeyValueObject<PeakMZKey, ICluster>> mapValues(final ICluster valuein) {
double precursorMZ = valuein.getPrecursorMz();
List<KeyValueObject<PeakMZKey, ICluster>> ret =
new ArrayList<KeyValueObject<PeakMZKey, ICluster>>();
List<ISpectrum> clusteredSpectra = valuein.getClusteredSpectra();
if (!clusteredSpectra.isEmpty() && precursorMZ < MZIntensityUtilities.HIGHEST_USABLE_MZ) {
for (ISpectrum match : clusteredSpectra) {
ICluster cluster = ClusterUtilities.asCluster(match);
for (int peakMz : match.asMajorPeakMZs(Defaults.getMajorPeakCount())) {
PeakMZKey mzKey = new PeakMZKey(peakMz, precursorMZ);
ret.add(new KeyValueObject<PeakMZKey, ICluster>(mzKey, cluster));
}
}
}
return ret;
}
