public void prepareAttributes() throws XPathException {
AttributeCollection atts = getAttributeList();
overrideAtt = "yes";
for (int a = 0; a < atts.getLength(); a++) {
String f = atts.getQName(a);
if (f.equals(StandardNames.NAME)) {
nameAtt = Whitespace.trim(atts.getValue(a));
assert (nameAtt != null);
if (nameAtt.indexOf(':') < 0) {
compileError("Function name must have a namespace prefix", "XTSE0740");
}
try {
setObjectName(makeQName(nameAtt));
} catch (NamespaceException err) {
compileError(err.getMessage(), "XTSE0280");
} catch (XPathException err) {
compileError(err);
}
} else if (f.equals(StandardNames.AS)) {
asAtt = atts.getValue(a);
} else if (f.equals(StandardNames.OVERRIDE)) {
overrideAtt = Whitespace.trim(atts.getValue(a));
if ("yes".equals(overrideAtt)) {
override = true;
} else if ("no".equals(overrideAtt)) {
override = false;
} else {
override = true;
compileError("override must be 'yes' or 'no'", "XTSE0020");
}
} else if (f.equals("memo-function") && atts.getURI(a).equals(NamespaceConstant.SAXON)) {
String memoAtt = Whitespace.trim(atts.getValue(a));
if ("yes".equals(memoAtt)) {
memoFunction = true;
} else if ("no".equals(memoAtt)) {
memoFunction = false;
} else {
compileError("saxon:memo-function must be 'yes' or 'no'", "XTSE0020");
}
} else {
checkUnknownAttribute(atts.getNodeName(a));
}
}
if (nameAtt == null) {
reportAbsence("name");
nameAtt = "xsl:unnamed-function-" + generateId();
}
if (asAtt == null) {
resultType = SequenceType.ANY_SEQUENCE;
} else {
resultType = makeSequenceType(asAtt);
}
functionName = nameAtt;
}
/**
* Create all attribute declarations. This method is called once in the constructor of the super
* class. The <code>H1</code> element may have the following attributes:
*
* <table>
* <tbody>
* <tr>
* <th>NAME</th><th>TYPE</th><th>USAGE</th><th>DEFAULT (INITIAL) VALUE</th><th>MEMO</th>
* </tr>
* <tr>
* <td>%attrs;</td><td>-</td><td>-</td><td>-</td><td>-</td>
* </tr>
* <tr>
* <td>%align;</td><td>-</td><td>-</td><td>-</td><td>-</td>
* </tr>
* </tbody>
* </table>
*
* <p><b>%align;</b> means <code>align (left|center|right|justify) #IMPLIED</code>. Unfortunately,
* this <code>align</code> is different from one in <code>IMG</code> or <code>TABLE</code>. So,
* the attribute declaration of <code>align</code> should be localy created and it shouldn't be
* registered in a <code>HCMDocImpl</code> instance.
*
* <p>However, %align is used in sevaral times. I wouldn't write same code in many times. So, I
* add a new utility method into <code>CMUtil</code> to create the attribute declaration. <br>
*/
protected void createAttributeDeclarations() {
if (attributes != null) return; // already created.
if (attributeCollection == null) return; // fatal
attributes = new CMNamedNodeMapImpl();
// %attrs;
attributeCollection.getAttrs(attributes);
// align
HTMLAttrDeclImpl attr = AttributeCollection.createAlignForParagraph();
if (attr != null) attributes.putNamedItem(CHTMLNamespace.ATTR_NAME_ALIGN, attr);
}
public void reload(DatasetConfigTreeNode editingNode, DatasetConfigTreeNode parentNode) {
int start, finish;
String parentClassName = (parentNode.getUserObject().getClass()).getName();
String childClassName = (editingNode.getUserObject().getClass()).getName();
start = childClassName.lastIndexOf(".") + 1;
finish = childClassName.length();
String childName = childClassName.substring(start, finish);
if (parentClassName.equals("org.ensembl.mart.lib.config.DatasetConfig")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterPage")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addFilterPage((FilterPage) editingNode.getUserObject());
// config.removeAttributePage();
} else if (childClassName.equals("org.ensembl.mart.lib.config.AttributePage")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addAttributePage((AttributePage) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Importable")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addImportable((Importable) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Exportable")) {
config = (DatasetConfig) parentNode.getUserObject();
config.addExportable((Exportable) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterPage")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterGroup")) {
FilterPage fp = (FilterPage) parentNode.getUserObject();
fp.addFilterGroup((FilterGroup) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterGroup")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterCollection")) {
FilterGroup fg = (FilterGroup) parentNode.getUserObject();
fg.addFilterCollection((FilterCollection) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterCollection")) {
if (childClassName.equals("org.ensembl.mart.lib.config.FilterDescription")) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
fc.addFilterDescription((FilterDescription) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.FilterDescription")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
fd.addOption((Option) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.SpecificFilterContent")) {
FilterDescription ad = (FilterDescription) parentNode.getUserObject();
ad.addSpecificFilterContent((SpecificFilterContent) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.Option")) {
if (childClassName.equals("org.ensembl.mart.lib.config.SpecificOptionContent")) {
Option ad = (Option) parentNode.getUserObject();
ad.addSpecificOptionContent((SpecificOptionContent) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.PushAction")) {
Option op = (Option) parentNode.getUserObject();
op.addPushAction((PushAction) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
Option op = (Option) parentNode.getUserObject();
op.addOption((Option) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.PushAction")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
PushAction pa = (PushAction) parentNode.getUserObject();
pa.addOption((Option) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributePage")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeGroup")) {
AttributePage ap = (AttributePage) parentNode.getUserObject();
ap.addAttributeGroup((AttributeGroup) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeGroup")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeCollection")) {
AttributeGroup ag = (AttributeGroup) parentNode.getUserObject();
ag.addAttributeCollection((AttributeCollection) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeCollection")) {
if (childClassName.equals("org.ensembl.mart.lib.config.AttributeDescription")) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.addAttributeDescription((AttributeDescription) editingNode.getUserObject());
} else if (childClassName.equals("org.ensembl.mart.lib.config.AttributeList")) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.addAttributeList((AttributeList) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.AttributeDescription")) {
if (childClassName.equals("org.ensembl.mart.lib.config.SpecificAttributeContent")) {
AttributeDescription ad = (AttributeDescription) parentNode.getUserObject();
ad.addSpecificAttributeContent((SpecificAttributeContent) editingNode.getUserObject());
}
} else if (parentClassName.equals("org.ensembl.mart.lib.config.SpecificFilterContent")) {
if (childClassName.equals("org.ensembl.mart.lib.config.Option")) {
SpecificFilterContent fd = (SpecificFilterContent) parentNode.getUserObject();
System.out.println(
"TREE MODEL -- ADDING DYN OPTION "
+ ((Option) editingNode.getUserObject()).getInternalName());
fd.addOption((Option) editingNode.getUserObject());
}
}
super.reload(parentNode);
}
public void removeNodeFromParent(DatasetConfigTreeNode node) {
Object child = node.getUserObject();
if (node.getParent() == null) return; // Can't remove root node.
Object parent = ((DatasetConfigTreeNode) node.getParent()).getUserObject();
if (parent instanceof org.ensembl.mart.lib.config.DatasetConfig) {
if (child instanceof org.ensembl.mart.lib.config.FilterPage) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeFilterPage((FilterPage) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributePage) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeAttributePage((AttributePage) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Exportable) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeExportable((Exportable) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Importable) {
config = (DatasetConfig) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
config.removeImportable((Importable) node.getUserObject());
}
} else if (node.getUserObject() instanceof DynamicDataset) {
config =
(DatasetConfig) ((DatasetConfigTreeNode) node.getParent().getParent()).getUserObject();
config.removeDynamicDataset((DynamicDataset) node.getUserObject());
} else if (parent instanceof org.ensembl.mart.lib.config.FilterPage) {
if (child instanceof org.ensembl.mart.lib.config.FilterGroup) {
FilterPage fp = (FilterPage) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fp.removeFilterGroup((FilterGroup) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterGroup) {
if (child instanceof org.ensembl.mart.lib.config.FilterCollection) {
FilterGroup fg = (FilterGroup) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fg.removeFilterCollection((FilterCollection) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterCollection) {
if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterCollection fc =
(FilterCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fc.removeFilterDescription((FilterDescription) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterDescription) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterDescription fd =
(FilterDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fd.removeOption((Option) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
FilterDescription ad =
(FilterDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificFilterContent((SpecificFilterContent) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.Option) {
if (child instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
Option ad = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificOptionContent((SpecificOptionContent) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
Option op = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
op.removePushAction((PushAction) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
Option fd = (Option) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
fd.removeOption((Option) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.PushAction) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
PushAction pa = (PushAction) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
pa.removeOption((Option) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributePage) {
if (child instanceof org.ensembl.mart.lib.config.AttributeGroup) {
AttributePage ap =
(AttributePage) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ap.removeAttributeGroup((AttributeGroup) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeGroup) {
if (child instanceof org.ensembl.mart.lib.config.AttributeCollection) {
AttributeGroup ag =
(AttributeGroup) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ag.removeAttributeCollection((AttributeCollection) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeCollection) {
if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
AttributeCollection ac =
(AttributeCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ac.removeAttributeDescription((AttributeDescription) node.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributeList) {
AttributeCollection ac =
(AttributeCollection) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ac.removeAttributeList((AttributeList) node.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
AttributeDescription ad =
(AttributeDescription) ((DatasetConfigTreeNode) node.getParent()).getUserObject();
ad.removeSpecificAttributeContent((SpecificAttributeContent) node.getUserObject());
}
}
super.removeNodeFromParent(node);
}
public String insertNodeInto(
DatasetConfigTreeNode editingNode, DatasetConfigTreeNode parentNode, int index) {
int start, finish;
Object child = editingNode.getUserObject();
Object parent = parentNode.getUserObject();
BaseNamedConfigurationObject parentObj = (BaseNamedConfigurationObject) parent;
BaseNamedConfigurationObject childObj = (BaseNamedConfigurationObject) child;
if (parentObj.getHidden() != null && parentObj.getHidden().equals("true")) {
childObj.setHidden("true");
Enumeration children = editingNode.breadthFirstEnumeration();
DatasetConfigTreeNode childNode = null;
while (children.hasMoreElements()) {
childNode = (DatasetConfigTreeNode) children.nextElement();
BaseNamedConfigurationObject ch = (BaseNamedConfigurationObject) childNode.getUserObject();
ch.setHidden("true");
}
}
String childClassName = (editingNode.getUserObject().getClass()).getName();
start = childClassName.lastIndexOf(".") + 1;
finish = childClassName.length();
String childName = childClassName.substring(start, finish);
// index is a Node index. objectIndex may be different
int objIndex = index - DatasetConfigTreeNode.getHeterogenousOffset(parent, child);
if (parent instanceof org.ensembl.mart.lib.config.DatasetConfig) {
if (child instanceof org.ensembl.mart.lib.config.FilterPage) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertFilterPage(objIndex, (FilterPage) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributePage) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertAttributePage(objIndex, (AttributePage) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Importable) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertImportable(objIndex, (Importable) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Exportable) {
config = (DatasetConfig) parentNode.getUserObject();
config.insertExportable(objIndex, (Exportable) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a DatasetConfig.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterPage) {
if (child instanceof org.ensembl.mart.lib.config.FilterGroup) {
FilterPage fp = (FilterPage) parentNode.getUserObject();
fp.insertFilterGroup(objIndex, (FilterGroup) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterPage.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterGroup) {
if (child instanceof org.ensembl.mart.lib.config.FilterCollection) {
FilterGroup fg = (FilterGroup) parentNode.getUserObject();
fg.insertFilterCollection(objIndex, (FilterCollection) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterGroup.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterCollection) {
if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
fc.insertFilterDescription(objIndex, (FilterDescription) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
FilterDescription fdConvert = new FilterDescription((Option) editingNode.getUserObject());
fc.insertFilterDescription(objIndex, fdConvert);
editingNode.setUserObject(fdConvert);
} else if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
FilterCollection fc = (FilterCollection) parentNode.getUserObject();
// FilterDescription fdConvert = new FilterDescription((AttributeDescription)
// editingNode.getUserObject());
AttributeDescription ad = (AttributeDescription) editingNode.getUserObject();
FilterDescription fdConvert = null;
try {
fdConvert =
new FilterDescription(
ad.getInternalName(),
ad.getField(),
"text",
"=",
"=",
ad.getDisplayName(),
ad.getTableConstraint(),
ad.getKey(),
ad.getDescription(),
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"",
"");
} catch (ConfigurationException e) {
// guaranteed internal name for atts
}
fc.insertFilterDescription(objIndex, fdConvert);
editingNode.setUserObject(fdConvert);
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterCollection.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.FilterDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
FilterDescription ad = (FilterDescription) parentNode.getUserObject();
ad.insertSpecificFilterContent(
objIndex, (SpecificFilterContent) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.FilterDescription) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
Option opConvert = new Option((FilterDescription) editingNode.getUserObject());
fd.insertOption(objIndex, opConvert);
editingNode.setUserObject(opConvert);
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
fd.insertOption(objIndex, (Option) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
FilterDescription fd = (FilterDescription) parentNode.getUserObject();
// fd.insertPushAction(objIndex, (PushAction) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterDescription.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.Option) {
if (child instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
Option ad = (Option) parentNode.getUserObject();
ad.insertSpecificOptionContent(
objIndex, (SpecificOptionContent) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.PushAction) {
Option op = (Option) parentNode.getUserObject();
op.insertPushAction(objIndex, (PushAction) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.Option) {
Option op = (Option) parentNode.getUserObject();
op.insertOption(objIndex, (Option) editingNode.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.PushAction) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
PushAction pa = (PushAction) parentNode.getUserObject();
pa.insertOption(objIndex, (Option) editingNode.getUserObject());
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributePage) {
if (child instanceof org.ensembl.mart.lib.config.AttributeGroup) {
AttributePage ap = (AttributePage) parentNode.getUserObject();
ap.insertAttributeGroup(objIndex, (AttributeGroup) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in an AttributePage.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeGroup) {
if (child instanceof org.ensembl.mart.lib.config.AttributeCollection) {
AttributeGroup ag = (AttributeGroup) parentNode.getUserObject();
ag.insertAttributeCollection(objIndex, (AttributeCollection) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in an AttributeGroup.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeCollection) {
if (child instanceof org.ensembl.mart.lib.config.AttributeDescription) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.insertAttributeDescription(objIndex, (AttributeDescription) editingNode.getUserObject());
} else if (child instanceof org.ensembl.mart.lib.config.AttributeList) {
AttributeCollection ac = (AttributeCollection) parentNode.getUserObject();
ac.insertAttributeList(objIndex, (AttributeList) editingNode.getUserObject());
} else {
String error_string =
"Error: " + childName + " cannot be inserted in an AttributeCollection.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.AttributeDescription) {
if (child instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
AttributeDescription ad = (AttributeDescription) parentNode.getUserObject();
ad.insertSpecificAttributeContent(
objIndex, (SpecificAttributeContent) editingNode.getUserObject());
} else {
String error_string = "Error: " + childName + " cannot be inserted in a FilterDescription.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificFilterContent) {
if (child instanceof org.ensembl.mart.lib.config.Option) {
SpecificFilterContent fd = (SpecificFilterContent) parentNode.getUserObject();
System.out.println(
"TREE MODEL 2 -- ADDING DYN OPTION "
+ ((Option) editingNode.getUserObject()).getInternalName());
fd.insertOption(objIndex, (Option) editingNode.getUserObject());
} else {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicFilterContent.";
return error_string;
}
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificAttributeContent) {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicAttributeContent.";
return error_string;
} else if (parent instanceof org.ensembl.mart.lib.config.SpecificOptionContent) {
String error_string =
"Error: " + childName + " cannot be inserted in an DynamicOptionContent.";
return error_string;
}
super.insertNodeInto(editingNode, parentNode, index);
return "success";
}
public void prepareAttributes() throws XPathException {
AttributeCollection atts = getAttributeList();
String nameAtt = null;
String namespaceAtt = null;
String selectAtt = null;
String separatorAtt = null;
String validationAtt = null;
String typeAtt = null;
for (int a = 0; a < atts.getLength(); a++) {
int nc = atts.getNameCode(a);
String f = getNamePool().getClarkName(nc);
if (f == StandardNames.NAME) {
nameAtt = Whitespace.trim(atts.getValue(a));
} else if (f == StandardNames.NAMESPACE) {
namespaceAtt = Whitespace.trim(atts.getValue(a));
} else if (f == StandardNames.SELECT) {
selectAtt = atts.getValue(a);
} else if (f == StandardNames.SEPARATOR) {
separatorAtt = atts.getValue(a);
} else if (f == StandardNames.VALIDATION) {
validationAtt = Whitespace.trim(atts.getValue(a));
} else if (f == StandardNames.TYPE) {
typeAtt = Whitespace.trim(atts.getValue(a));
} else {
checkUnknownAttribute(nc);
}
}
if (nameAtt == null) {
reportAbsence("name");
return;
}
attributeName = makeAttributeValueTemplate(nameAtt);
if (attributeName instanceof StringLiteral) {
if (!getConfiguration()
.getNameChecker()
.isQName(((StringLiteral) attributeName).getStringValue())) {
invalidAttributeName("Attribute name " + Err.wrap(nameAtt) + " is not a valid QName");
}
if (nameAtt.equals("xmlns")) {
if (namespace == null) {
invalidAttributeName("Invalid attribute name: xmlns");
}
}
if (nameAtt.startsWith("xmlns:")) {
if (namespaceAtt == null) {
invalidAttributeName("Invalid attribute name: " + Err.wrap(nameAtt));
} else {
// ignore the prefix "xmlns"
nameAtt = nameAtt.substring(6);
attributeName = new StringLiteral(nameAtt);
}
}
}
if (namespaceAtt != null) {
namespace = makeAttributeValueTemplate(namespaceAtt);
if (namespace instanceof StringLiteral) {
if (!AnyURIValue.isValidURI(((StringLiteral) namespace).getStringValue())) {
compileError("The value of the namespace attribute must be a valid URI", "XTDE0865");
}
}
}
if (selectAtt != null) {
select = makeExpression(selectAtt);
}
if (separatorAtt == null) {
if (selectAtt == null) {
separator = new StringLiteral(StringValue.EMPTY_STRING);
} else {
separator = new StringLiteral(StringValue.SINGLE_SPACE);
}
} else {
separator = makeAttributeValueTemplate(separatorAtt);
}
if (validationAtt != null) {
validationAction = Validation.getCode(validationAtt);
if (validationAction != Validation.STRIP && !getExecutable().isSchemaAware()) {
validationAction = Validation.STRIP;
compileError("To perform validation, a schema-aware XSLT processor is needed", "XTSE1660");
}
if (validationAction == Validation.INVALID) {
compileError("Invalid value of validation attribute", "XTSE0020");
validationAction = getContainingStylesheet().getDefaultValidation();
}
} else {
validationAction = getContainingStylesheet().getDefaultValidation();
}
if (typeAtt != null) {
if (!getExecutable().isSchemaAware()) {
compileError(
"The @type attribute is available only with a schema-aware XSLT processor", "XTSE1660");
} else {
SchemaType type = getSchemaType(typeAtt);
if (type == null) {
compileError("Unknown attribute type " + typeAtt, "XTSE1520");
} else {
if (type.isSimpleType()) {
schemaType = (SimpleType) type;
} else {
compileError("Type annotation for attributes must be a simple type", "XTSE1530");
type = null;
}
}
validationAction = Validation.BY_TYPE;
}
}
if (typeAtt != null && validationAtt != null) {
compileError("The validation and type attributes are mutually exclusive", "XTSE1505");
validationAction = getContainingStylesheet().getDefaultValidation();
schemaType = null;
}
}
public void prepareAttributes() throws XPathException {
AttributeCollection atts = getAttributeList();
for (int a = 0; a < atts.getLength(); a++) {
int nc = atts.getNameCode(a);
String f = getNamePool().getClarkName(nc);
if (f.equals(StandardNames.MODE)) {
modeAtt = Whitespace.trim(atts.getValue(a));
} else if (f.equals(StandardNames.NAME)) {
nameAtt = Whitespace.trim(atts.getValue(a));
} else if (f.equals(StandardNames.MATCH)) {
matchAtt = atts.getValue(a);
} else if (f.equals(StandardNames.PRIORITY)) {
priorityAtt = Whitespace.trim(atts.getValue(a));
} else if (f.equals(StandardNames.AS)) {
asAtt = atts.getValue(a);
} else {
checkUnknownAttribute(nc);
}
}
try {
if (modeAtt == null) {
modeNames = new StructuredQName[1];
modeNames[0] = Mode.DEFAULT_MODE_NAME;
} else {
if (matchAtt == null) {
compileError(
"The mode attribute must be absent if the match attribute is absent", "XTSE0500");
}
// mode is a space-separated list of mode names, or "#default", or "#all"
int count = 0;
boolean allModes = false;
StringTokenizer st = new StringTokenizer(modeAtt, " \t\n\r", false);
while (st.hasMoreTokens()) {
st.nextToken();
count++;
}
if (count == 0) {
compileError("The mode attribute must not be empty", "XTSE0550");
}
modeNames = new StructuredQName[count];
count = 0;
st = new StringTokenizer(modeAtt, " \t\n\r", false);
while (st.hasMoreTokens()) {
String s = st.nextToken();
StructuredQName mname;
if ("#default".equals(s)) {
mname = Mode.DEFAULT_MODE_NAME;
} else if ("#all".equals(s)) {
allModes = true;
mname = Mode.ALL_MODES;
} else {
mname = makeQName(s);
}
for (int e = 0; e < count; e++) {
if (modeNames[e].equals(mname)) {
compileError("In the list of modes, the value " + s + " is duplicated", "XTSE0550");
}
}
modeNames[count++] = mname;
}
if (allModes && (count > 1)) {
compileError("mode='#all' cannot be combined with other modes", "XTSE0550");
}
}
} catch (NamespaceException err) {
compileError(err.getMessage(), "XTSE0280");
} catch (XPathException err) {
if (err.getErrorCodeLocalPart() == null) {
err.setErrorCode("XTSE0280");
} else if (err.getErrorCodeLocalPart().equals("XTSE0020")) {
err.setErrorCode("XTSE0550");
}
err.setIsStaticError(true);
compileError(err);
}
try {
if (nameAtt != null) {
StructuredQName qName = makeQName(nameAtt);
setObjectName(qName);
diagnosticId = nameAtt;
}
} catch (NamespaceException err) {
compileError(err.getMessage(), "XTSE0280");
} catch (XPathException err) {
if (err.getErrorCodeLocalPart() == null) {
err.setErrorCode("XTSE0280");
}
err.setIsStaticError(true);
compileError(err);
}
prioritySpecified = (priorityAtt != null);
if (prioritySpecified) {
if (matchAtt == null) {
compileError(
"The priority attribute must be absent if the match attribute is absent", "XTSE0500");
}
try {
// it's got to be a valid decimal, but we want it as a double, so parse it twice
if (!DecimalValue.castableAsDecimal(priorityAtt)) {
compileError("Invalid numeric value for priority (" + priority + ')', "XTSE0530");
}
priority = Double.parseDouble(priorityAtt);
} catch (NumberFormatException err) {
// shouldn't happen
compileError("Invalid numeric value for priority (" + priority + ')', "XTSE0530");
}
}
if (matchAtt != null) {
match = makePattern(matchAtt);
if (diagnosticId == null) {
diagnosticId = "match=\"" + matchAtt + '\"';
if (modeAtt != null) {
diagnosticId += " mode=\"" + modeAtt + '\"';
}
}
}
if (match == null && nameAtt == null)
compileError("xsl:template must have a name or match attribute (or both)", "XTSE0500");
if (asAtt != null) {
requiredType = makeSequenceType(asAtt);
}
}