Ejemplo n.º 1
0
 public static ValueArray loadAndParseKey(Key okey, String path) {
   FileIntegrityChecker c = FileIntegrityChecker.check(new File(path),false);
   Key k = c.syncDirectory(null,null,null,null);
   ParseDataset.forkParseDataset(okey, new Key[] { k }, null).get();
   UKV.remove(k);
   ValueArray res = DKV.get(okey).get();
   return res;
 }
Ejemplo n.º 2
0
 protected Frame parse_test_file(Key outputKey, String fname, boolean guessSetup) {
   File f = find_test_file(fname);
   assert f != null && f.exists() : " file not found: " + fname;
   NFSFileVec nfs = NFSFileVec.make(f);
   return ParseDataset.parse(
       outputKey,
       new Key[] {nfs._key},
       true,
       ParseSetup.guessSetup(new Key[] {nfs._key}, false, 1));
 }
Ejemplo n.º 3
0
 /**
  * Find & parse a folder of CSV files. NPE if file not found.
  *
  * @param fname Test filename
  * @return Frame or NPE
  */
 protected Frame parse_test_folder(String fname) {
   File folder = find_test_file(fname);
   assert folder.isDirectory();
   File[] files = folder.listFiles();
   Arrays.sort(files);
   ArrayList<Key> keys = new ArrayList<Key>();
   for (File f : files) if (f.isFile()) keys.add(NFSFileVec.make(f)._key);
   Key[] res = new Key[keys.size()];
   keys.toArray(res);
   return ParseDataset.parse(Key.make(), res);
 }
Ejemplo n.º 4
0
  @Test
  public void testChicago() {
    Frame weather = null, crimes = null, census = null;
    String oldtz = Exec.exec("(getTimeZone)").getStr();
    try {
      weather = parse_test_file(Key.make("weather.hex"), "smalldata/chicago/chicagoAllWeather.csv");
      crimes =
          parse_test_file(Key.make("crimes.hex"), "smalldata/chicago/chicagoCrimes10k.csv.zip");
      String fname = "smalldata/chicago/chicagoCensus.csv";
      File f = find_test_file(fname);
      assert f != null && f.exists() : " file not found: " + fname;
      NFSFileVec nfs = NFSFileVec.make(f);
      ParseSetup ps = ParseSetup.guessSetup(new Key[] {nfs._key}, false, 1);
      ps.getColumnTypes()[1] = Vec.T_ENUM;
      census = ParseDataset.parse(Key.make("census.hex"), new Key[] {nfs._key}, true, ps);

      census =
          exec_str(
              "(colnames= census.hex [0 1 2 3 4 5 6 7 8] [\"Community.Area.Number\" \"COMMUNITY.AREA.NAME\" \"PERCENT.OF.HOUSING.CROWDED\" \"PERCENT.HOUSEHOLDS.BELOW.POVERTY\" \"PERCENT.AGED.16..UNEMPLOYED\" \"PERCENT.AGED.25..WITHOUT.HIGH.SCHOOL.DIPLOMA\" \"PERCENT.AGED.UNDER.18.OR.OVER.64\" \"PER.CAPITA.INCOME.\" \"HARDSHIP.INDEX\"])",
              "census.hex");

      crimes =
          exec_str(
              "(colnames= crimes.hex [0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21] [\"ID\" \"Case.Number\" \"Date\" \"Block\" \"IUCR\" \"Primary.Type\" \"Description\" \"Location.Description\" \"Arrest\" \"Domestic\" \"Beat\" \"District\" \"Ward\" \"Community.Area\" \"FBI.Code\" \"X.Coordinate\" \"Y.Coordinate\" \"Year\" \"Updated.On\" \"Latitude\" \"Longitude\" \"Location\"])",
              "crimes.hex");

      exec_str("(setTimeZone \"Etc/UTC\")", null);

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= unary_op_6 (day (tmp= nary_op_5 (as.Date (cols crimes.hex [2]) \"%m/%d/%Y %I:%M:%S %p\")))) [22] [0:9999]) 22 \"Day\")",
              "crimes.hex");

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= binary_op_31 (+ (tmp= unary_op_7 (month nary_op_5)) #1)) [23] [0:9999]) 23 \"Month\")",
              "crimes.hex");

      Keyed.remove(Key.make("nary_op_30"));

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= binary_op_32 (+ (tmp= binary_op_9 (- (tmp= unary_op_8 (year nary_op_5)) #1900)) #1900)) [17] [0:9999]) 17 \"Year\")",
              "crimes.hex");

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= unary_op_10 (week nary_op_5)) [24] [0:9999]) 24 \"WeekNum\")",
              "crimes.hex");

      Keyed.remove(Key.make("binary_op_32"));
      Keyed.remove(Key.make("binary_op_31"));
      Keyed.remove(Key.make("unary_op_8"));
      checkSaneFrame();

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= unary_op_11 (dayOfWeek nary_op_5)) [25] [0:9999]) 25 \"WeekDay\")",
              "crimes.hex");
      Keyed.remove(
          Key.make(
              "nfs:\\C:\\Users\\cliffc\\Desktop\\h2o-3\\smalldata\\chicago\\chicagoCrimes10k.csv.zip"));

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= unary_op_12 (hour nary_op_5)) [26] [0:9999]) 26 \"HourOfDay\")",
              "crimes.hex");

      crimes =
          exec_str(
              "(colnames= (= crimes.hex (tmp= nary_op_16 (ifelse (tmp= binary_op_15 (| (tmp= binary_op_13 (== unary_op_11 \"Sun\")) (tmp= binary_op_14 (== unary_op_11 \"Sat\")))) 1 0)) [27] [0:9999]) 27 \"Weekend\")",
              "crimes.hex");

      // Season is incorrectly assigned in the original chicago demo; picks up the Weekend flag
      crimes =
          exec_str(
              "(colnames= (= crimes.hex nary_op_16 [28] [0:9999]) 28 \"Season\")", "crimes.hex");

      // Standard "head of 10 rows" pattern for printing
      Frame subset_33 = exec_str("(rows crimes.hex [0:10])", "subset_33");
      Keyed.remove(Key.make("subset_33"));

      Keyed.remove(Key.make("subset_33"));
      Keyed.remove(Key.make("unary_op_29"));
      Keyed.remove(Key.make("nary_op_28"));
      Keyed.remove(Key.make("nary_op_27"));
      Keyed.remove(Key.make("nary_op_26"));
      Keyed.remove(Key.make("binary_op_25"));
      Keyed.remove(Key.make("binary_op_24"));
      Keyed.remove(Key.make("binary_op_23"));
      Keyed.remove(Key.make("binary_op_22"));
      Keyed.remove(Key.make("binary_op_21"));
      Keyed.remove(Key.make("binary_op_20"));
      Keyed.remove(Key.make("binary_op_19"));
      Keyed.remove(Key.make("binary_op_18"));
      Keyed.remove(Key.make("binary_op_17"));
      Keyed.remove(Key.make("nary_op_16"));
      Keyed.remove(Key.make("binary_op_15"));
      Keyed.remove(Key.make("binary_op_14"));
      Keyed.remove(Key.make("binary_op_13"));
      Keyed.remove(Key.make("unary_op_12"));
      Keyed.remove(Key.make("unary_op_11"));
      Keyed.remove(Key.make("unary_op_10"));
      Keyed.remove(Key.make("binary_op_9"));
      Keyed.remove(Key.make("unary_op_8"));
      Keyed.remove(Key.make("unary_op_7"));
      Keyed.remove(Key.make("unary_op_6"));
      Keyed.remove(Key.make("nary_op_5"));
      checkSaneFrame();

      // Standard "head of 10 rows" pattern for printing
      Frame subset_34 = exec_str("(rows crimes.hex [0:10])", "subset_34");
      Keyed.remove(Key.make("subset_34"));

      census =
          exec_str(
              "(colnames= census.hex [0 1 2 3 4 5 6 7 8] [\"Community.Area\" \"COMMUNITY.AREA.NAME\" \"PERCENT.OF.HOUSING.CROWDED\" \"PERCENT.HOUSEHOLDS.BELOW.POVERTY\" \"PERCENT.AGED.16..UNEMPLOYED\" \"PERCENT.AGED.25..WITHOUT.HIGH.SCHOOL.DIPLOMA\" \"PERCENT.AGED.UNDER.18.OR.OVER.64\" \"PER.CAPITA.INCOME.\" \"HARDSHIP.INDEX\"])",
              "census.hex");
      Keyed.remove(Key.make("subset_34"));

      Frame subset_35 = exec_str("(cols  crimes.hex [-3])", "subset_35");
      Frame subset_36 = exec_str("(cols weather.hex [-1])", "subset_36");

      subset_36 =
          exec_str(
              "(colnames= subset_36 [0 1 2 3 4 5] [\"Month\" \"Day\" \"Year\" \"maxTemp\" \"meanTemp\" \"minTemp\"])",
              "subset_36");

      crimes.remove();
      weather.remove();

      // nary_op_37 = merge( X Y ); Vecs in X & nary_op_37 shared
      Frame nary_op_37 = exec_str("(merge subset_35 census.hex FALSE FALSE)", "nary_op_37");

      // nary_op_38 = merge( nary_op_37 subset_36); Vecs in nary_op_38 and nary_pop_37 and X shared
      Frame subset_41 =
          exec_str(
              "(rows (tmp= nary_op_38 (merge nary_op_37 subset_36 TRUE FALSE)) (tmp= binary_op_40 (<= (tmp= nary_op_39 (h2o.runif nary_op_38 30792152736.5179)) #0.8)))",
              "subset_41");

      // Standard "head of 10 rows" pattern for printing
      Frame subset_44 = exec_str("(rows subset_41 [0:10])", "subset_44");
      Keyed.remove(Key.make("subset_44"));
      Keyed.remove(Key.make("subset_44"));
      Keyed.remove(Key.make("binary_op_40"));
      Keyed.remove(Key.make("nary_op_37"));

      Frame subset_43 =
          exec_str("(rows nary_op_38 (tmp= binary_op_42 (> nary_op_39 #0.8)))", "subset_43");

      // Chicago demo continues on past, but this is all I've captured for now

      checkSaneFrame();

    } finally {
      Exec.exec(
          "(setTimeZone \""
              + oldtz
              + "\")"); // Restore time zone (which is global, and will affect following tests)
      if (weather != null) weather.remove();
      if (crimes != null) crimes.remove();
      if (census != null) census.remove();

      for (String s :
          new String[] {
            "nary_op_5",
            "unary_op_6",
            "unary_op_7",
            "unary_op_8",
            "binary_op_9",
            "unary_op_10",
            "unary_op_11",
            "unary_op_12",
            "binary_op_13",
            "binary_op_14",
            "binary_op_15",
            "nary_op_16",
            "binary_op_17",
            "binary_op_18",
            "binary_op_19",
            "binary_op_20",
            "binary_op_21",
            "binary_op_22",
            "binary_op_23",
            "binary_op_24",
            "binary_op_25",
            "nary_op_26",
            "nary_op_27",
            "nary_op_28",
            "unary_op_29",
            "binary_op_30",
            "binary_op_31",
            "binary_op_32",
            "subset_33",
            "subset_34",
            "subset_35",
            "subset_36",
            "nary_op_37",
            "nary_op_38",
            "nary_op_39",
            "binary_op_40",
            "subset_41",
            "binary_op_42",
            "subset_43",
            "subset_44",
          }) Keyed.remove(Key.make(s));
    }
  }
Ejemplo n.º 5
0
 public static Frame parse_test_file(Key outputKey, String fname) {
   File f = find_test_file_static(fname);
   assert f != null && f.exists() : " file not found: " + fname;
   NFSFileVec nfs = NFSFileVec.make(f);
   return ParseDataset.parse(outputKey, nfs._key);
 }
Ejemplo n.º 6
0
  @Test
  @Ignore
  public void run() {
    Scope.enter();
    try {
      File file = find_test_file("bigdata/laptop/mnist/train.csv.gz");
      File valid = find_test_file("bigdata/laptop/mnist/test.csv.gz");
      if (file != null) {
        NFSFileVec trainfv = NFSFileVec.make(file);
        Frame frame = ParseDataset.parse(Key.make(), trainfv._key);
        NFSFileVec validfv = NFSFileVec.make(valid);
        Frame vframe = ParseDataset.parse(Key.make(), validfv._key);
        DeepLearningParameters p = new DeepLearningParameters();

        // populate model parameters
        p._model_id = Key.make("dl_mnist_model");
        p._train = frame._key;
        //        p._valid = vframe._key;
        p._response_column = "C785"; // last column is the response
        p._activation = DeepLearningParameters.Activation.RectifierWithDropout;
        //        p._activation = DeepLearningParameters.Activation.MaxoutWithDropout;
        p._hidden = new int[] {800, 800};
        p._input_dropout_ratio = 0.2;
        p._mini_batch_size = 1;
        p._train_samples_per_iteration = 50000;
        p._score_duty_cycle = 0;
        //        p._shuffle_training_data = true;
        //        p._l1= 1e-5;
        //        p._max_w2= 10;
        p._epochs = 10 * 5. / 6;

        // Convert response 'C785' to categorical (digits 1 to 10)
        int ci = frame.find("C785");
        Scope.track(frame.replace(ci, frame.vecs()[ci].toEnum())._key);
        Scope.track(vframe.replace(ci, vframe.vecs()[ci].toEnum())._key);
        DKV.put(frame);
        DKV.put(vframe);

        // speed up training
        p._adaptive_rate =
            true; // disable adaptive per-weight learning rate -> default settings for learning rate
                  // and momentum are probably not ideal (slow convergence)
        p._replicate_training_data =
            true; // avoid extra communication cost upfront, got enough data on each node for load
                  // balancing
        p._overwrite_with_best_model = true; // no need to keep the best model around
        p._classification_stop = -1;
        p._score_interval = 60; // score and print progress report (only) every 20 seconds
        p._score_training_samples =
            10000; // only score on a small sample of the training set -> don't want to spend too
                   // much time scoring (note: there will be at least 1 row per chunk)

        DeepLearning dl = new DeepLearning(p);
        DeepLearningModel model = null;
        try {
          model = dl.trainModel().get();
        } catch (Throwable t) {
          t.printStackTrace();
          throw new RuntimeException(t);
        } finally {
          dl.remove();
          if (model != null) {
            model.delete();
          }
        }
      } else {
        Log.info("Please run ./gradlew syncBigDataLaptop in the top-level directory of h2o-3.");
      }
    } catch (Throwable t) {
      t.printStackTrace();
      throw new RuntimeException(t);
    } finally {
      Scope.exit();
    }
  }