private synchronized void GenerateIsoMorphismMapping() throws Exception {
winner.searchWinners(educts, products, mh);
if (winner.getFlag()) {
// System.out.println("**********Updated Mapping**************");
UpdateMapping();
// System.out.println("**********Updated Matrix**************");
UpdateMatrix(mh, removeHydrogen);
// System.out.println("**********Generate Mapping**************");
GenerateMapping(false);
}
}
private synchronized void GenerateMapping(boolean flag) throws Exception {
boolean ruleMatchingFlag = flag;
if (DEBUG) {
// System.out.println("**********Orignal Matrix**************");
printMatrixAtomContainer(mh, eductList, productList);
printSimMatrix(mh, eductList, productList);
printCliqueMatrix(mh, eductList, productList);
// printStereoMatrix(mh, eductList, productList);
// printFragmentMatrix(mh, eductList, productList);
// printEnergyMatrix(mh, eductList, productList);
}
boolean conditionmet = false;
if (!ruleMatchingFlag) {
RuleBasedMappingHandler ruleBasedMappingHandler =
new RuleBasedMappingHandler(mh, eductList, productList);
if (ruleBasedMappingHandler.isMatchFound()) {
if (DEBUG) {
out.println("Rule Based Mapping Handler Match Found");
}
mh = Selector.modifyMatrix(ruleBasedMappingHandler.getMatrixHolder());
conditionmet = true;
}
ruleMatchingFlag = true;
}
if (!conditionmet) {
if (DEBUG) {
out.println("Subgraph/Exact Match Test");
}
IsomorphismMin omorphismMin = new IsomorphismMin(mh, eductList, productList);
if (omorphismMin.isSubAndCompleteMatchFlag()) {
if (DEBUG) {
out.println("Subgraph/Exact Match");
}
mh = omorphismMin.getUpdatedHolder();
}
}
if (DEBUG) {
out.println("**********Modified Matrix**************");
// printMatrixAtomContainer(mh, eductList, productList);
printSimMatrix(mh, eductList, productList);
printCliqueMatrix(mh, eductList, productList);
// printStereoMatrix(mh, eductList, productList);
// printFragmentMatrix(mh, eductList, productList);
// printEnergyMatrix(mh, eductList, productList);
}
winner.searchWinners(educts, products, mh);
if (DEBUG) {
printFlagMatrix(winner, eductList, productList);
}
if (winner.getFlag()) {
if (DEBUG) {
out.println("**********Updated Mapping**************");
}
UpdateMapping();
if (DEBUG) {
out.println("**********Updated Matrix**************");
}
UpdateMatrix(mh, removeHydrogen);
if (DEBUG) {
out.println("**********Generate Mapping**************");
}
GenerateMapping(ruleMatchingFlag);
}
}