public void mapNodeColumn(
final EncoreInteraction interaction, final CyRow sourceRow, final CyRow targetRow) {
final Map<String, String> accsSource = interaction.getInteractorAccsA();
processNames(sourceRow, accsSource);
final Map<String, List<String>> otherSource = interaction.getOtherInteractorAccsA();
processOtherNames(sourceRow, otherSource);
final Collection<CrossReference> speciesSource = interaction.getOrganismsA();
// Add Species names
if (speciesSource.size() != 0) {
CrossReference speciesSourceFirst = speciesSource.iterator().next();
processSpecies(sourceRow, speciesSourceFirst);
}
// Try to find human-readable gene name
guessHumanReadableName(sourceRow);
if (targetRow == null) {
return;
}
// If target exists...
final Map<String, String> accsTarget = interaction.getInteractorAccsB();
processNames(targetRow, accsTarget);
final Map<String, List<String>> otherTarget = interaction.getOtherInteractorAccsB();
processOtherNames(targetRow, otherTarget);
final Collection<CrossReference> speciesTarget = interaction.getOrganismsB();
if (speciesTarget.size() != 0) {
CrossReference speciesTargetFirst = speciesTarget.iterator().next();
processSpecies(targetRow, speciesTargetFirst);
}
guessHumanReadableName(targetRow);
}
