private void level2level3catalog(
RadarType radarType,
String pathInfo,
PrintWriter pw,
HttpServletRequest req,
HttpServletResponse res)
throws IOException {
try {
String type;
if (pathInfo.contains("level2")) type = radarType.toString() + "/level2";
else type = radarType.toString() + "/level3";
ByteArrayOutputStream os = new ByteArrayOutputStream(10000);
InvCatalogFactory factory = InvCatalogFactory.getDefaultFactory(false);
factory.writeXML(cat, os, true);
InvCatalogImpl tCat = factory.readXML(new ByteArrayInputStream(os.toByteArray()), catURI);
Iterator parents = tCat.getDatasets().iterator();
while (parents.hasNext()) {
ArrayList<InvDatasetImpl> delete = new ArrayList<InvDatasetImpl>();
InvDatasetImpl top = (InvDatasetImpl) parents.next();
Iterator tDatasets = top.getDatasets().iterator();
while (tDatasets.hasNext()) {
InvDatasetImpl ds = (InvDatasetImpl) tDatasets.next();
if (ds instanceof InvDatasetScan) {
InvDatasetScan ids = (InvDatasetScan) ds;
if (ids.getPath() == null) continue;
if (ids.getPath().contains(type)) {
ids.setXlinkHref(ids.getPath() + "/dataset.xml");
} else {
delete.add(ds);
}
}
}
// remove datasets
for (InvDatasetImpl idi : delete) {
top.removeDataset(idi);
}
}
if (pathInfo.endsWith("xml")) {
String catAsString = factory.writeXML(tCat);
pw.println(catAsString);
pw.flush();
} else {
HtmlWriter.getInstance().writeCatalog(req, res, tCat, true); // show catalog as HTML
}
} catch (Throwable e) {
log.error("RadarServer.level2level3catalog failed", e);
if (!res.isCommitted()) res.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
}
return;
}
public void init() throws ServletException {
super.init();
// allow = ThreddsConfig.getBoolean("NetcdfSubsetService.allow", true);
// String radarLevel2Dir = ThreddsConfig.get("NetcdfSubsetService.radarLevel2DataDir",
// "/data/ldm/pub/native/radar/level2/");
// if (!allow) return;
contentPath = ServletUtil.getContentPath();
rm = new RadarMethods(contentPath, logServerStartup);
// read in radarCollections.xml catalog
InvCatalogFactory factory = InvCatalogFactory.getDefaultFactory(false); // no validation
cat = readCatalog(factory, getPath() + catName, contentPath + getPath() + catName);
if (cat == null) {
logServerStartup.info("cat initialization failed");
return;
}
// URI tmpURI = cat.getBaseURI();
cat.setBaseURI(catURI);
// get path and location from cat
List parents = cat.getDatasets();
for (int i = 0; i < parents.size(); i++) {
InvDataset top = (InvDataset) parents.get(i);
datasets = top.getDatasets(); // dataset scans
for (int j = 0; j < datasets.size(); j++) {
InvDatasetScan ds = (InvDatasetScan) datasets.get(j);
if (ds.getPath() != null) {
dataLocation.put(ds.getPath(), ds.getScanLocation());
logServerStartup.info("path =" + ds.getPath() + " location =" + ds.getScanLocation());
}
ds.setXlinkHref(ds.getPath() + "/dataset.xml");
}
}
logServerStartup.info(getClass().getName() + " initialization complete ");
} // end init
public void afterPropertiesSet() {
// ToDo Instead of stdout, use servletContext.log( "...") [NOTE: it writes to localhost.*.log
// rather than catalina.out].
if (servletContext == null)
throw new IllegalArgumentException("ServletContext must not be null.");
// ToDo LOOK - Are we still using this.
ServletUtil.initDebugging(servletContext);
// Set the webapp name.
this.webappName = servletContext.getServletContextName();
// Set the context path.
// Servlet 2.5 allows the following.
// contextPath = servletContext.getContextPath();
String tmpContextPath =
servletContext.getInitParameter(
"ContextPath"); // cannot be overridden in the ThreddsConfig file
if (tmpContextPath == null) tmpContextPath = "thredds";
contextPath = "/" + tmpContextPath;
// ToDo LOOK - Get rid of need for setting contextPath in ServletUtil.
ServletUtil.setContextPath(contextPath);
// Set the root directory and source.
String rootPath = servletContext.getRealPath("/");
if (rootPath == null) {
String msg =
"Webapp ["
+ this.webappName
+ "] must run with exploded deployment directory (not from .war).";
System.out.println("ERROR - TdsContext.init(): " + msg);
// logServerStartup.error( "TdsContext.init(): " + msg );
throw new IllegalStateException(msg);
}
this.rootDirectory = new File(rootPath);
this.rootDirSource = new BasicDescendantFileSource(this.rootDirectory);
this.rootDirectory = this.rootDirSource.getRootDirectory();
// ToDo LOOK - Get rid of need for setting rootPath in ServletUtil.
ServletUtil.setRootPath(this.rootDirSource.getRootDirectoryPath());
// Set the startup (initial install) content directory and source.
this.startupContentDirectory = new File(this.rootDirectory, this.startupContentPath);
this.startupContentDirSource = new BasicDescendantFileSource(this.startupContentDirectory);
this.startupContentDirectory = this.startupContentDirSource.getRootDirectory();
this.webinfPath = this.rootDirectory + "/WEB-INF";
// set the tomcat logging directory
try {
String base = System.getProperty("catalina.base");
if (base != null) {
this.tomcatLogDir = new File(base, "logs").getCanonicalFile();
if (!this.tomcatLogDir.exists()) {
String msg = "'catalina.base' directory not found";
System.out.println("WARN - TdsContext.init(): " + msg);
// logServerStartup.error( "TdsContext.init(): " + msg );
}
} else {
String msg = "'catalina.base' property not found - probably not a tomcat server";
System.out.println("WARN - TdsContext.init(): " + msg);
// logServerStartup.warn( "TdsContext.init(): " + msg );
}
} catch (IOException e) {
String msg = "tomcatLogDir could not be created";
System.out.println("WARN - TdsContext.init(): " + msg);
// logServerStartup.error( "TdsContext.init(): " + msg );
}
// Set the content directory and source.
File contentRootDir = new File(this.contentRootPath);
if (!contentRootDir.isAbsolute())
this.contentDirectory =
new File(new File(this.rootDirectory, this.contentRootPath), this.contentPath);
else {
if (contentRootDir.isDirectory())
this.contentDirectory = new File(contentRootDir, this.contentPath);
else {
String msg = "Content root directory [" + this.contentRootPath + "] not a directory.";
System.out.println("ERROR - TdsContext.init(): " + msg);
// logServerStartup.error( "TdsContext.init(): " + msg );
throw new IllegalStateException(msg);
}
}
// If the content directory doesn't exist, try to copy startup content directory.
if (!this.contentDirectory.exists()) {
try {
IO.copyDirTree(this.startupContentDirectory.getPath(), this.contentDirectory.getPath());
} catch (IOException e) {
String tmpMsg = "Content directory does not exist and could not be created";
System.out.println(
"ERROR - TdsContext.init(): "
+ tmpMsg
+ " ["
+ this.contentDirectory.getAbsolutePath()
+ "].");
// logServerStartup.error( "TdsContext.init(): " + tmpMsg + " [" +
// this.contentDirectory.getAbsolutePath() + "]" );
throw new IllegalStateException(tmpMsg);
}
}
// If content directory exists, make sure it is a directory.
if (this.contentDirectory.isDirectory()) {
this.contentDirSource =
new BasicDescendantFileSource(
StringUtils.cleanPath(this.contentDirectory.getAbsolutePath()));
this.contentDirectory = this.contentDirSource.getRootDirectory();
} else {
String tmpMsg = "Content directory not a directory";
System.out.println(
"ERROR - TdsContext.init(): "
+ tmpMsg
+ " ["
+ this.contentDirectory.getAbsolutePath()
+ "].");
// logServerStartup.error( "TdsContext.init(): " + tmpMsg + " [" +
// this.contentDirectory.getAbsolutePath() + "]" );
throw new IllegalStateException(tmpMsg);
}
ServletUtil.setContentPath(this.contentDirSource.getRootDirectoryPath());
File logDir = new File(this.contentDirectory, "logs");
if (!logDir.exists()) {
if (!logDir.mkdirs()) {
String msg = "Couldn't create TDS log directory [" + logDir.getPath() + "].";
// System.out.println( "ERROR - TdsContext.init(): " + msg);
logServerStartup.error("TdsContext.init(): " + msg);
throw new IllegalStateException(msg);
}
}
String loggingDirectory = StringUtil2.substitute(logDir.getPath(), "\\", "/");
System.setProperty("tds.log.dir", loggingDirectory); // variable substitution
// LOOK Remove log4j init JC 6/13/2012
// which is used in log4j.xml file loaded here.
Log4jWebConfigurer.initLogging(servletContext);
logServerStartup.info("TdsConfigContextListener.contextInitialized() start[2]: ");
logServerStartup.info("TdsContext.init() intializating logging...");
// read in persistent user-defined params from threddsConfig.xml
File tdsConfigFile = this.contentDirSource.getFile(this.getTdsConfigFileName());
String tdsConfigFilename = tdsConfigFile != null ? tdsConfigFile.getPath() : "";
ThreddsConfig.init(tdsConfigFilename);
this.publicContentDirectory = new File(this.contentDirectory, "public");
if (!publicContentDirectory.exists()) {
if (!publicContentDirectory.mkdirs()) {
String msg =
"Couldn't create TDS public directory [" + publicContentDirectory.getPath() + "].";
// System.out.println( "ERROR - TdsContext.init(): " + msg);
logServerStartup.error("TdsContext.init(): " + msg);
throw new IllegalStateException(msg);
}
}
this.publicContentDirSource = new BasicDescendantFileSource(this.publicContentDirectory);
this.iddContentDirectory = new File(this.rootDirectory, this.iddContentPath);
this.iddContentPublicDirSource = new BasicDescendantFileSource(this.iddContentDirectory);
this.motherlodeContentDirectory = new File(this.rootDirectory, this.motherlodeContentPath);
this.motherlodeContentPublicDirSource =
new BasicDescendantFileSource(this.motherlodeContentDirectory);
List<DescendantFileSource> chain = new ArrayList<DescendantFileSource>();
DescendantFileSource contentMinusPublicSource =
new BasicWithExclusionsDescendantFileSource(
this.contentDirectory, Collections.singletonList("public"));
chain.add(contentMinusPublicSource);
for (String curContentRoot : ThreddsConfig.getContentRootList()) {
if (curContentRoot.equalsIgnoreCase("idd")) chain.add(this.iddContentPublicDirSource);
else if (curContentRoot.equalsIgnoreCase("motherlode"))
chain.add(this.motherlodeContentPublicDirSource);
else {
try {
chain.add(new BasicDescendantFileSource(StringUtils.cleanPath(curContentRoot)));
} catch (IllegalArgumentException e) {
String msg = "Couldn't add content root [" + curContentRoot + "]: " + e.getMessage();
// System.out.println( "WARN - TdsContext.init(): " + msg );
logServerStartup.warn("TdsContext.init(): " + msg, e);
}
}
}
this.configSource = new ChainedFileSource(chain);
this.publicDocSource = this.publicContentDirSource;
// ToDo LOOK Find a better way once thredds.catalog2 is used.
InvDatasetScan.setContext(contextPath);
InvDatasetScan.setCatalogServletName("/catalog");
InvDatasetFeatureCollection.setContext(contextPath);
// GridServlet.setContextPath( contextPath ); // Won't need when switch GridServlet to use Swing
// MVC and TdsContext
jspRequestDispatcher = servletContext.getNamedDispatcher("jsp");
defaultRequestDispatcher = servletContext.getNamedDispatcher("default");
TdsConfigMapper tdsConfigMapper = new TdsConfigMapper();
tdsConfigMapper.setTdsServerInfo(this.serverInfo);
tdsConfigMapper.setHtmlConfig(this.htmlConfig);
tdsConfigMapper.setWmsConfig(this.wmsConfig);
tdsConfigMapper.init(this);
}
private void datasetInfoHtml(
RadarType radarType, String pathInfo, PrintWriter pw, HttpServletResponse res)
throws IOException {
pathInfo = pathInfo.replace("/dataset.html", "");
pathInfo = pathInfo.replace("/catalog.html", "");
Element root = new Element("RadarNexrad");
Document doc = new Document(root);
if (pathInfo.startsWith("/")) pathInfo = pathInfo.substring(1);
for (int i = 0; i < datasets.size(); i++) {
InvDatasetScan ds = (InvDatasetScan) datasets.get(i);
if (!(pathInfo.equals(ds.getPath()))) {
continue;
}
// at this point a valid dataset
// fix the location
root.setAttribute("location", "/thredds/radarServer/" + ds.getPath());
// spatial range
ThreddsMetadata.GeospatialCoverage gc = ds.getGeospatialCoverage();
LatLonRect bb = new LatLonRect();
gc.setBoundingBox(bb);
String north = Double.toString(gc.getLatNorth());
String south = Double.toString(gc.getLatSouth());
String east = Double.toString(gc.getLonEast());
String west = Double.toString(gc.getLonWest());
Element LatLonBox = new Element("LatLonBox");
LatLonBox.addContent(new Element("north").addContent(north));
LatLonBox.addContent(new Element("south").addContent(south));
LatLonBox.addContent(new Element("east").addContent(east));
LatLonBox.addContent(new Element("west").addContent(west));
root.addContent(LatLonBox);
// get the time range
Element timeSpan = new Element("TimeSpan");
CalendarDateRange dr = ds.getCalendarDateCoverage();
timeSpan.addContent(new Element("begin").addContent(dr.getStart().toString()));
timeSpan.addContent(new Element("end").addContent(dr.getEnd().toString()));
root.addContent(timeSpan);
ThreddsMetadata.Variables cvs = (ThreddsMetadata.Variables) ds.getVariables().get(0);
List vl = cvs.getVariableList();
for (int j = 0; j < vl.size(); j++) {
ThreddsMetadata.Variable v = (ThreddsMetadata.Variable) vl.get(j);
Element variable = new Element("variable");
variable.setAttribute("name", v.getName());
root.addContent(variable);
}
// add pointer to the station list XML
/*
Element stnList = new Element("stationList");
stnList.setAttribute("title", "Available Stations", XMLEntityResolver.xlinkNS);
stnList.setAttribute("href", "/thredds/radarServer/"+ pathInfo +"/stations.xml",
XMLEntityResolver.xlinkNS);
root.addContent(stnList);
*/
// String[] stations = rns.stationsDS( dataLocation.get( ds.getPath() ));
// rns.printStations( stations );
// add accept list
Element a = new Element("AcceptList");
a.addContent(new Element("accept").addContent("xml"));
a.addContent(new Element("accept").addContent("html"));
root.addContent(a);
}
ServerMethods sm = new ServerMethods(log);
InputStream xslt = sm.getInputStream(contentPath + getPath() + "radar.xsl", RadarServer.class);
try {
// what's wrong here xslt = getXSLT( "radar.xsl" );
XSLTransformer transformer = new XSLTransformer(xslt);
Document html = transformer.transform(doc);
XMLOutputter fmt = new XMLOutputter(Format.getPrettyFormat());
String infoString = fmt.outputString(html);
res.setContentType("text/html; charset=iso-8859-1");
pw = res.getWriter();
pw.println(infoString);
pw.flush();
} catch (Exception e) {
log.error("radarServer reading " + contentPath + getPath() + "radar.xsl");
log.error("radarServer XSLTransformer problem for web form ", e);
} finally {
if (xslt != null) {
try {
xslt.close();
} catch (IOException e) {
log.error("radarServer radar.xsl: error closing" + contentPath + getPath() + "radar.xsl");
}
}
}
return;
}
private void datasetInfoXml(RadarType radarType, String pathInfo, PrintWriter pw)
throws IOException {
try {
pw.println(
"<catalog xmlns=\"http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" name=\"Radar Data\" version=\"1.0.1\">\n");
// add service
pw.println(
" <service name=\"radarServer\" base=\"/thredds/radarServer/\" serviceType=\"DQC\" />\n");
pathInfo = pathInfo.replace("/dataset.xml", "");
pathInfo = pathInfo.replace("/catalog.xml", "");
if (pathInfo.startsWith("/")) pathInfo = pathInfo.substring(1);
for (int i = 0; i < datasets.size(); i++) {
InvDatasetScan ds = (InvDatasetScan) datasets.get(i);
if (!(pathInfo.equals(ds.getPath()))) {
continue;
}
pw.println(" <dataset ID=\"" + ds.getID() + "\" serviceName=\"radarServer\">");
pw.println(" <urlpath>" + ds.getPath() + "</urlpath>");
pw.println(" <dataType>" + ds.getDataType() + "</dataType>");
pw.println(" <dataFormat>" + ds.getDataFormatType() + "</dataFormat>");
pw.println(" <serviceName>radarServer</serviceName>");
pw.println(" <metadata inherited=\"true\">");
pw.println(" <documentation type=\"summary\">" + ds.getSummary() + "</documentation>");
CalendarDateRange dr = ds.getCalendarDateCoverage();
pw.println(" <TimeSpan>");
pw.print(" <start>");
if (pathInfo.contains("IDD")) {
pw.print(rm.getStartDateTime(ds.getPath()));
} else {
pw.print(dr.getStart().toString());
}
pw.println("</start>");
pw.println(" <end>" + dr.getEnd().toString() + "</end>");
pw.println(" </TimeSpan>");
ThreddsMetadata.GeospatialCoverage gc = ds.getGeospatialCoverage();
LatLonRect bb = new LatLonRect();
gc.setBoundingBox(bb);
pw.println(" <LatLonBox>");
pw.println(" <north>" + gc.getLatNorth() + "</north>");
pw.println(" <south>" + gc.getLatSouth() + "</south>");
pw.println(" <east>" + gc.getLonEast() + "</east>");
pw.println(" <west>" + gc.getLonWest() + "</west>");
pw.println(" </LatLonBox>");
ThreddsMetadata.Variables cvs = (ThreddsMetadata.Variables) ds.getVariables().get(0);
List vl = cvs.getVariableList();
pw.println(" <Variables>");
for (int j = 0; j < vl.size(); j++) {
ThreddsMetadata.Variable v = (ThreddsMetadata.Variable) vl.get(j);
pw.println(
" <variable name=\""
+ v.getName()
+ "\" vocabulary_name=\""
+ v.getVocabularyName()
+ "\" units=\""
+ v.getUnits()
+ "\" />");
}
pw.println(" </Variables>");
String[] stations = rm.stationsDS(radarType, dataLocation.get(ds.getPath()));
rm.printStations(stations, pw, radarType);
pw.println(" </metadata>");
pw.println(" </dataset>");
}
pw.println("</catalog>");
pw.flush();
} catch (Throwable e) {
log.error("RadarServer.datasetInfoXml", e);
}
return;
}