private void readDomain(String element, XMLElement datadict) {
for (int df = 0; df < datadict.getChildCount(); df++) {
if (datadict.getChild(df).getStringAttribute("name").equals(element)) {
// add the prob for each node
String[] probs = {};
for (int val = 0; val < datadict.getChild(df).getChildCount(); val++) {
if (datadict.getChild(df).getChild(val).getName().equals("Extension")) {
XMLElement ext = datadict.getChild(df).getChild(val);
for (int x = 0; x < ext.getChildCount(); x++) {
if (ext.getChild(x).getName().equals("X-Definition")) {
probs = ext.getChild(x).getChild(0).getContent().split(" ");
break;
}
}
break;
}
}
// create a node for each value
int valIdx = 0;
for (int val = 0; val < datadict.getChild(df).getChildCount(); val++) {
if (datadict.getChild(df).getChild(val).getName().equals("Value")) {
float prob = Float.valueOf(probs[valIdx++]);
//
// this.addNode(datadict.getChild(df).getChild(val).getStringAttribute("value")).setProb(prob);
if (!this.domains.containsKey(element))
this.domains.put(element, new ArrayList<String>());
if (!this.probabilities.containsKey(element))
this.probabilities.put(element, new HashMap<String, Float>());
this.domains
.get(element)
.add(datadict.getChild(df).getChild(val).getStringAttribute("value"));
this.probabilities
.get(element)
.put(datadict.getChild(df).getChild(val).getStringAttribute("value"), prob);
}
}
break;
}
}
}
/** Loads track segments of a GPX file, and returns them as a single line marker. */
public static List<Feature> loadData(PApplet p, String gpxFilename) {
List<Feature> trackFeatures = new ArrayList<Feature>();
// Load GPX file
XMLElement gpx = new XMLElement(p, gpxFilename);
// Create track with all track points
ShapeFeature trackFeature = new ShapeFeature(FeatureType.LINES);
XMLElement[] itemXMLElements = gpx.getChildren("trk/trkseg/trkpt");
for (int i = 0; i < itemXMLElements.length; i++) {
// Adds location for track point
float lat = itemXMLElements[i].getFloat("lat");
float lon = itemXMLElements[i].getFloat("lon");
Location location = new Location(lat, lon);
trackFeature.addLocation(location);
}
// Add time as property
XMLElement timeXMLElement = gpx.getChild("trk/time");
trackFeature.addProperty("time", timeXMLElement.getContent());
trackFeatures.add(trackFeature);
return trackFeatures;
}
/* */ public boolean equals(Object object)
/* */ {
/* 1350 */ if (!(object instanceof XMLElement)) {
/* 1351 */ return false;
/* */ }
/* 1353 */ XMLElement rawElement = (XMLElement)object;
/* */
/* 1355 */ if (!this.name.equals(rawElement.getLocalName())) {
/* 1356 */ return false;
/* */ }
/* 1358 */ if (this.attributes.size() != rawElement.getAttributeCount()) {
/* 1359 */ return false;
/* */ }
/* 1361 */ Enumeration<XMLAttribute> en = this.attributes.elements();
/* 1362 */ while (en.hasMoreElements()) {
/* 1363 */ XMLAttribute attr = (XMLAttribute)en.nextElement();
/* */
/* 1365 */ if (!rawElement.hasAttribute(attr.getName())) {
/* 1366 */ return false;
/* */ }
/* */
/* */
/* */
/* 1371 */ String value = rawElement.getString(attr.getName(), null);
/* 1372 */ if (!attr.getValue().equals(value)) {
/* 1373 */ return false;
/* */ }
/* */ }
/* */
/* */
/* */
/* */
/* */
/* 1381 */ if (this.children.size() != rawElement.getChildCount()) {
/* 1382 */ return false;
/* */ }
/* 1384 */ for (int i = 0; i < this.children.size(); i++) {
/* 1385 */ XMLElement child1 = getChild(i);
/* 1386 */ XMLElement child2 = rawElement.getChild(i);
/* */
/* 1388 */ if (!child1.equals(child2)) {
/* 1389 */ return false;
/* */ }
/* */ }
/* 1392 */ return true;
/* */ }
public void initXMLObject() {
numProfiles = xmlFeed.getChildCount();
println("NUM PROFILES: " + numProfiles);
for (int i = 0; i < numProfiles; i++) {
XMLElement profile = xmlFeed.getChild(i);
/// *
try {
headerList.add(profile.getChild(0).getContent());
nameList.add(profile.getChild(1).getContent());
blurbList.add(profile.getChild(2).getContent());
// videoPathList.add(profile.getChild(3).getContent());
thePopUp.videoPath.add(profile.getChild(3).getContent());
latList.add(profile.getChild(4).getContent());
longList.add(profile.getChild(5).getContent());
pApp.println("Title= " + profile.getChild(0).getContent());
pApp.println("Name= " + profile.getChild(1).getContent());
pApp.println("Blurb= " + profile.getChild(2).getContent());
// pApp.println("video = " + profile.getChild(3).getContent());
pApp.println("Address = " + profile.getChild(4).getContent());
// pApp.println("long = " + profile.getChild(5).getContent());
// pApp.println(" ");
pApp.println(" ");
} catch (Exception e) {
println("XML init error: " + e);
}
}
/// now that the popup video array has data, init the video
thePopUp.initVideo();
/// convert the lat and long string to floats
initLocations();
}
public void loadData() {
XMLElement xml = new XMLElement(this, filename);
// pmml
for (int i = 0; i < xml.getChildCount(); i++) {
if (!xml.getChild(i).getName().equals("DataDictionary")) {
continue;
}
XMLElement datadict = xml.getChild(i);
// read node domains from PMML
readDomain(actionT, datadict);
readDomain(objActedOn, datadict);
readDomain(toLocation, datadict);
readDomain(errorT, datadict);
readDomain(groupT, datadict);
readDomain(fromLocation, datadict);
// TODO: create separate graphs for each activity
///////////////////////////////////////
// read edges
// find precedes predicate
for (int df = 0; df < datadict.getChildCount(); df++) {
if (datadict.getChild(df).getStringAttribute("name").equals(precedes)) {
// find Extension module
for (int val = 0; val < datadict.getChild(df).getChildCount(); val++) {
if (datadict.getChild(df).getChild(val).getName().equals("Extension")) {
XMLElement ext = datadict.getChild(df).getChild(val);
// find the X-Table inside the X-Definition
for (int x = 0; x < ext.getChildCount(); x++) {
if (ext.getChild(x).getName().equals("X-Definition")) {
for (int xx = 0; xx < ext.getChild(x).getChildCount(); xx++) {
if (!ext.getChild(x).getChild(xx).getName().equals("X-Table")) {
continue;
}
// read all the cond. probabilities
String[] cpt = ext.getChild(x).getChild(xx).getContent().split(" ");
// iterate across the table of conditional probabilities and link the nodes
// accordingly
// healthinf-trials
// <X-Given>0</X-Given> <!-- objActedOn(a1) -->
// <X-Given>1</X-Given> <!-- errorT(e) -->
// <X-Given>2</X-Given> <!-- groupT(g) -->
// <X-Given>3</X-Given> <!-- toLocation(a1) -->
// <X-Given>4</X-Given> <!-- actionT(a1) -->
// <X-Given>6</X-Given> <!-- #actionT(a2) -->
// <X-Given>7</X-Given> <!-- #objActedOn(a2) -->
// <X-Given>8</X-Given> <!-- #toLocation(a2) -->
// <X-Given>9</X-Given> <!-- !(a1=a2) -->
// int blocksize_obj1 = domains.get(errorT).size() *
// domains.get(groupT).size() * domains.get(toLocation).size() *
// domains.get(actionT).size() * domains.get(actionT).size() *
// domains.get(objActedOn).size() * domains.get(toLocation).size();
// int blocksize_error = domains.get(groupT).size() *
// domains.get(toLocation).size() * domains.get(actionT).size() *
// domains.get(actionT).size() * domains.get(objActedOn).size() *
// domains.get(toLocation).size();
// int blocksize_group = domains.get(toLocation).size() *
// domains.get(actionT).size() * domains.get(actionT).size() *
// domains.get(objActedOn).size() * domains.get(toLocation).size();
// int blocksize_toLoc1 = domains.get(actionT).size() *
// domains.get(actionT).size() * domains.get(objActedOn).size() *
// domains.get(toLocation).size();
// int blocksize_action1 = domains.get(actionT).size() *
// domains.get(objActedOn).size() * domains.get(toLocation).size();
// int blocksize_action2 = domains.get(objActedOn).size() *
// domains.get(toLocation).size();
// int blocksize_obj2 = domains.get(toLocation).size();
// int blocksize_toLoc2 = 1;
// healthinf-finals (incl. fromlocation)
// <X-Given>0</X-Given> <!-- objActedOn(a1) -->
// <X-Given>1</X-Given> <!-- errorT(e) -->
// <X-Given>2</X-Given> <!-- groupT(g) -->
// <X-Given>3</X-Given> <!-- fromLocation(a1) -->
// <X-Given>4</X-Given> <!-- toLocation(a1) -->
// <X-Given>5</X-Given> <!-- actionT(a1) -->
// <X-Given>7</X-Given> <!-- #actionT(a2) -->
// <X-Given>8</X-Given> <!-- #objActedOn(a2) -->
// <X-Given>9</X-Given> <!-- #toLocation(a2) -->
// <X-Given>10</X-Given> <!-- #fromLocation(a2) -->
// <X-Given>11</X-Given> <!-- !(a1=a2) -->
int blocksize_obj1 =
domains.get(errorT).size()
* domains.get(groupT).size()
* domains.get(fromLocation).size()
* domains.get(toLocation).size()
* domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_error =
domains.get(groupT).size()
* domains.get(fromLocation).size()
* domains.get(toLocation).size()
* domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_group =
domains.get(fromLocation).size()
* domains.get(toLocation).size()
* domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_fromLoc1 =
domains.get(toLocation).size()
* domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_toLoc1 =
domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_action1 =
domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_action2 =
domains.get(objActedOn).size()
* domains.get(toLocation).size()
* domains.get(fromLocation).size();
int blocksize_obj2 =
domains.get(toLocation).size() * domains.get(fromLocation).size();
int blocksize_toLoc2 = domains.get(fromLocation).size();
int blocksize_fromLoc2 = 1;
System.err.println("CPT size: " + cpt.length);
System.err.println(
"Domain sizes: "
+ domains.get(objActedOn).size()
* domains.get(errorT).size()
* domains.get(groupT).size()
* domains.get(fromLocation).size()
* domains.get(toLocation).size()
* domains.get(actionT).size()
* domains.get(actionT).size()
* domains.get(objActedOn).size()
* domains.get(fromLocation).size()
* domains.get(toLocation).size());
for (int obj1 = 0; obj1 < domains.get(objActedOn).size(); obj1++) { // #elem 10
for (int error = 0; error < domains.get(errorT).size(); error++) { // #elem 1
for (int group = 0;
group < domains.get(groupT).size();
group++) { // #elem 1
for (int fromLoc1 = 0;
fromLoc1 < domains.get(fromLocation).size();
fromLoc1++) {
for (int toLoc1 = 0;
toLoc1 < domains.get(toLocation).size();
toLoc1++) { // #elem 5
for (int action1 = 0;
action1 < domains.get(actionT).size();
action1++) { // #elem 3
for (int action2 = 0;
action2 < domains.get(actionT).size();
action2++) { // #elem 3
for (int obj2 = 0;
obj2 < domains.get(objActedOn).size();
obj2++) { // #elem 10
for (int fromLoc2 = 0;
fromLoc2 < domains.get(fromLocation).size();
fromLoc2++) { // #elem 5
for (int toLoc2 = 0;
toLoc2 < domains.get(toLocation).size();
toLoc2++) { // #elem 5
// total: 1 166 400 blocks in the CPT, each block four
// numbers ((a1=a2) plus true/false)
// TODO: modify this loop to take the different parents into
// account
// -> also read labels for parents and add separate
// nodes for each combination
float condA1A2 =
Float.valueOf(
cpt[
4
* (obj1 * blocksize_obj1
+ error * blocksize_error
+ group * blocksize_group
+ fromLoc1 * blocksize_fromLoc1
+ toLoc1 * blocksize_toLoc1
+ action1 * blocksize_action1
+ action2 * blocksize_action2
+ obj2 * blocksize_obj2
+ fromLoc2 * blocksize_fromLoc2
+ toLoc2 * blocksize_toLoc2)]);
if (condA1A2 > 0.0) {
// search for nodes, create if don't exist yet
Node from = null;
// use toLocation only if not empty
if (!domains.get(toLocation).get(toLoc1).equals("No_from")
&& !domains
.get(toLocation)
.get(toLoc1)
.equals("No_to")) {
from =
this.findNode(
domains.get(actionT).get(action1)
+ " "
+ domains.get(objActedOn).get(obj1)
+ " to "
+ domains.get(toLocation).get(toLoc1));
from.prob =
probabilities
.get(actionT)
.get(domains.get(actionT).get(action1))
* probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj1))
* probabilities
.get(toLocation)
.get(domains.get(toLocation).get(toLoc1));
if (from.prob > 0.000002) {
System.err.println(
from.getName()
+ ": "
+ probabilities
.get(actionT)
.get(domains.get(actionT).get(action1))
+ " * "
+ probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj1))
+ " * "
+ probabilities
.get(toLocation)
.get(
domains.get(toLocation).get(toLoc1)));
}
} else if (!domains
.get(fromLocation)
.get(fromLoc1)
.equals("No_from")
&& !domains
.get(fromLocation)
.get(fromLoc1)
.equals("No_to")) {
from =
this.findNode(
domains.get(actionT).get(action1)
+ " "
+ domains.get(objActedOn).get(obj1)
+ " from "
+ domains.get(fromLocation).get(fromLoc1));
from.prob =
probabilities
.get(actionT)
.get(domains.get(actionT).get(action1))
* probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj1))
* probabilities
.get(fromLocation)
.get(
domains
.get(fromLocation)
.get(fromLoc1));
if (from.prob > 0.000002) {
System.err.println(
from.getName()
+ ": "
+ probabilities
.get(actionT)
.get(domains.get(actionT).get(action1))
+ " * "
+ probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj1))
+ " * "
+ probabilities
.get(fromLocation)
.get(
domains
.get(fromLocation)
.get(fromLoc1)));
}
}
if (from != null)
System.err.println(from.getName() + ": " + from.prob);
Node to = null;
if (!domains.get(toLocation).get(toLoc2).equals("No_from")
&& !domains
.get(toLocation)
.get(toLoc2)
.equals("No_to")) {
to =
this.findNode(
domains.get(actionT).get(action2)
+ " "
+ domains.get(objActedOn).get(obj2)
+ " to "
+ domains.get(toLocation).get(toLoc2));
to.prob =
probabilities
.get(actionT)
.get(domains.get(actionT).get(action2))
* probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj2))
* probabilities
.get(toLocation)
.get(domains.get(toLocation).get(toLoc2));
if (to.prob > 0.000002) {
System.err.println(
to.getName()
+ ": "
+ probabilities
.get(actionT)
.get(domains.get(actionT).get(action2))
+ " * "
+ probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj2))
+ " * "
+ probabilities
.get(toLocation)
.get(
domains.get(toLocation).get(toLoc2)));
}
} else if (!domains
.get(fromLocation)
.get(fromLoc2)
.equals("No_from")
&& !domains
.get(fromLocation)
.get(fromLoc2)
.equals("No_to")) {
to =
this.findNode(
domains.get(actionT).get(action2)
+ " "
+ domains.get(objActedOn).get(obj2)
+ " from "
+ domains.get(fromLocation).get(fromLoc2));
to.prob =
probabilities
.get(actionT)
.get(domains.get(actionT).get(action2))
* probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj2))
* probabilities
.get(fromLocation)
.get(
domains
.get(fromLocation)
.get(fromLoc2));
if (to.prob > 0.000002) {
System.err.println(
to.getName()
+ ": "
+ probabilities
.get(actionT)
.get(domains.get(actionT).get(action2))
+ " * "
+ probabilities
.get(objActedOn)
.get(domains.get(objActedOn).get(obj2))
+ " * "
+ probabilities
.get(fromLocation)
.get(
domains
.get(fromLocation)
.get(fromLoc2)));
}
}
if (to != null) {
System.err.println(to.getName() + ": " + to.prob);
// System.err.println(to.getName()
// + ": "
// probabilities.get(domains.get(actionT).get(action2)));
}
if (from != null && to != null)
this.addEdge(from.label, to.label, condA1A2);
}
}
}
}
}
}
}
}
}
}
}
break;
}
}
}
break;
}
}
break;
}
}
}
}
/* The format of the grid parameters is the following:
* <grid>
* <resolution nx=10 ny=10></resolution>
* <point>
* <coord x="0.5" y="+0.5"></coord>
* <texcoord s="0.0" t="1.0"></texcoord>
* </point>
* <point>
* <coord x="x" y="y"></coord>
* <texcoord s="s" t="t"></texcoord>
* </point>
* </grid>
*/
protected void initGrid(XMLElement xml) {
int n = xml.getChildCount();
// if there is only one parameter line, it should contain the
// grid dimensions.
if (n == 1) {
numLayers = 1;
} else {
numLayers = n - 1;
}
points = new GLTexturedPoint[numLayers];
XMLElement child;
String name, wStr, hStr, modeName;
int ptLayer = 0;
for (int i = 0; i < n; i++) {
child = xml.getChild(i);
name = child.getName();
if (name.equals("resolution")) {
wStr = child.getStringAttribute("nx");
hStr = child.getStringAttribute("ny");
usingSrcTexRes = false;
if (wStr.equals("w")) resX = 0;
else if (wStr.equals("w0")) resX = -1;
else if (wStr.equals("w1")) resX = -2;
else if (wStr.equals("w2")) resX = -3;
else if (wStr.equals("w3")) resX = -4;
else if (wStr.equals("w4")) resX = -5;
else if (wStr.equals("w5")) resX = -6;
else resX = child.getIntAttribute("nx");
if (hStr.equals("h")) resY = 0;
else if (hStr.equals("h0")) resY = -1;
else if (hStr.equals("h1")) resY = -2;
else if (hStr.equals("h2")) resY = -3;
else if (hStr.equals("h3")) resY = -4;
else if (hStr.equals("h4")) resY = -5;
else if (hStr.equals("h5")) resY = -6;
else resY = child.getIntAttribute("ny");
if ((resX <= 0) || (resY <= 0))
if (resX != resY) System.err.println("Source width and height are different!");
else if (resX < 0) {
usingSrcTexRes = true;
srcTexIdx = -(resX + 1);
}
modeName = child.getStringAttribute("mode");
mode = GLUtils.parsePrimitiveType(modeName);
} else if (name.equals("point")) {
points[ptLayer] = new GLTexturedPoint(child);
ptLayer++;
}
}
if (n == 1) {
points[0] = new GLTexturedPoint();
points[0].setAsUndefined();
}
}