/**
* Parse the repository.
*
* @param parser
* @throws Exception
*/
private void parseRepository(XmlPullParser parser) throws Exception {
try {
parser.require(XmlPullParser.START_DOCUMENT, null, null);
parser.nextTag();
if (parser.getName().equals("bundles")) parseOscar(parser);
else {
parser.require(XmlPullParser.START_TAG, null, "repository");
date = parser.getAttributeValue(null, "lastmodified");
name = parser.getAttributeValue(null, "name");
if (name == null) name = "Untitled";
while (parser.nextTag() == XmlPullParser.START_TAG) {
if (parser.getName().equals("resource")) {
ResourceImpl resource = new ResourceImpl(this, parser);
resources.add(resource);
} else if (parser.getName().equals("referral")) referral(parser);
else
throw new IllegalArgumentException(
"Invalid tag in repository: " + url + " " + parser.getName());
}
parser.require(XmlPullParser.END_TAG, null, "repository");
}
} catch (XmlPullParserException e) {
e.printStackTrace();
throw new IllegalArgumentException(
"XML unregognized around: " + e.getLineNumber() + " " + e.getMessage());
}
}
/**
* Opens a file chooser for importing method settings.
*
* @param evt
*/
private void browseConfigButtonActionPerformed(
java.awt.event.ActionEvent evt) { // GEN-FIRST:event_browseConfigButtonActionPerformed
if (txtConfigurationFileLocation.getText().length() > 0) {
newDialog
.getReporterGui()
.getLastSelectedFolder()
.setLastSelectedFolder(txtConfigurationFileLocation.getText());
}
File selectedFile =
Util.getUserSelectedFile(
this,
".xml",
"Reporter Method File (*.xml)",
"Select Settings File",
newDialog.getReporterGui().getLastSelectedFolder().getLastSelectedFolder(),
null,
true);
if (selectedFile != null) {
try {
methodsFactory.importMethods(selectedFile);
newDialog.setSelectedMethod(newDialog.getMethod(newDialog.getSelectedMethod().getName()));
newDialog.setReagents(newDialog.getSelectedMethod().getReagentsSortedByMass());
refresh();
txtConfigurationFileLocation.setText(selectedFile.getAbsolutePath());
newDialog.setMethodsFile(selectedFile);
newDialog
.getReporterGui()
.getLastSelectedFolder()
.setLastSelectedFolder(selectedFile.getPath());
} catch (IOException e) {
JOptionPane.showMessageDialog(
null,
"File " + selectedFile.getAbsolutePath() + " not found.",
"File Not Found",
JOptionPane.WARNING_MESSAGE);
} catch (XmlPullParserException e) {
JOptionPane.showMessageDialog(
null,
"An error occurred while parsing "
+ selectedFile.getAbsolutePath()
+ " at line "
+ e.getLineNumber()
+ ".",
"Parsing Error",
JOptionPane.WARNING_MESSAGE);
e.printStackTrace();
}
}
} // GEN-LAST:event_browseConfigButtonActionPerformed