/**
* make a form suitable to 1) reconstruct the original given access to starting conditions
*
* @param adder !null where to put the data
*/
@Override
public void serializeAsString(IXMLAppender adder) {
String tag = TAG;
adder.openTag(tag);
adder.appendAttribute(
"precursorIntensity", XTandemUtilities.formatDouble(getPrecursorIntensity(), 1));
adder.appendAttribute("precursorCharge", Integer.toString(getPrecursorCharge()));
FragmentationMethod method = getMethod();
if (method == null) method = FragmentationMethod.CID;
adder.appendAttribute("activationMethod", method);
adder.endTag();
adder.appendText(XTandemUtilities.formatDouble(getMassChargeRatio(), 3));
adder.closeTag(tag);
}
/**
* make a form suitable to 1) reconstruct the original given access to starting conditions
*
* @param adder !null where to put the data
*/
public void serializeAsString(IXMLAppender adder) {
String[] algorithms = getScoringAlgorithms();
String tag = TAG;
adder.openTag(tag);
adder.endTag();
adder.cr();
for (int i = 0; i < algorithms.length; i++) {
String algorithm = algorithms[i];
IScoredScan scoredScan = getScoredScan(algorithm);
scoredScan.serializeAsString(adder);
}
adder.closeTag(tag);
}