/**
  * make a form suitable to 1) reconstruct the original given access to starting conditions
  *
  * @param adder !null where to put the data
  */
 @Override
 public void serializeAsString(IXMLAppender adder) {
   String tag = TAG;
   adder.openTag(tag);
   adder.appendAttribute(
       "precursorIntensity", XTandemUtilities.formatDouble(getPrecursorIntensity(), 1));
   adder.appendAttribute("precursorCharge", Integer.toString(getPrecursorCharge()));
   FragmentationMethod method = getMethod();
   if (method == null) method = FragmentationMethod.CID;
   adder.appendAttribute("activationMethod", method);
   adder.endTag();
   adder.appendText(XTandemUtilities.formatDouble(getMassChargeRatio(), 3));
   adder.closeTag(tag);
 }
Ejemplo n.º 2
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  /**
   * make a form suitable to 1) reconstruct the original given access to starting conditions
   *
   * @param adder !null where to put the data
   */
  public void serializeAsString(IXMLAppender adder) {
    String[] algorithms = getScoringAlgorithms();

    String tag = TAG;
    adder.openTag(tag);
    adder.endTag();
    adder.cr();

    for (int i = 0; i < algorithms.length; i++) {
      String algorithm = algorithms[i];
      IScoredScan scoredScan = getScoredScan(algorithm);
      scoredScan.serializeAsString(adder);
    }
    adder.closeTag(tag);
  }