/** ************************************************************************* * * Constructor */
public ExpressionEntry(
BTState appState,
String region,
String time,
String expr,
String source,
String confidence,
String strategySource,
String startStrategy,
String endStrategy,
String variable)
throws IOException {
region_ = region;
try {
time_ = Integer.parseInt(time);
} catch (NumberFormatException nfex) {
throw new IOException();
}
TimeAxisDefinition tad = appState.getDB().getTimeAxisDefinition();
if (!tad.timeIsOk(time_)) {
throw new IOException();
}
if (expr == null) {
throw new IOException();
} else {
expr = expr.trim();
try {
expr_ = mapFromExpressionTag(expr);
} catch (IllegalArgumentException iaex) {
throw new IOException();
}
}
if (expr_ == VARIABLE) {
if (variable == null) {
throw new IOException();
}
try {
variable_ = Double.parseDouble(variable);
} catch (NumberFormatException nfex) {
throw new IOException();
}
if ((variable_ < 0.0) || (variable_ > 1.0)) {
throw new IOException();
}
}
if (source == null) {
source_ = NO_SOURCE_SPECIFIED;
} else {
source = source.trim();
try {
source_ = mapFromSourceTag(source);
} catch (IllegalArgumentException iaex) {
throw new IOException();
}
}
if (strategySource == null) {
strategySource_ = NO_SOURCE_SPECIFIED;
} else {
strategySource = strategySource.trim();
try {
strategySource_ = mapFromSourceTag(strategySource);
} catch (IllegalArgumentException iaex) {
throw new IOException();
}
}
if (confidence == null) {
confidence_ = TimeCourseGene.USE_BASE_CONFIDENCE;
} else {
confidence = confidence.trim();
if (confidence.equalsIgnoreCase("normal")) {
confidence_ = TimeCourseGene.NORMAL_CONFIDENCE;
} else if (confidence.equalsIgnoreCase("interpolated")) {
confidence_ = TimeCourseGene.INTERPOLATED;
} else if (confidence.equalsIgnoreCase("assumption")) {
confidence_ = TimeCourseGene.ASSUMPTION;
} else if (confidence.equalsIgnoreCase("inferred")) {
confidence_ = TimeCourseGene.INFERRED;
} else if (confidence.equalsIgnoreCase("questionable")) {
confidence_ = TimeCourseGene.QUESTIONABLE;
} else {
throw new IOException();
}
}
try {
startStrategy_ = calculateStrategy(startStrategy, true);
endStrategy_ = calculateStrategy(endStrategy, false);
} catch (IllegalArgumentException iae) {
throw new IOException();
}
}
