public void setOntology(OWLOntology ont) {
this.ont = ont;
List<Object> data = new ArrayList<>();
data.add(directImportsHeader);
// @@TODO ordering
for (OWLImportsDeclaration decl : ont.getImportsDeclarations()) {
data.add(new OntologyImportItem(ont, decl, editorKit));
}
data.add(indirectImportsHeader);
// @@TODO ordering
try {
for (OWLOntology ontRef :
editorKit.getOWLModelManager().getOWLOntologyManager().getImportsClosure(ont)) {
if (!ontRef.equals(ont)) {
for (OWLImportsDeclaration dec : ontRef.getImportsDeclarations()) {
if (!data.contains(dec)) {
data.add(new OntologyImportItem(ontRef, dec, editorKit));
}
}
}
}
} catch (UnknownOWLOntologyException e) {
throw new OWLRuntimeException(e);
}
setListData(data.toArray());
}
public void mergeOntologies() {
List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
for (OWLOntology ont : ontologies) {
if (!ont.equals(targetOntology)) {
// move the axioms
for (OWLAxiom ax : ont.getAxioms()) {
changes.add(new AddAxiom(targetOntology, ax));
}
// move ontology annotations
for (OWLAnnotation annot : ont.getAnnotations()) {
changes.add(new AddOntologyAnnotation(targetOntology, annot));
}
if (!targetOntology.getOntologyID().isAnonymous()) {
// move ontology imports
for (OWLImportsDeclaration decl : ont.getImportsDeclarations()) {
if (ontologies.contains(ont.getOWLOntologyManager().getImportedOntology(decl))) {
continue;
}
Optional<IRI> defaultDocumentIRI =
targetOntology.getOntologyID().getDefaultDocumentIRI();
if (defaultDocumentIRI.isPresent() && !decl.getIRI().equals(defaultDocumentIRI.get())) {
changes.add(new AddImport(targetOntology, decl));
} else {
logger.warn(
"Merge: ignoring import declaration for ontology "
+ targetOntology.getOntologyID()
+ " (would result in target ontology importing itself).");
}
}
}
}
}
try {
owlOntologyManager.applyChanges(changes);
} catch (OWLOntologyChangeException e) {
ErrorLogPanel.showErrorDialog(e);
}
}
/**
* Determines if the reference ontology (if set) is equal to the active ontology.
*
* @return <code>true</code> if the reference ontology is equal to the active ontology, otherwise
* <code>false</code>.
*/
public boolean isReferenceOntologyActive() {
return ontology != null && ontology.equals(editorKit.getOWLModelManager().getActiveOntology());
}