public Set<OWLAxiom> write(OWLAnnotationProperty property) {
Set<OWLAxiom> axioms = new HashSet<OWLAxiom>();
axioms.addAll(writeEntityStart(ANNOTATION_PROPERTY, property));
if (!isFiltered(AxiomType.ANNOTATION_ASSERTION)) {
for (OWLOntology ont : getOntologies()) {
Set<OWLAnnotation> annos = new TreeSet<OWLAnnotation>();
for (OWLAnnotationAssertionAxiom ax : ont.getAnnotationAssertionAxioms(property.getIRI())) {
if (isDisplayed(ax)) {
annos.add(ax.getAnnotation());
}
}
writeSection(ANNOTATIONS, annos, ",", true, ont);
}
}
if (!isFiltered(AxiomType.SUB_ANNOTATION_PROPERTY_OF)) {
for (OWLOntology ont : getOntologies()) {
Set<OWLAnnotationProperty> props = new TreeSet<OWLAnnotationProperty>();
for (OWLSubAnnotationPropertyOfAxiom ax : ont.getSubAnnotationPropertyOfAxioms(property)) {
if (isDisplayed(ax)) {
props.add(ax.getSuperProperty());
}
}
writeSection(SUB_PROPERTY_OF, props, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_DOMAIN)) {
for (OWLOntology ont : getOntologies()) {
Set<IRI> iris = new TreeSet<IRI>();
for (OWLAnnotationPropertyDomainAxiom ax :
ont.getAnnotationPropertyDomainAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getDomain());
}
}
writeSection(DOMAIN, iris, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_RANGE)) {
for (OWLOntology ont : getOntologies()) {
Set<IRI> iris = new TreeSet<IRI>();
for (OWLAnnotationPropertyRangeAxiom ax : ont.getAnnotationPropertyRangeAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getRange());
}
}
writeSection(RANGE, iris, ",", true, ont);
}
}
writeEntitySectionEnd(ANNOTATION_PROPERTY.toString());
return axioms;
}
public Set<OWLAnnotationAssertionAxiom> writeAnnotations(OWLAnnotationSubject subject) {
Set<OWLAnnotationAssertionAxiom> axioms = new HashSet<OWLAnnotationAssertionAxiom>();
if (!isFiltered(AxiomType.ANNOTATION_ASSERTION)) {
for (OWLOntology ontology : getOntologies()) {
SectionMap sectionMap = new SectionMap();
// Set<OWLAnnotation> annos = new TreeSet<OWLAnnotation>();
for (OWLAnnotationAssertionAxiom ax : ontology.getAnnotationAssertionAxioms(subject)) {
if (isDisplayed(ax)) {
axioms.add(ax);
sectionMap.add(ax.getAnnotation(), ax);
}
}
writeSection(ANNOTATIONS, sectionMap, ",", true, ontology);
}
}
return axioms;
}
@Override
protected Object getValueKey(Object value) {
OWLAnnotation annotation = null;
if (value instanceof OWLAnnotationAssertionAxiom) {
OWLAnnotationAssertionAxiom axiom = (OWLAnnotationAssertionAxiom) value;
if (axiom.getAnnotations().isEmpty()) {
return axiom.getAnnotation();
} else {
return axiom;
}
} else if (value instanceof AbstractAnnotationsList.AnnotationsListItem) {
annotation = ((AbstractAnnotationsList.AnnotationsListItem) value).getAnnotation();
} else if (value instanceof OWLAnnotation) {
annotation = (OWLAnnotation) value;
}
return annotation;
}
@Override
public void visit(OWLAnnotationAssertionAxiom axiom) {
handleObject(axiom);
axiom.getSubject().accept(this);
axiom.getAnnotation().accept(this);
}