/**
* Procedure required by the CDOInterface. This function is only supposed to be called by the JCFL
* library
*/
public void endObject(String objectType) {
logger.debug("END: " + objectType);
if (objectType.equals("Molecule")) {
eventReader.fireFrameRead();
clearData();
} else if (objectType.equals("Atom")) {
currentMolecule.addAtom(currentAtom);
} else if (objectType.equals("Bond")) {
logger.debug("Bond(" + bond_id + "): " + bond_a1 + ", " + bond_a2 + ", " + bond_order);
if (bond_a1 > currentMolecule.getAtomCount() || bond_a2 > currentMolecule.getAtomCount()) {
logger.error(
"Cannot add bond between at least one non-existant atom: "
+ bond_a1
+ " and "
+ bond_a2);
} else {
IAtom a1 = currentMolecule.getAtom(bond_a1);
IAtom a2 = currentMolecule.getAtom(bond_a2);
IBond b = builder.newBond(a1, a2, bond_order);
if (bond_id != null) b.setID(bond_id);
if (bond_stereo != -99) {
b.setStereo(bond_stereo);
}
currentMolecule.addBond(b);
}
}
}
