public TestSuite createTestSuite() throws Exception {
// Create test suite
TestSuite suite = new TestSuite(N3ParserTestCase.class.getName());
// Add the manifest to a repository and query it
Repository repository = new SailRepository(new MemoryStore());
repository.initialize();
RepositoryConnection con = repository.getConnection();
URL url = url(MANIFEST_URL);
con.add(url, base(MANIFEST_URL), RDFFormat.TURTLE);
// Add all positive parser tests to the test suite
String query =
"SELECT testURI, inputURL, outputURL "
+ "FROM {testURI} rdf:type {n3test:PositiveParserTest}; "
+ " n3test:inputDocument {inputURL}; "
+ " n3test:outputDocument {outputURL} "
+ "USING NAMESPACE n3test = <http://www.w3.org/2004/11/n3test#>";
TupleQueryResult queryResult = con.prepareTupleQuery(QueryLanguage.SERQL, query).evaluate();
while (queryResult.hasNext()) {
BindingSet bindingSet = queryResult.next();
String testURI = bindingSet.getValue("testURI").toString();
String inputURL = bindingSet.getValue("inputURL").toString();
String outputURL = bindingSet.getValue("outputURL").toString();
suite.addTest(new PositiveParserTest(testURI, inputURL, outputURL));
}
queryResult.close();
// Add all negative parser tests to the test suite
query =
"SELECT testURI, inputURL "
+ "FROM {testURI} rdf:type {n3test:NegativeParserTest}; "
+ " n3test:inputDocument {inputURL} "
+ "USING NAMESPACE n3test = <http://www.w3.org/2004/11/n3test#>";
queryResult = con.prepareTupleQuery(QueryLanguage.SERQL, query).evaluate();
while (queryResult.hasNext()) {
BindingSet bindingSet = queryResult.next();
String testURI = bindingSet.getValue("testURI").toString();
String inputURL = bindingSet.getValue("inputURL").toString();
suite.addTest(new NegativeParserTest(testURI, inputURL));
}
queryResult.close();
con.close();
repository.shutDown();
return suite;
}
public void tupleQuery()
throws QueryEvaluationException, RepositoryException, MalformedQueryException {
// /query repo
// con.setNamespace("onto",
// "<http://it.unibz.krdb/obda/ontologies/test/translation/onto2.owl#>");
// System.out.println(con.getNamespaces().next().toString());
String queryString =
"PREFIX : \n<http://it.unibz.krdb/obda/ontologies/test/translation/onto2.owl#>\n "
+ "SELECT ?x ?y WHERE { ?x a :Person. ?x :age ?y } ";
// String queryString =
// "SELECT ?x ?y WHERE { ?x a onto:Person. ?x onto:age ?y } ";
TupleQuery tupleQuery = (con).prepareTupleQuery(QueryLanguage.SPARQL, queryString);
TupleQueryResult result = tupleQuery.evaluate();
System.out.println(result.getBindingNames());
while (result.hasNext()) {
BindingSet bindingSet = result.next();
Value valueOfX = bindingSet.getValue("x");
Literal valueOfY = (Literal) bindingSet.getValue("y");
System.out.println(valueOfX.stringValue() + ", " + valueOfY.floatValue());
}
result.close();
}
public Collection<String> getAllDisjointProperties(String startingProperty)
throws RepositoryException, MalformedQueryException, QueryEvaluationException {
Set<String> allDisjointProperties = new HashSet<>();
RepositoryConnection con = this.repository.getConnection();
try {
TupleQuery allDisjointPropertiesQuery =
con.prepareTupleQuery(
QueryLanguage.SPARQL,
"SELECT ?items "
+ "WHERE { ?y a owl:AllDisjointProperties ."
+ "?y owl:members ?members ."
+ "?members rdf:rest*/rdf:first <"
+ startingProperty
+ "> ."
+ "?members rdf:rest*/rdf:first ?items ."
+ "FILTER (?items != <"
+ startingProperty
+ ">) .}");
TupleQueryResult allDisjointPropertiesResult = allDisjointPropertiesQuery.evaluate();
try {
while (allDisjointPropertiesResult.hasNext()) {
BindingSet bindingSet = allDisjointPropertiesResult.next();
Value name = bindingSet.getValue("items");
allDisjointProperties.add(name.toString());
}
} finally {
allDisjointPropertiesResult.close();
}
} finally {
con.close();
}
return allDisjointProperties;
}
public Collection<String> getIntersectionOf(String startingClass)
throws RepositoryException, MalformedQueryException, QueryEvaluationException {
Set<String> intersectionOfClasses = new HashSet<>();
RepositoryConnection con = this.repository.getConnection();
try {
TupleQuery intersectionOfQuery =
con.prepareTupleQuery(
QueryLanguage.SPARQL,
"SELECT ?c WHERE { ?c owl:intersectionOf ?l . "
+ "?l rdf:rest*/rdf:first <"
+ startingClass
+ "> .}");
TupleQueryResult intersectionOfResult = intersectionOfQuery.evaluate();
try {
while (intersectionOfResult.hasNext()) {
BindingSet bindingSet = intersectionOfResult.next();
Value name = bindingSet.getValue("c");
intersectionOfClasses.add(name.toString());
// System.out.println("intersections Ofs : " + name);
}
} finally {
intersectionOfResult.close();
}
} finally {
con.close();
}
return intersectionOfClasses;
}
private void cleanup(TupleQueryResult result) {
try {
if (result != null) {
result.close();
}
} catch (Exception ex) {
throw new IllegalStateException(ex);
}
}
public List<String> getValuesFor(URI context, URI predicate) throws RepositoryException {
RepositoryConnection con = repository.getConnection();
List<String> values = new ArrayList<String>();
try {
TupleQuery query =
con.prepareTupleQuery(
QueryLanguage.SPARQL,
"SELECT distinct ?v WHERE {GRAPH <" + context + "> {?d <" + predicate + "> ?v}}");
TupleQueryResult statements = query.evaluate();
while (statements.hasNext())
values.add(statements.next().getBinding("v").getValue().stringValue());
statements.close();
} finally {
con.close();
return values;
}
}
@Override
public int runQuery(Query q, int run) throws Exception {
TupleQuery query = conn.prepareTupleQuery(QueryLanguage.SPARQL, q.getQuery());
TupleQueryResult res = (TupleQueryResult) query.evaluate();
int resCounter = 0;
try {
while (res.hasNext()) {
if (isInterrupted()) throw new QueryEvaluationException("Thread has been interrupted.");
BindingSet bindings = res.next();
resCounter++;
earlyResults.handleResult(bindings, resCounter);
}
} finally {
res.close();
}
return resCounter;
}
@Override
public List<SesameMatch> runQuery(final Query query, final String queryDefinition)
throws RepositoryException, MalformedQueryException, QueryEvaluationException {
final List<SesameMatch> results = new ArrayList<>();
TupleQueryResult queryResults;
tupleQuery = connection.prepareTupleQuery(QueryLanguage.SPARQL, queryDefinition);
queryResults = tupleQuery.evaluate();
try {
while (queryResults.hasNext()) {
final BindingSet bs = queryResults.next();
final SesameMatch match = SesameMatch.createMatch(query, bs);
results.add(match);
}
} finally {
queryResults.close();
}
return results;
}
protected static String getManifestName(
Repository manifestRep, RepositoryConnection con, String manifestFileURL)
throws QueryEvaluationException, RepositoryException, MalformedQueryException {
// Try to extract suite name from manifest file
TupleQuery manifestNameQuery =
con.prepareTupleQuery(
QueryLanguage.SERQL,
"SELECT ManifestName FROM {ManifestURL} rdfs:label {ManifestName}");
manifestNameQuery.setBinding(
"ManifestURL", manifestRep.getValueFactory().createURI(manifestFileURL));
TupleQueryResult manifestNames = manifestNameQuery.evaluate();
try {
if (manifestNames.hasNext()) {
return manifestNames.next().getValue("ManifestName").stringValue();
}
} finally {
manifestNames.close();
}
// Derive name from manifest URL
int lastSlashIdx = manifestFileURL.lastIndexOf('/');
int secLastSlashIdx = manifestFileURL.lastIndexOf('/', lastSlashIdx - 1);
return manifestFileURL.substring(secLastSlashIdx + 1, lastSlashIdx);
}
// sparql
public void sparql() throws IOException, RepositoryException, QueryEvaluationException {
// find all expired data to avoid them participating the query:
this.toDeleteCounter = 0;
this.dropQueryString = "";
ArrayList<GraphIdCounterPair> expiredData = new ArrayList<GraphIdCounterPair>();
LocalTime evictionTime = LocalTime.now();
for (GraphIdCounterPair x : this.cacheContentOfGraphIds) {
System.out.print(
this.evictCounter
+ ", "
+ this.size
+ ", "
+ this.evictAmount
+ ", "
+ x.graphId
+ ", "
+ x.arrivalTime
+ ", "
+ x.expirationTime);
if (x.expirationTime.isBefore(evictionTime)) {
expiredData.add(x);
dropQueryString += "drop graph <" + x.graphId + ">;";
System.out.println(", expired");
++toDeleteCounter;
} else {
System.out.println();
}
}
System.out.println("[INFO] " + expiredData.size() + " data expired!");
if (!expiredData.isEmpty()) {
// delete expired data from the cache
for (GraphIdCounterPair x : expiredData) {
this.cacheContentOfGraphIds.remove(x);
}
// delete the expired data from the database
QueryExecution qe =
AGQueryExecutionFactory.create(AGQueryFactory.create(dropQueryString), model);
qe.execAsk();
qe.close();
}
// after deleting expired data, load the cache again
this.streamEmulation();
System.out.println(this.reasoner.getEntailmentRegime());
this.infModel = new AGInfModel(this.reasoner, this.model);
String queryString =
"select distinct ?s "
+ "where { ?s <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>"
+ "<http://swat.cse.lehigh.edu/onto/univ-bench.owl#Professor>.}";
AGRepositoryConnection conn = this.client.getAGConn();
TupleQuery tupleQuery = conn.prepareTupleQuery(QueryLanguage.SPARQL, queryString);
tupleQuery.setIncludeInferred(true);
long sparqlStartTime = System.currentTimeMillis();
TupleQueryResult resultSet = tupleQuery.evaluate();
long sparqlEndTime = System.currentTimeMillis();
this.aveSparql += (sparqlEndTime - sparqlStartTime);
ArrayList<String> results = new ArrayList<String>();
while (resultSet.hasNext()) {
String result = resultSet.next().toString();
System.out.println("result");
int length = result.length();
results.add(result.substring(3, length - 1));
}
resultSet.close();
this.fMeasureBench(results);
this.infModel.close();
}
public void test_query() throws Exception {
final BigdataSail sail = getSail();
try {
sail.initialize();
if (!((BigdataSail) sail).database.getStatementIdentifiers()) {
log.warn("Statement identifiers are not enabled");
return;
}
/*
* Load data into the sail.
*/
{
final DataLoader dataLoader = sail.database.getDataLoader();
dataLoader.loadData(
"/com/bigdata/rdf/sail/provenance01.ttlx",
"" /*baseURL*/,
ServiceProviderHook.TURTLE_RDR);
}
/*
* Serialize as RDF/XML.
*
* Note: This is just for debugging.
*/
if (log.isInfoEnabled()) {
final BigdataStatementIterator itr = sail.database.getStatements(null, null, null);
final String rdfXml;
try {
final Writer w = new StringWriter();
// final RDFXMLWriter rdfWriter = new RDFXMLWriter(w);
final RDFWriterFactory writerFactory =
RDFWriterRegistry.getInstance().get(RDFFormat.RDFXML);
assertNotNull(writerFactory);
final RDFWriter rdfWriter = writerFactory.getWriter(w);
rdfWriter.startRDF();
while (itr.hasNext()) {
final BigdataStatementImpl stmt = (BigdataStatementImpl) itr.next();
// only write the explicit statements.
if (!stmt.isExplicit()) continue;
rdfWriter.handleStatement(stmt);
}
rdfWriter.endRDF();
rdfXml = w.toString();
} finally {
itr.close();
}
// write the rdf/xml
log.info(rdfXml);
}
final SailConnection conn = sail.getConnection();
try {
final URI y = new URIImpl("http://www.foo.org/y");
final URI B = new URIImpl("http://www.foo.org/B");
final URI dcCreator = new URIImpl("http://purl.org/dc/terms/creator");
final Literal bryan = new LiteralImpl("bryan");
final Literal mike = new LiteralImpl("mike");
/*
* This is a hand-coded query.
*
* Note: When statement identifiers are enabled, the only way to
* bind the context position is to already have a statement on hand -
* there is no index which can be used to look up a statement by its
* context and the context is always a blank node.
*/
// final TupleExpr tupleExpr =
// new Projection(
// new Join(//
// new StatementPattern(//
// new Var("X", y),//
// new Var("1", RDF.TYPE),//
// new Var("2", B),//
// new Var("SID")),// unbound.
// new StatementPattern(//
// new Var("SID"),//
// new Var("3", dcCreator),//
// new Var("Y"))),
// new ProjectionElemList(new ProjectionElem[] { new ProjectionElem( "Y"
// )}));
// final String q = "select ?Y where { ?SID <"+dcCreator+"> ?Y . graph ?SID {
// <"+y+"> <"+RDF.TYPE+"> <"+B+"> . } }";
final String q =
"select ?Y where { <<<"
+ y
+ "> <"
+ RDF.TYPE
+ "> <"
+ B
+ ">>> <"
+ dcCreator
+ "> ?Y . }";
/*
* Create a data set consisting of the contexts to be queried.
*
* Note: a [null] DataSet will cause context to be ignored when the
* query is processed.
*/
// final DatasetImpl dataSet = null; //new DatasetImpl();
//
// final BindingSet bindingSet = new QueryBindingSet();
//
// final CloseableIteration<? extends BindingSet, QueryEvaluationException> itr =
// conn
// .evaluate(tupleExpr, dataSet, bindingSet, true/* includeInferred */);
final TupleQuery tq =
new BigdataSailRepository(sail)
.getReadOnlyConnection()
.prepareTupleQuery(QueryLanguage.SPARQL, q);
final TupleQueryResult itr = tq.evaluate();
if (log.isInfoEnabled()) log.info("Verifying query.");
/*
* These are the expected results for the query (the bindings for Y).
*/
final Set<Value> expected = new HashSet<Value>();
expected.add(bryan);
expected.add(mike);
/*
* Verify that the query results is the correct solutions.
*/
final int nresults = expected.size();
try {
int i = 0;
while (itr.hasNext()) {
final BindingSet solution = itr.next();
if (log.isInfoEnabled()) log.info("solution[" + i + "] : " + solution);
final Value actual = solution.getValue("Y");
assertTrue("Not expecting Y=" + actual, expected.remove(actual));
i++;
}
assertEquals("#results", nresults, i);
} finally {
itr.close();
}
} finally {
conn.close();
}
} finally {
sail.__tearDownUnitTest();
}
}
public static TestSuite suite(String manifestFileURL, Factory factory, boolean approvedOnly)
throws Exception {
logger.info("Building test suite for {}", manifestFileURL);
TestSuite suite = new TestSuite(factory.getClass().getName());
// Read manifest and create declared test cases
Repository manifestRep = new SailRepository(new MemoryStore());
manifestRep.initialize();
RepositoryConnection con = manifestRep.getConnection();
ManifestTest.addTurtle(con, new URL(manifestFileURL), manifestFileURL);
suite.setName(getManifestName(manifestRep, con, manifestFileURL));
// Extract test case information from the manifest file. Note that we
// only
// select those test cases that are mentioned in the list.
StringBuilder query = new StringBuilder(512);
query.append(
" SELECT DISTINCT testURI, testName, resultFile, action, queryFile, defaultGraph, ordered ");
query.append(" FROM {} rdf:first {testURI} ");
if (approvedOnly) {
query.append(" dawgt:approval {dawgt:Approved}; ");
}
query.append(" mf:name {testName}; ");
query.append(" mf:result {resultFile}; ");
query.append(" [ mf:checkOrder {ordered} ]; ");
query.append(" [ mf:requires {Requirement} ];");
query.append(" mf:action {action} qt:query {queryFile}; ");
query.append(" [qt:data {defaultGraph}]; ");
query.append(" [sd:entailmentRegime {Regime} ]");
// skip tests involving CSV result files, these are not query tests
query.append(" WHERE NOT resultFile LIKE \"*.csv\" ");
// skip tests involving JSON, sesame currently does not have a
// SPARQL/JSON
// parser.
query.append(" AND NOT resultFile LIKE \"*.srj\" ");
// skip tests involving entailment regimes
query.append(" AND NOT BOUND(Regime) ");
// skip test involving basic federation, these are tested separately.
query.append(" AND (NOT BOUND(Requirement) OR (Requirement != mf:BasicFederation)) ");
query.append(" USING NAMESPACE ");
query.append(" mf = <http://www.w3.org/2001/sw/DataAccess/tests/test-manifest#>, ");
query.append(" dawgt = <http://www.w3.org/2001/sw/DataAccess/tests/test-dawg#>, ");
query.append(" qt = <http://www.w3.org/2001/sw/DataAccess/tests/test-query#>, ");
query.append(" sd = <http://www.w3.org/ns/sparql-service-description#>, ");
query.append(" ent = <http://www.w3.org/ns/entailment/> ");
TupleQuery testCaseQuery = con.prepareTupleQuery(QueryLanguage.SERQL, query.toString());
query.setLength(0);
query.append(" SELECT graph ");
query.append(" FROM {action} qt:graphData {graph} ");
query.append(" USING NAMESPACE ");
query.append(" qt = <http://www.w3.org/2001/sw/DataAccess/tests/test-query#>");
TupleQuery namedGraphsQuery = con.prepareTupleQuery(QueryLanguage.SERQL, query.toString());
query.setLength(0);
query.append("SELECT 1 ");
query.append(" FROM {testURI} mf:resultCardinality {mf:LaxCardinality}");
query.append(
" USING NAMESPACE mf = <http://www.w3.org/2001/sw/DataAccess/tests/test-manifest#>");
TupleQuery laxCardinalityQuery = con.prepareTupleQuery(QueryLanguage.SERQL, query.toString());
logger.debug("evaluating query..");
TupleQueryResult testCases = testCaseQuery.evaluate();
while (testCases.hasNext()) {
BindingSet bindingSet = testCases.next();
URI testURI = (URI) bindingSet.getValue("testURI");
String testName = bindingSet.getValue("testName").toString();
String resultFile = bindingSet.getValue("resultFile").toString();
String queryFile = bindingSet.getValue("queryFile").toString();
URI defaultGraphURI = (URI) bindingSet.getValue("defaultGraph");
Value action = bindingSet.getValue("action");
Value ordered = bindingSet.getValue("ordered");
logger.debug("found test case : {}", testName);
// Query named graphs
namedGraphsQuery.setBinding("action", action);
TupleQueryResult namedGraphs = namedGraphsQuery.evaluate();
DatasetImpl dataset = null;
if (defaultGraphURI != null || namedGraphs.hasNext()) {
dataset = new DatasetImpl();
if (defaultGraphURI != null) {
dataset.addDefaultGraph(defaultGraphURI);
}
while (namedGraphs.hasNext()) {
BindingSet graphBindings = namedGraphs.next();
URI namedGraphURI = (URI) graphBindings.getValue("graph");
logger.debug(" adding named graph : {}", namedGraphURI);
dataset.addNamedGraph(namedGraphURI);
}
}
// Check for lax-cardinality conditions
boolean laxCardinality = false;
laxCardinalityQuery.setBinding("testURI", testURI);
TupleQueryResult laxCardinalityResult = laxCardinalityQuery.evaluate();
try {
laxCardinality = laxCardinalityResult.hasNext();
} finally {
laxCardinalityResult.close();
}
// if this is enabled, Sesame passes all tests, showing that the
// only
// difference is the semantics of arbitrary-length
// paths
/*
* if (!laxCardinality) { // property-path tests always with lax
* cardinality because Sesame filters out duplicates by design if
* (testURI.stringValue().contains("property-path")) {
* laxCardinality = true; } }
*/
// check if we should test for query result ordering
boolean checkOrder = false;
if (ordered != null) {
checkOrder = Boolean.parseBoolean(ordered.stringValue());
}
SPARQLQueryTest test =
factory.createSPARQLQueryTest(
testURI.toString(),
testName,
queryFile,
resultFile,
dataset,
laxCardinality,
checkOrder);
if (test != null) {
suite.addTest(test);
}
}
testCases.close();
con.close();
manifestRep.shutDown();
logger.info("Created test suite with " + suite.countTestCases() + " test cases.");
return suite;
}