public DataObject simplifyReferenceTerm(ConceptReferenceTerm term) throws Exception {
List<Object> propertyNamesAndValues = new ArrayList<Object>();
if (term == null
|| StringUtils.isBlank(term.getCode())
|| StringUtils.isEmpty(term.getCode())) {
propertyNamesAndValues.add("termCode");
propertyNamesAndValues.add("");
propertyNamesAndValues.add("termId");
propertyNamesAndValues.add("");
propertyNamesAndValues.add("termName");
propertyNamesAndValues.add("No Snomed CT Reference Terms Mapped To This Concept");
} else {
propertyNamesAndValues.add("termCode");
propertyNamesAndValues.add((term.getCode()));
propertyNamesAndValues.add("termId");
propertyNamesAndValues.add((term.getId()));
if (term.getName() != null) {
propertyNamesAndValues.add("termName");
propertyNamesAndValues.add(term.getName());
}
}
DataObject dataObject = DataObject.create(propertyNamesAndValues);
return dataObject;
}
private void addTRCodingsForReferenceTerms(
Concept concept,
IdMappingsRepository idMappingsRepository,
CodeableConceptDt codeableConcept,
ConceptMap mapping) {
ConceptReferenceTerm conceptReferenceTerm = mapping.getConceptReferenceTerm();
IdMapping idMapping = idMappingsRepository.findByInternalId(conceptReferenceTerm.getUuid());
if (idMapping != null) {
addFHIRCoding(
codeableConcept,
conceptReferenceTerm.getCode(),
idMapping.getUri(),
concept.getName().getName());
}
}
private HashMap<ConceptReferenceTerm, List<Concept>> getAssociatedConceptsToRefTerms(
Set<ConceptReferenceTerm> terms) {
ConceptService conceptService = (ConceptService) Context.getService(ConceptService.class);
HashMap<ConceptReferenceTerm, List<Concept>> hmconceptsToRefTerms =
new HashMap<ConceptReferenceTerm, List<Concept>>();
for (ConceptReferenceTerm refTerm : terms) {
List<Concept> mappedConcept =
conceptService.getConceptsByMapping(
refTerm.getCode(), refTerm.getConceptSource().getName(), false);
hmconceptsToRefTerms.put(refTerm, mappedConcept);
}
return hmconceptsToRefTerms;
}