/** Launches a dialog to select the file to attach to the <code>DataObject</code>. */
private void selectFileToAttach() {
JFrame owner = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
owner, FileChooser.LOAD, "Choose File", "Select the file to attach.", filters, true);
chooser.setMultiSelectionEnabled(true);
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.ATTACHMENT_48));
chooser.setApproveButtonText("Attach");
chooser.addPropertyChangeListener(FileChooser.APPROVE_SELECTION_PROPERTY, this);
UIUtilities.centerAndShow(chooser);
}
/**
* Opens a dialog box for users to choose a local file.
*
* @see ActionListener#actionPerformed(ActionEvent)
*/
public void actionPerformed(ActionEvent e) {
List<FileFilter> filters;
filters = new ArrayList<FileFilter>();
filters.add(new EditorFileFilter());
FileChooser chooser =
new FileChooser(
null, FileChooser.LOAD, "Open File", "Choose a file to open in the Editor", filters);
chooser.addPropertyChangeListener(
FileChooser.APPROVE_SELECTION_PROPERTY, ProtocolLinkEditor.this);
UIUtilities.centerAndShow(chooser);
}
/** Brings up the folder chooser. */
private void download() {
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f,
FileChooser.FOLDER_CHOOSER,
"Download",
"Select where to download the file.",
null,
true);
chooser.setSelectedFileFull(view.getRefObjectName());
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.DOWNLOAD_48));
chooser.setApproveButtonText("Download");
chooser.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
String path = (String) evt.getNewValue();
if (path == null) {
path = UIUtilities.getDefaultFolderAsString();
}
if (!path.endsWith(File.separator)) path += File.separator;
model.download(new File(path));
}
}
});
chooser.centerDialog();
}
/** Brings up a dialog so that the user can select where to download the file. */
private void download() {
String name = null;
if (data instanceof FileAnnotationData) {
name = ((FileAnnotationData) data).getFileName();
}
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f, FileChooser.SAVE, "Download", "Select where to download the files.", null, true);
if (name != null && name.trim().length() > 0) chooser.setSelectedFileFull(name);
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.DOWNLOAD_48));
chooser.setApproveButtonText("Download");
chooser.addPropertyChangeListener(this);
chooser.centerDialog();
}
/** Brings up the folder chooser to select where to save the files. */
private void saveAsJPEG() {
JFrame f = MetadataViewerAgent.getRegistry().getTaskBar().getFrame();
FileChooser chooser =
new FileChooser(
f,
FileChooser.FOLDER_CHOOSER,
"Save As",
"Select where to save locally the images as JPEG.",
saveAsFilters);
String s = UIUtilities.removeFileExtension(view.getRefObjectName());
if (s != null && s.trim().length() > 0) chooser.setSelectedFile(s);
chooser.setApproveButtonText("Save");
IconManager icons = IconManager.getInstance();
chooser.setTitleIcon(icons.getIcon(IconManager.SAVE_AS_48));
chooser.addPropertyChangeListener(
new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
String name = evt.getPropertyName();
if (FileChooser.APPROVE_SELECTION_PROPERTY.equals(name)) {
// File[] files = (File[]) evt.getNewValue();
String value = (String) evt.getNewValue();
File folder = null; // files[0];
if (value == null || value.trim().length() == 0)
folder = UIUtilities.getDefaultFolder();
else folder = new File(value);
Object src = evt.getSource();
if (src instanceof FileChooser) {
((FileChooser) src).setVisible(false);
((FileChooser) src).dispose();
}
model.saveAs(folder);
}
}
});
chooser.centerDialog();
}
/** Save the results to an Excel File. */
private void saveResults() {
channelsSelectionForm = new ChannelSelectionForm(channelName);
FileChooser chooser = view.createSaveToExcelChooser();
chooser.addComponentToControls(channelsSelectionForm);
int results = chooser.showDialog();
if (results != JFileChooser.APPROVE_OPTION) return;
File file = chooser.getFormattedSelectedFile();
// TODO: Modify that code when we have various writer.
if (!file.getAbsolutePath().endsWith(ExcelFilter.EXCEL)) {
String fileName = file.getAbsolutePath() + "." + ExcelFilter.EXCEL;
file = new File(fileName);
}
List<Integer> channels = channelsSelectionForm.getUserSelection();
if (channels == null || channels.size() == 0) {
UserNotifier un = MeasurementAgent.getRegistry().getUserNotifier();
un.notifyInfo("Save Results", " Please select at least a channel.");
view.setStatus("No Channel selected to output.");
return;
}
try {
ExcelWriter writer = new ExcelWriter(file.getAbsolutePath());
writer.openFile();
writer.createSheet("Channel Summary");
Iterator<Coord3D> coordMapIterator = shapeMap.keySet().iterator();
Coord3D currentCoord;
int n = channels.size();
Integer channel;
if (channelSummarySelected(channels)) outputSummary(writer, shapeMap);
BufferedImage originalImage = model.getRenderedImage();
if (originalImage != null) {
BufferedImage image = Factory.copyBufferedImage(originalImage);
// Add the ROI for the current plane to the image.
// TODO: Need to check that.
model.setAttributes(MeasurementAttributes.SHOWID, true);
model.getDrawingView().print(image.getGraphics());
model.setAttributes(MeasurementAttributes.SHOWID, false);
try {
writer.addImageToWorkbook("ThumbnailImage", image);
} catch (Exception e) {
// TODO
}
int col = writer.getMaxColumn(0);
writer.writeImage(0, col + 1, 256, 256, "ThumbnailImage");
}
if (channelSummarySelected(channels) && channels.size() != 1)
while (coordMapIterator.hasNext()) {
currentCoord = coordMapIterator.next();
for (int i = 0; i < n; i++) {
channel = channels.get(i);
if (channel == ChannelSelectionForm.SUMMARYVALUE) continue;
if (!nameMap.containsKey(channelName.get(channel))) continue;
int rowIndex = 0;
writer.createSheet("Channel Number " + channelName.get(channel));
writeHeader(writer, rowIndex, currentCoord);
channel = nameMap.get(channelName.get(channel));
writeData(writer, rowIndex, currentCoord, channel.intValue());
}
}
writer.close();
} catch (Exception e) {
Logger logger = MeasurementAgent.getRegistry().getLogger();
logger.error(this, "Cannot save ROI results: " + e.toString());
UserNotifier un = MeasurementAgent.getRegistry().getUserNotifier();
String message = "An error occurred while trying to" + " save the data.\nPlease try again.";
if (e instanceof NumberFormatException) {
message =
"We only support the British/American style of "
+ "representing numbers,\nusing a decimal point rather "
+ "than a comma.";
}
un.notifyInfo("Save Results", message);
return;
}
Registry reg = MeasurementAgent.getRegistry();
UserNotifier un = reg.getUserNotifier();
un.notifyInfo("Save ROI results", "The ROI results have been " + "successfully saved.");
}