/** {@inheritDoc} */
@Override
public Dialect createCustomDialect(
KamInfo kamInfo,
List<Namespace> geneNamespaces,
List<Namespace> bpNamespaces,
List<Namespace> chemicalNamespaces,
BELSyntax form,
boolean removeNamespacePrefix)
throws KamStoreException {
// cache all namespaces of the kam by prefix
Map<String, Namespace> kamNamespaces = new HashMap<String, Namespace>();
Map<String, NamespaceDomain> domains = new HashMap<String, NamespaceDomain>();
for (org.openbel.framework.internal.KAMStoreDaoImpl.Namespace ns :
kamStore.getNamespaces(kamInfo)) {
Namespace cns = new Namespace(ns.getPrefix(), ns.getResourceLocation());
kamNamespaces.put(cns.getPrefix(), cns);
NamespaceHeader hdr = namespaceResourceService.getHeader(cns.getResourceLocation());
domains.put(
cns.getPrefix(),
NamespaceDomain.forDomainString(hdr.getNamespaceBlock().getDomainString()));
}
CustomDialect pd = new CustomDialect(kamStore);
pd.setKamNamespaces(kamNamespaces);
pd.setNsDomains(domains);
pd.setGeneNamespaces(geneNamespaces);
pd.setBpNamespaces(bpNamespaces);
pd.setChemNamespaces(chemicalNamespaces);
if (BELSyntax.LONG_FORM.equals(form)) {
pd.setDisplayLongForm(true);
}
pd.setRemoveNamespacePrefix(removeNamespacePrefix);
pd.initialize();
return pd;
}
static {
for (NamespaceDomain nd : values()) {
DSMAP.put(nd.getDomainString(), nd);
}
}
