/** This is where the user comes back to at the end of the OpenID redirect ping-pong. */
public HttpResponse doFinishLogin(StaplerRequest request) throws IOException {
String code = request.getParameter("code");
if (code == null || code.trim().length() == 0) {
Log.info("doFinishLogin: missing code.");
return HttpResponses.redirectToContextRoot();
}
Log.info("test");
HttpPost httpost =
new HttpPost(
githubUri
+ "/login/oauth/access_token?"
+ "client_id="
+ clientID
+ "&"
+ "client_secret="
+ clientSecret
+ "&"
+ "code="
+ code);
DefaultHttpClient httpclient = new DefaultHttpClient();
org.apache.http.HttpResponse response = httpclient.execute(httpost);
HttpEntity entity = response.getEntity();
String content = EntityUtils.toString(entity);
// When HttpClient instance is no longer needed,
// shut down the connection manager to ensure
// immediate deallocation of all system resources
httpclient.getConnectionManager().shutdown();
String accessToken = extractToken(content);
if (accessToken != null && accessToken.trim().length() > 0) {
String githubServer = githubUri.replaceFirst("http.*\\/\\/", "");
// only set the access token if it exists.
GithubAuthenticationToken auth = new GithubAuthenticationToken(accessToken, githubServer);
SecurityContextHolder.getContext().setAuthentication(auth);
GHUser self = auth.getGitHub().getMyself();
User u = User.current();
u.setFullName(self.getName());
u.addProperty(new Mailer.UserProperty(self.getEmail()));
} else {
Log.info("Github did not return an access token.");
}
String referer = (String) request.getSession().getAttribute(REFERER_ATTRIBUTE);
if (referer != null) return HttpResponses.redirectTo(referer);
return HttpResponses
.redirectToContextRoot(); // referer should be always there, but be defensive
}
public List<Candidate> getCandidatesForResponse(MedicFormResponse response) {
Log.info("Attempting to map response");
// get the CHW that submitted the form
CommunityHealthWorker chw = (CommunityHealthWorker) response.getSubmitter();
// get the list of patients that the CHW cares for
ArrayList<Patient> patients = (ArrayList<Patient>) patientDao.getPatientsForCHW(chw);
ArrayList<Candidate> candidates = new ArrayList<Candidate>();
// iterate through all fields on the form, seeing if they are mapped to patient identifying
// fields
// e.g. Birthdate, Name, and Patient ID
for (Patient patient : patients) {
candidates.add(new Candidate(patient));
}
List<MedicFormFieldResponse> responses = response.getResponses();
try {
responses.get(0).getDateSubmitted();
} catch (Exception e) {
responses = formFieldResponseDao.getResponsesForFormResponse(response);
}
for (MedicFormFieldResponse fieldResponse : responses) {
// if it is mapped to a namefield, score it as a name
if (fieldResponse.getField().getMapping() == PatientFieldMapping.NAMEFIELD) {
for (Candidate c : candidates) {
c.setNameScore(
getNameDistance(c.getName().toLowerCase(), fieldResponse.getValue().toLowerCase()));
}
// if it is mapped to an id field, score it as an ID
} else if (fieldResponse.getField().getMapping() == PatientFieldMapping.IDFIELD) {
for (Candidate c : candidates) {
c.setIdScore(getEditDistance(c.getStringID(), fieldResponse.getValue()));
}
// if it is mapped as a bday field, score it as a bday
} else if (fieldResponse.getField().getMapping() == PatientFieldMapping.BIRTHDATEFIELD) {
for (Candidate c : candidates) {
if (fieldResponse.getValue().length() <= 8) {
c.setBirthdateScore(
getEditDistance(
shortFormatter.format(c.getPatient().getBirthdate()),
fieldResponse.getValue()));
} else {
c.setBirthdateScore(
getEditDistance(
longFormatter.format(c.getPatient().getBirthdate()), fieldResponse.getValue()));
}
}
}
}
Collections.sort(candidates);
return candidates.subList(0, 5);
}