/** Uses the classes from the DB to write the RDF files based on those. */
public static void writeSemanticModelFiles() {
logger.debug("Writing the context model to a file");
// TODO: Complement the model with the other required entities
OntModel usersModel = writeUserEntries();
OntModel projectsModel = writeProjectEntries();
OntModel metadataModel = writeMetaDataModelEntries();
// uqModel.write(System.out, "RDF/XML");
// RDFDataMgr.write(System.out, uqModel, RDFFormat.RDFXML_PRETTY);
// Write the individual models to a single file
// holding all the triples
final OntModel combined = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
for (final OntModel part : new OntModel[] {usersModel, projectsModel, metadataModel}) {
combined.add(part);
}
try {
String dataDir = UQasarUtil.getDataDirPath();
// TODO: Find out why this does not work in Linux
// String modelPath = "file:///" + dataDir + ONTOLOGYFILE;
String modelPath = dataDir + ONTOLOGYFILE;
combined.write(new FileOutputStream(modelPath, false));
logger.debug("Context Model written to file " + modelPath);
UQasarUtil.setUqModel(combined);
} catch (Exception e) {
e.printStackTrace();
}
}
@Override
public void doSearch() {
CriteriaBuilder builder = em.getCriteriaBuilder();
CriteriaQuery<QuestionType> cquery = builder.createQuery(QuestionType.class);
Root<QuestionType> rqt = cquery.from(QuestionType.class);
cquery
.select(rqt)
.where(
builder.like(
builder.lower(rqt.get(QuestionType_.name)), searchCriteria.getSearchPattern()));
List<QuestionType> results =
em.createQuery(cquery)
.setMaxResults(searchCriteria.getFetchSize())
.setFirstResult(searchCriteria.getFetchOffset())
.getResultList();
nextPageAvailable = results.size() > searchCriteria.getPageSize();
if (nextPageAvailable) {
// NOTE create new ArrayList since subList creates unserializable list
questionTypes = new ArrayList<QuestionType>(results.subList(0, searchCriteria.getPageSize()));
} else {
questionTypes = results;
}
log.info(
messageBuilder
.get()
.text("Found {0} hotel(s) matching search term [ {1} ] (limit {2})")
.textParams(
questionTypes.size(), searchCriteria.getQuery(), searchCriteria.getPageSize())
.build()
.getText());
}
/** Test a null formula */
@Test
public void testNullFormula() {
logger.info("Test null Formula");
String formula = null;
Object resObject = Formula.evalFormula(formula);
Assert.assertNull(resObject);
}
/**
* Takes care of computing the tree values (update metrics and compute QO/QI values based on that)
* starting from the root node.
*
* @param projectRoot Node
*/
public static void updateTreeWithParticularNode(TreeNode projectRoot, TreeNode projectTreeNode) {
// Create a timestamp at the start of the tree update so that
// all the updated entities have the same value for the date.
setLatestTreeUpdateDate(new Date());
logger.info("Updating the QA Project tree...");
postorderWithParticularNode(projectRoot, projectTreeNode);
}
public class FormulaTest {
private static Logger logger = Logger.getLogger(FormulaTest.class);
/** Test evaluation of a valid formula string. */
@Test
public void testEvalFormulaStr() {
logger.info("Test eval formula String");
Double expected = 15.0;
String evalStr = "5*3";
Object resObject = Formula.evalFormulaStr(evalStr);
Assert.assertNotNull(resObject);
Double result = (Double) resObject;
Assert.assertEquals(expected, result);
}
/** Test a null formula */
@Test
public void testNullFormula() {
logger.info("Test null Formula");
String formula = null;
Object resObject = Formula.evalFormula(formula);
Assert.assertNull(resObject);
}
/** Test an invalid formula; should return null value */
public void testInvalidFormula() {
logger.info("Test invalid Formula");
String formula = "ax";
Object resObject = Formula.evalFormula(formula);
Assert.assertNull(resObject);
}
}
/** Read the RDF model from files. */
public static void readSemanticModelFiles() {
logger.debug("Reading the model from a file");
// Read the model to an existing model
String dataDir = UQasarUtil.getDataDirPath();
String modelPath = "file:///" + dataDir + ONTOLOGYFILE;
// String modelPath =
// "file:///C:/nyrhinen/Programme/jboss-as-7.1.1.Final/standalone/data/uq-ontology-model.rdf";
OntModel model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
RDFDataMgr.read(model, modelPath);
// Test output to standard output
// RDFDataMgr.write(System.out, uqModel, RDFFormat.RDFXML_PRETTY);
logger.debug("Model read from file " + modelPath);
UQasarUtil.setUqModel(model);
System.out.println("Reading done.");
}
/** * Provide CDI injection to SystemEventListener artifacts by delegating through this class. * * @author <a href="mailto:[email protected]>Lincoln Baxter, III</a> */ public class DelegatingSystemEventListener extends AbstractListener<SystemEventListener> implements SystemEventListener { private final transient Logger log = Logger.getLogger(DelegatingSystemEventListener.class); @Override public boolean isListenerForSource(final Object source) { return true; } @Override public void processEvent(final SystemEvent event) throws AbortProcessingException { if (event instanceof PreDestroyApplicationEvent && !isBeanManagerAvailable()) { log.info( "BeanManager no longer available; Cannot notify CDI-managed listeners of " + PreDestroyApplicationEvent.class.getSimpleName()); return; } for (SystemEventListener l : getEventListeners()) { if (l.isListenerForSource(event.getSource())) { l.processEvent(event); } } } @SuppressWarnings("unchecked") private List<SystemEventListener> getEventListeners() { return getListeners(SystemEventBridge.class); } }
private DataView<LdapUser> newGroupMembersListView(LdapGroup group) {
List<LdapUser> users;
try {
users = group.getMembers();
} catch (NamingException e) {
logger.warn(e.getMessage(), e);
users = new ArrayList<>(0);
}
DataView<LdapUser> members =
new DataView<LdapUser>("membersList", new LdapGroupUsersProvider(users)) {
@Override
protected void populateItem(Item<LdapUser> item) {
LdapUser user = item.getModelObject();
WebMarkupContainer container = new WebMarkupContainer("member");
ExternalLink mail =
new ExternalLink(
"mail", Model.of("mailto:" + user.getMail()), new PropertyModel(user, "mail"));
Label userName = new Label("username", new PropertyModel(user, "userName"));
final String fullName = user.getFullName();
Label fullNameLabel = new Label("fullname", Model.of(fullName));
fullNameLabel.setVisible(fullName != null);
container.add(mail);
container.add(userName);
container.add(fullNameLabel);
item.add(container);
}
};
members.setOutputMarkupId(true);
return members;
}
@Deployment
public static JavaArchive createDefaultArchive() {
JavaArchive archive =
SeamCronSchedulingTCKTestLong.createSchedulingTckTestArchive()
.addPackages(true, QuartzScheduleProvider.class.getPackage());
log.debug(archive.toString(true));
return archive;
}
/**
* Handles the exception thrown at the end of a conversation redirecting the flow to a pretty page
* instead of printing a stacktrace on the screen.
*
* @param event
* @param log
*/
public void conversationEndedExceptionHandler(
@Handles CaughtException<NonexistentConversationException> event, Logger log) {
log.info("Conversation ended: " + event.getException().getMessage());
try {
facesContext.getExternalContext().redirect("conversation_ended");
} catch (IOException e) {
e.printStackTrace();
}
}
@End
public String confirmOrder() {
order.setCreationDate(new Date());
for (Pizza pizza : order.getPizzas()) em.persist(pizza);
em.persist(order);
log.infov(
"Order {0} placed by {1} with {2} pizzas",
order.getId(), user.getUsername(), order.getPizzas().size());
return "completed";
}
/**
* Construct a formula string to be evaluated.
*
* @param varsAndOpers
* @return
*/
public static String constructFormula(List<Object> varsAndOpers) {
String formula = "";
for (Object object : varsAndOpers) {
formula += object;
}
logger.info("Constructed formula to be evaluated: " + formula);
return formula;
}
// Injecting HttpServletRequest instead of HttpSession as the latter conflicts with a Weld bean on
// GlassFish 3.0.1
public void onLogin(@Observes @Authenticated UserLogin user, HttpServletRequest request) {
currentUser = user;
log.infov(
"set current UserLogin,userId={0},loginName={1},userName={2}",
currentUser.getUserId(), currentUser.getLoginName(), currentUser.getUserName());
checkPermission(currentUser.getUserId());
// reward authenticated users with a longer session
// default is kept short to prevent search engines from driving up # of sessions
// request.getSession().setMaxInactiveInterval(3600);
}
/** Test evaluation of a valid formula string. */
@Test
public void testEvalFormulaStr() {
logger.info("Test eval formula String");
Double expected = 15.0;
String evalStr = "5*3";
Object resObject = Formula.evalFormulaStr(evalStr);
Assert.assertNotNull(resObject);
Double result = (Double) resObject;
Assert.assertEquals(expected, result);
}
public void upload() {
try {
byte[] buffer = new byte[(int) file.getSize()];
this.getInstance().setRadiografiaDental(buffer);
FacesMessage msg =
new FacesMessage("Ok", "Fichero " + file.getFileName() + " subido correctamente.");
FacesContext.getCurrentInstance().addMessage(null, msg);
} catch (Exception e) {
log.info("Consulta Odont: Error al cargar la imagen");
}
}
public void conversationEndedExceptionHandler(
@Handles(precedence = 100) CaughtException<ViewExpiredException> event,
Logger log,
HttpConversationContext conversationContext,
FacesContext facesContext) {
log.warn("View expired, redirecting to error page");
conversationContext.activate(null);
event.handled();
facesContext
.getApplication()
.getNavigationHandler()
.handleNavigation(facesContext, "*", "viewExpired");
}
@Override
public void processEvent(final SystemEvent event) throws AbortProcessingException {
if (event instanceof PreDestroyApplicationEvent && !isBeanManagerAvailable()) {
log.info(
"BeanManager no longer available; Cannot notify CDI-managed listeners of "
+ PreDestroyApplicationEvent.class.getSimpleName());
return;
}
for (SystemEventListener l : getEventListeners()) {
if (l.isListenerForSource(event.getSource())) {
l.processEvent(event);
}
}
}
public void checkPermission(Integer id) {
log.info("--------------- id " + id);
check1 = true;
check2 = false;
check3 = false;
// try {
// String qr = " select ur.role_id " +
// " from user u " +
// " left join user_role ur on(ur.user_id = u.user_id) " +
// " left join role ro on(ro.role_id = ur.role_id) " +
// " where u.user_id = "+ id ;
//
// check = em.createNativeQuery(qr).getSingleResult().toString();
// log.info("--------------- check "+check);
// if(check.equals("1")){
//
// check1 = true;
// check2 = false; // test
// check3 = false;
//
// }else if(check.equals("2")){
//
// check1 = false;
// check2 = true; // test
// check3 = false;
//
// }else if(check.equals("3")){
//
// check1 = false;
// check2 = false; // test
// check3 = true;
// }
//
//
// log.info(check1);
// log.info(check2);
// log.info(check3);
//
// } catch (Exception e) {
// e.printStackTrace();
// }
}
public void start() {
log.infof("Starting HeartbeatEmitter. Observe the HeartbeatEvent to subscribe.", Instant.now());
final Runnable emitter =
new Runnable() {
@Override
public void run() {
try {
log.debugf("heartbeat: %s", Instant.now());
heartbeat.fire(new HeartbeatEvent());
} catch (Exception e) {
log.error(e);
}
}
};
emitterHandle =
scheduler.scheduleAtFixedRate(emitter, initialDelay, periodInSeconds, TimeUnit.SECONDS);
}
@Override
public List<BussinesEntityType> load(
int first, int pageSize, String sortField, SortOrder sortOrder, Map<String, String> filters) {
log.info("load results for ..." + first + ", " + pageSize);
int end = first + pageSize;
QuerySortOrder order = QuerySortOrder.ASC;
if (sortOrder == SortOrder.DESCENDING) {
order = QuerySortOrder.DESC;
}
Map<String, Object> _filters = new HashMap<String, Object>();
/*_filters.put(BussinesEntityType_.name, getSelectedBussinesEntityType()); //Filtro por defecto
_filters.putAll(filters);*/
QueryData<BussinesEntityType> qData =
bussinesEntityTypeService.find(first, end, sortField, order, _filters);
this.setRowCount(qData.getTotalResultCount().intValue());
return qData.getResult();
}
public Message build() {
String text;
String detail = null;
try {
text = bundles.get(clientLocale, textKey.getBundle()).getString(textKey.getKey());
if (detailKey != null) {
detail = bundles.get(clientLocale, detailKey.getBundle()).getString(detailKey.getKey());
}
} catch (Exception e) {
log.warn("Could not load bundle: " + textKey);
text = textDefault;
}
if ((text == null) || "".equals(text)) {
text = textKey.toString();
}
template.text(text);
if (detail != null) {
template.detail(detail);
}
return template.build();
}
public void setFirstResult(int firstResult) {
log.info("set first result + firstResult");
this.firstResult = firstResult;
this.resultList = null;
}
/** @author cesar */
@RequestScoped
@Named
public class BussinesEntityTypeListService extends LazyDataModel<BussinesEntityType> {
private static final long serialVersionUID = 4819808125494695200L;
private static final int MAX_RESULTS = 5;
private static org.jboss.solder.logging.Logger log =
org.jboss.solder.logging.Logger.getLogger(BussinesEntityTypeListService.class);
@Inject @Web private EntityManager entityManager;
@Inject private BussinesEntityTypeService bussinesEntityTypeService;
private List<BussinesEntityType> resultList;
private int firstResult = 0;
private BussinesEntityType[] selectedBussinesEntitiesType;
private BussinesEntityType selectedBussinesEntityType; // Filtro de cuenta schema
public BussinesEntityTypeListService() {
setPageSize(MAX_RESULTS);
resultList = new ArrayList<BussinesEntityType>();
}
public List<BussinesEntityType> getResultList() {
if (resultList.isEmpty() /*&& getSelectedBussinesEntityType() != null*/) {
resultList = bussinesEntityTypeService.find(this.getPageSize(), firstResult);
}
return resultList;
}
public void setResultList(List<BussinesEntityType> resultList) {
this.resultList = resultList;
}
public String find() {
/*
try {
init();
resultList = bussinesEntityTypeService.findAll();
String summary = "Encontrados! ";
FacesContext.getCurrentInstance().addMessage(null, new FacesMessage(FacesMessage.SEVERITY_INFO, summary, null));
System.out.println("lista "+resultList.get(0));
} catch (Exception e) {
}
*/
this.getResultList();
return "/pages/admin/bussinesentitytype/list";
}
public int getNextFirstResult() {
return firstResult + this.getPageSize();
}
public int getPreviousFirstResult() {
return this.getPageSize() >= firstResult ? 0 : firstResult - this.getPageSize();
}
public int getFirstResult() {
return firstResult;
}
public void setFirstResult(int firstResult) {
log.info("set first result + firstResult");
this.firstResult = firstResult;
this.resultList = null;
}
public boolean isPreviousExists() {
return firstResult > 0;
}
@PostConstruct
public void init() {
log.info("Setup entityManager into bussinesEntityTypeService...");
bussinesEntityTypeService.setEntityManager(entityManager);
}
@Override
public BussinesEntityType getRowData(String rowKey) {
return bussinesEntityTypeService.findByName(rowKey);
}
@Override
public Object getRowKey(BussinesEntityType entity) {
return entity.getName();
}
public BussinesEntityType[] getSelectedBussinesEntitiesType() {
return selectedBussinesEntitiesType;
}
public void setSelectedBussinesEntitiesType(BussinesEntityType[] selectedBussinesEntitiesType) {
this.selectedBussinesEntitiesType = selectedBussinesEntitiesType;
}
public BussinesEntityType getSelectedBussinesEntityType() {
return selectedBussinesEntityType;
}
public void setSelectedBussinesEntityType(BussinesEntityType selectedBussinesEntityType) {
this.selectedBussinesEntityType = selectedBussinesEntityType;
}
@Override
public List<BussinesEntityType> load(
int first, int pageSize, String sortField, SortOrder sortOrder, Map<String, String> filters) {
log.info("load results for ..." + first + ", " + pageSize);
int end = first + pageSize;
QuerySortOrder order = QuerySortOrder.ASC;
if (sortOrder == SortOrder.DESCENDING) {
order = QuerySortOrder.DESC;
}
Map<String, Object> _filters = new HashMap<String, Object>();
/*_filters.put(BussinesEntityType_.name, getSelectedBussinesEntityType()); //Filtro por defecto
_filters.putAll(filters);*/
QueryData<BussinesEntityType> qData =
bussinesEntityTypeService.find(first, end, sortField, order, _filters);
this.setRowCount(qData.getTotalResultCount().intValue());
return qData.getResult();
}
public void onRowSelect(SelectEvent event) {
FacesMessage msg =
new FacesMessage(
UI.getMessages("module.BussinesEntityType") + " " + UI.getMessages("common.selected"),
((BussinesEntityType) event.getObject()).getName());
FacesContext.getCurrentInstance().addMessage("", msg);
}
public void onRowUnselect(UnselectEvent event) {
FacesMessage msg =
new FacesMessage(
UI.getMessages("module.BussinesEntityType") + " " + UI.getMessages("common.unselected"),
((BussinesEntityType) event.getObject()).getName());
FacesContext.getCurrentInstance().addMessage("", msg);
this.setSelectedBussinesEntityType(null);
}
}
@PostConstruct
public void init() {
log.info("Setup entityManager into bussinesEntityTypeService...");
bussinesEntityTypeService.setEntityManager(entityManager);
}
/** * @author <a href="mailto:[email protected]">Lincoln Baxter, III</a> * @author <a href="mailto:[email protected]">Sebastian Sachtleben</a> */ public class BundleTemplateMessageImpl implements BundleTemplateMessage { @Inject TemplateMessage template; private String textDefault; private BundleKey textKey; private BundleKey detailKey; @Inject ApplicationBundles bundles; @Inject @Client Locale clientLocale; private final Logger log = Logger.getLogger(BundleTemplateMessageImpl.class); public Message build() { String text; String detail = null; try { text = bundles.get(clientLocale, textKey.getBundle()).getString(textKey.getKey()); if (detailKey != null) { detail = bundles.get(clientLocale, detailKey.getBundle()).getString(detailKey.getKey()); } } catch (Exception e) { log.warn("Could not load bundle: " + textKey); text = textDefault; } if ((text == null) || "".equals(text)) { text = textKey.toString(); } template.text(text); if (detail != null) { template.detail(detail); } return template.build(); } /* * Setters */ public BundleTemplateMessageImpl key(final BundleKey text) { this.textKey = text; return this; } public BundleTemplateMessageImpl detail(final BundleKey detailKey) { this.detailKey = detailKey; return this; } public BundleTemplateMessage defaults(final String text) { this.textDefault = text; return this; } public BundleTemplateMessageImpl params(final Object... textParams) { this.template.textParams(textParams); return this; } public BundleTemplateMessageImpl detailParams(final Object... detailParams) { this.template.detailParams(detailParams); return this; } public BundleTemplateMessage targets(final String targets) { this.template.targets(targets); return this; } public BundleTemplateMessage level(final Level level) { this.template.level(level); return this; } @Override public int hashCode() { final int prime = 31; int result = 1; result = prime * result + ((template == null) ? 0 : template.hashCode()); result = prime * result + ((textDefault == null) ? 0 : textDefault.hashCode()); result = prime * result + ((textKey == null) ? 0 : textKey.hashCode()); result = prime * result + ((detailKey == null) ? 0 : detailKey.hashCode()); return result; } @Override public boolean equals(final Object obj) { if (this == obj) { return true; } if (obj == null) { return false; } if (getClass() != obj.getClass()) { return false; } BundleTemplateMessageImpl other = (BundleTemplateMessageImpl) obj; if (template == null) { if (other.template != null) { return false; } } else if (!template.equals(other.template)) { return false; } if (textDefault == null) { if (other.textDefault != null) { return false; } } else if (!textDefault.equals(other.textDefault)) { return false; } if (textKey == null) { if (other.textKey != null) { return false; } } else if (!textKey.equals(other.textKey)) { return false; } if (detailKey == null) { if (other.detailKey != null) { return false; } } else if (!detailKey.equals(other.detailKey)) { return false; } return true; } }
public class LdapGroupListPanel extends LdapEntityListPanel<LdapGroup> {
private static final Logger logger = Logger.getLogger(LdapGroupListPanel.class);
@Inject TeamService teamService;
public LdapGroupListPanel(String id, LdapManager manager) {
super(id, new LdapGroupProvider(manager, Integer.MAX_VALUE));
}
private WebMarkupContainer newGroupMembersContainer(final String id, LdapGroup group) {
WebMarkupContainer container = new WebMarkupContainer(id);
DataView<LdapUser> membersList = newGroupMembersListView(group);
container.add(membersList);
return container;
}
private DataView<LdapUser> newGroupMembersListView(LdapGroup group) {
List<LdapUser> users;
try {
users = group.getMembers();
} catch (NamingException e) {
logger.warn(e.getMessage(), e);
users = new ArrayList<>(0);
}
DataView<LdapUser> members =
new DataView<LdapUser>("membersList", new LdapGroupUsersProvider(users)) {
@Override
protected void populateItem(Item<LdapUser> item) {
LdapUser user = item.getModelObject();
WebMarkupContainer container = new WebMarkupContainer("member");
ExternalLink mail =
new ExternalLink(
"mail", Model.of("mailto:" + user.getMail()), new PropertyModel(user, "mail"));
Label userName = new Label("username", new PropertyModel(user, "userName"));
final String fullName = user.getFullName();
Label fullNameLabel = new Label("fullname", Model.of(fullName));
fullNameLabel.setVisible(fullName != null);
container.add(mail);
container.add(userName);
container.add(fullNameLabel);
item.add(container);
}
};
members.setOutputMarkupId(true);
return members;
}
@Override
public void populateItem(Item<LdapGroup> item, Check<LdapGroup> check) {
LdapGroup group = item.getModelObject();
item.add(new Label("name", new PropertyModel(group, "name")));
item.add(new Label("description", new PropertyModel(group, "description")));
item.add(newGroupMembersContainer("members", group));
if (isSelectionEnabled()) {
if (teamService.ldapBasedGroupExists(group)) {
check.setVisible(false);
item.add(new AttributeAppender("class", Model.of("warning")));
item.add(
new AttributeAppender(
"title", new StringResourceModel("table.team.warning.exists", this, null)));
} else {
item.add(new AttributeAppender("class", Model.of("success")));
}
}
}
@Override
public void selectionChanged(AjaxRequestTarget target) {
System.out.println("group selection changed");
}
private static class LdapGroupUsersProvider implements IDataProvider<LdapUser> {
private final List<LdapUser> users;
public LdapGroupUsersProvider(List<LdapUser> users) {
this.users = users;
}
@Override
public Iterator<? extends LdapUser> iterator(long first, long count) {
return users.subList((int) first, (int) Math.min(first + count, size())).iterator();
}
@Override
public long size() {
return users.size();
}
@Override
public IModel<LdapUser> model(LdapUser object) {
return Model.of(object);
}
@Override
public void detach() {}
}
}
/** @author cesar */
@Named("consultaOdontHome")
@ViewScoped
public class ConsultaOdontologicaHome extends BussinesEntityHome<ConsultaOdontologica>
implements Serializable {
private static org.jboss.solder.logging.Logger log =
org.jboss.solder.logging.Logger.getLogger(ConsultaOdontologicaHome.class);
@Inject @Web private EntityManager em;
@Inject private ConsultaOdontologicaServicio consultaOdontServicio;
@Inject private FichaMedicaServicio fichaMedicaServicio;
@Inject private FichaOdontologicaServicio fichaOdontServicio;
@Inject private Identity identity;
@Inject private ProfileService profileS;
@Inject private TratamientoServicio tratamientoServicio;
@Inject private RecetaMedicamentoService recetaMedicamentoServicio;
@Inject private RecetaServicio recetasServicio;
@Inject private ResultadoExamenLCService resultadosExamenesService;
@Inject SettingService settingService;
private Setting setting;
private Diente diente;
private FichaOdontologica fichaOdontolog;
// private Servicio servicio;
private SignosVitales signosVitales;
private Tratamiento tratamiento;
private Long fichaMedicaId;
private PedidoExamenLaboratorio pedidoExamen;
private Receta receta;
private UploadedFile file;
// private List<Servicio> listaServicios = new ArrayList<Servicio>();
private List<Diente> listaDientes = new ArrayList<Diente>();
// private List<Diente> listaDientesC1 = new ArrayList<Diente>();
// private List<Diente> listaDientesC2 = new ArrayList<Diente>();
// private List<Diente> listaDientesC3 = new ArrayList<Diente>();
// private List<Diente> listaDientesC4 = new ArrayList<Diente>();
private List<Tratamiento> tratamientos = new ArrayList<Tratamiento>();
@Inject private ExamenLabService examenLabService;
@Inject private PedidoExamenService pedidoServicio;
private List<ExamenLabClinico> listaExamenLab = new ArrayList<ExamenLabClinico>();
private PedidoExamenLaboratorio pedido;
private Long turnoId;
private Turno turno = new Turno();
@Inject private TurnoService turnoS;
public Long getConsultaOdontologicaId() {
return (Long) getId();
}
public void setConsultaOdontologicaId(Long consultaOdontId) {
setId(consultaOdontId);
tratamientos =
tratamientoServicio.buscarPorConsultaOdontologica(
consultaOdontServicio.getPorId(getConsultaOdontologicaId()));
}
public FichaOdontologica getFichaOdontolog() {
return fichaOdontolog;
}
public void setFichaOdontolog(FichaOdontologica fichaOdontolog) {
this.fichaOdontolog = fichaOdontolog;
}
public Long getFichaMedicaId() {
return fichaMedicaId;
}
public void setFichaMedicaId(Long fichaMedicaId) {
this.fichaMedicaId = fichaMedicaId;
if (fichaMedicaId != null) {
this.setFichaOdontolog(
fichaOdontServicio.getFichaOdontologicaPorFichaMedica(
fichaMedicaServicio.getFichaMedicaPorId(fichaMedicaId)));
}
}
public SignosVitales getSignosVitales() {
return signosVitales;
}
public void setSignosVitales(SignosVitales signosVitales) {
this.signosVitales = signosVitales;
}
public Diente getDiente() {
return diente;
}
public void setDiente(Diente diente) {
log.info("valor diente: " + diente.toString());
this.diente = diente;
}
public Tratamiento getTratamiento() {
return tratamiento;
}
public void setTratamiento(Tratamiento tratamiento) {
this.tratamiento = tratamiento;
}
public UploadedFile getFile() {
return file;
}
public void setFile(UploadedFile file) {
this.file = file;
}
public List<Diente> getListaDientes() {
return listaDientes;
}
public void setListaDientes(List<Diente> listaDientes) {
this.listaDientes = listaDientes;
}
// public List<Diente> getListaDientesC1() {
// //this.IniciarDientes();
// Collections.sort(listaDientesC1);
// return listaDientesC1;
// }
//
// public void setListaDientesC1(List<Diente> listaDientesC1) {
// this.listaDientesC1 = listaDientesC1;
// }
//
// public List<Diente> getListaDientesC2() {
// return listaDientesC2;
// }
//
// public void setListaDientesC2(List<Diente> listaDientesC2) {
// this.listaDientesC2 = listaDientesC2;
// }
//
// public List<Diente> getListaDientesC3() {
// return listaDientesC3;
// }
//
// public void setListaDientesC3(List<Diente> listaDientesC3) {
// this.listaDientesC3 = listaDientesC3;
// }
// public List<Diente> getListaDientesC4() {
// Collections.sort(listaDientesC4);
// return listaDientesC4;
// }
//
// public void setListaDientesC4(List<Diente> listaDientesC4) {
// this.listaDientesC4 = listaDientesC4;
// }
public List<Tratamiento> getTratamientos() {
return tratamientos;
}
public void setTratamientos(List<Tratamiento> tratamientos) {
this.tratamientos = tratamientos;
}
public PedidoExamenLaboratorio getPedidoExamen() {
return pedidoExamen;
}
public void setPedidoExamen(PedidoExamenLaboratorio pedidoExamen) {
this.pedidoExamen = pedidoExamen;
}
public Receta getReceta() {
return receta;
}
public void setReceta(Receta receta) {
this.receta = receta;
}
public PedidoExamenLaboratorio getPedido() {
return pedido;
}
public void setPedido(PedidoExamenLaboratorio pedido) {
this.pedido = pedido;
}
public List<ExamenLabClinico> getListaExamenLab() {
return listaExamenLab;
}
public void setListaExamenLab(List<ExamenLabClinico> listaExamenLab) {
this.listaExamenLab = listaExamenLab;
}
public Long getTurnoId() {
return turnoId;
}
public void setTurnoId(Long turnoId) {
this.turnoId = turnoId;
if (turnoId != null) {
turno = turnoS.find(turnoId);
}
}
public Turno getTurno() {
return turno;
}
public void setTurno(Turno turno) {
this.turno = turno;
}
@TransactionAttribute
public ConsultaOdontologica load() {
if (isIdDefined()) {
wire();
}
// log.info("sgssalud --> cargar instance " + getInstance());
if (getInstance().isPersistent()) {
if (getInstance().getResponsable() == null) {
getInstance().setResponsable(profileS.getProfileByIdentityKey(identity.getUser().getKey()));
}
}
return getInstance();
}
@TransactionAttribute
public void wire() {
getInstance();
}
@PostConstruct
public void init() {
setEntityManager(em);
bussinesEntityService.setEntityManager(em);
consultaOdontServicio.setEntityManager(em);
fichaMedicaServicio.setEntityManager(em);
fichaOdontServicio.setEntityManager(em);
profileS.setEntityManager(em);
tratamientoServicio.setEntityManager(em);
recetaMedicamentoServicio.setEntityManager(em);
recetasServicio.setEntityManager(em);
receta = new Receta();
resultadosExamenesService.setEntityManager(em);
settingService.setEntityManager(em);
setting = settingService.findByName("consultaActiva");
// if (getInstance().isPersistent()) {
//// this.IniciarDientes();
// Odontograma o = new Odontograma();
// // o.setDientes(listaDientes);
//// log.info("Init Dientes " + fichaOdontolog.toString());
// //fichaOdontolog.setOdontograma(o);
// //fichaOdontolog.setOdontogramaInicial(o);
// }
// getInstance().setTiempoConsulta(FechasUtil.sumarRestaMinutosFecha(getInstance().getHoraConsulta(), 30));
// log.info("Odont Inicial " + fichaOdontolog.getOdontogramaInicial());
// log.info("Odont " + fichaOdontolog.getOdontograma());
/*if (!fichaOdontolog.getOdontograma().isPersistent()) {
fichaOdontolog.setOdontograma(o);
}
if (!fichaOdontolog.getOdontogramaInicial().isPersistent()) {
fichaOdontolog.setOdontogramaInicial(o);
}*/
examenLabService.setEntityManager(em);
pedidoServicio.setEntityManager(em);
listaExamenLab = examenLabService.getExamenesLab();
pedido = new PedidoExamenLaboratorio();
turnoS.setEntityManager(em);
}
@Override
protected ConsultaOdontologica createInstance() {
// prellenado estable para cualquier clase
BussinesEntityType _type =
bussinesEntityService.findBussinesEntityTypeByName(ConsultaOdontologica.class.getName());
Date now = Calendar.getInstance().getTime();
ConsultaOdontologica consultaOdont = new ConsultaOdontologica();
consultaOdont.setCreatedOn(now);
consultaOdont.setLastUpdate(now);
consultaOdont.setActivationTime(now);
consultaOdont.setSignosVitales(new SignosVitales());
consultaOdont.setType(_type);
consultaOdont.buildAttributes(bussinesEntityService);
// fOdontologica.setCreatedOn(now);
// fOdontologica.setActivationTime(now);
// fOdontologica.setLastUpdate(now);
return consultaOdont;
}
@Override
public Class<ConsultaOdontologica> getEntityClass() {
return ConsultaOdontologica.class;
}
@TransactionAttribute
public String guardar() {
String salida = "";
System.out.println("Guardar__________");
Date now = Calendar.getInstance().getTime();
getInstance().setLastUpdate(now);
getInstance().setTiempoConsulta(FechasUtil.sumarRestaMinutosFecha(now, 5));
try {
if (getInstance().isPersistent()) {
// System.out.println("Guardar__________1" + getInstance().getId());
getInstance().setCode("REALIZADA");
getInstance().setResponsable(profileS.getProfileByIdentityKey(identity.getUser().getKey()));
getInstance().getSignosVitales().setFechaActual(now);
// System.out.println("Guardar__________ 2");
save(getInstance());
if (turno.isPersistent()) {
turno.setEstado("Realizada");
save(turno);
}
FacesMessage msg =
new FacesMessage(
"Se actualizo Consulta Odontológica: " + getInstance().getId() + " con éxito");
FacesContext.getCurrentInstance().addMessage("", msg);
System.out.println("Guardar__________3");
} else {
getInstance().setCode("REALIZADA");
getInstance().setFichaOdontologica(fichaOdontolog);
getInstance().setResponsable(profileS.getProfileByIdentityKey(identity.getUser().getKey()));
getInstance().getSignosVitales().setFechaActual(now);
create(getInstance().getSignosVitales());
create(getInstance());
save(getInstance());
if (turno.isPersistent()) {
turno.setEstado("Realizada");
save(turno);
}
FacesMessage msg =
new FacesMessage(
"Se creo nueva Consulta Odontológica: " + getInstance().getId() + " con éxito");
FacesContext.getCurrentInstance().addMessage("", msg);
salida =
"/pages/depSalud/odontologia/consultaOdontologica.xhtml?faces-redirect=true"
+ "&fichaMedicaId="
+ getFichaMedicaId()
+ "&consultaOdontId="
+ getInstance().getId()
+ "&backView="
+ getBackView();
}
} catch (Exception e) {
e.printStackTrace();
FacesMessage msg = new FacesMessage("Error al guardar: " + getInstance().getId());
FacesContext.getCurrentInstance().addMessage("", msg);
}
return salida;
}
/*
@TransactionAttribute
public void guardarTratamiento() {
log.info("valor diente: " + diente);
diente.setRutaIcon(servicio.getRutaImg());
tratamiento.setFechaRelizacion(new Date());
tratamientos.add(tratamiento);
this.actualizarDiente(diente);
}*/
/*
@TransactionAttribute
public String agregarOdontograma(int odont) {
String salida = null;
Odontograma odontog = new Odontograma();
//odontog.setDientes(this.agregarDientes());
try {
if (odont == 1) { //inicial
create(odontog);
fichaOdontolog.setOdontogramaInicial(odontog);
save(odontog);
save(fichaOdontolog);
salida = "/pages/depSalud/odontologia/odont.xhtml?faces-redirect=true"
+ "&fichaMedicaId=" + getFichaMedicaId()
+ "&consultaOdontId=" + getInstance().getId()
+ "&odontogramaId=" + odontog.getId()
+ "&backView=consultaOdontologica"
+ "&tipo=1";
} else { //Evolutivo
create(odontog);
fichaOdontolog.setOdontograma(odontog);
save(odontog);
save(fichaOdontolog);
salida = "/pages/depSalud/odontologia/odont.xhtml?faces-redirect=true"
+ "&fichaMedicaId=" + getFichaMedicaId()
+ "&consultaOdontId=" + getInstance().getId()
+ "&odontogramaId=" + odontog.getId()
+ "&backView=consultaOdontologica"
+ "&tipo=0";
}
} catch (Exception e) {
FacesMessage msg = new FacesMessage("Error", "al crear odontograma");
FacesContext.getCurrentInstance().addMessage(null, msg);
}
return salida;
}*/
public void upload() {
try {
byte[] buffer = new byte[(int) file.getSize()];
this.getInstance().setRadiografiaDental(buffer);
FacesMessage msg =
new FacesMessage("Ok", "Fichero " + file.getFileName() + " subido correctamente.");
FacesContext.getCurrentInstance().addMessage(null, msg);
} catch (Exception e) {
log.info("Consulta Odont: Error al cargar la imagen");
}
}
@TransactionAttribute
public String borrarReceta() {
System.out.println("Borrar receta_______: " + receta.toString());
String salida = "";
try {
if (getInstance().isPersistent()) {
Receta_Medicamento aux;
List<Receta_Medicamento> listaRM = recetaMedicamentoServicio.obtenerPorReceta(receta);
for (Receta_Medicamento recetaMed1 : listaRM) {
Medicamento medicament = recetaMed1.getMedicamento();
int cantidad = medicament.getUnidades() + recetaMed1.getCantidad();
medicament.setUnidades(cantidad);
aux = recetaMed1;
em.merge(medicament);
em.remove(aux);
}
delete(receta);
// wire();
// this.getInstance().setRecetas(recetasServicio.buscarRecetaPorConsultaMedica(getInstance()));
System.out.println("ELIMINO RECETA");
FacesContext.getCurrentInstance()
.addMessage(
null,
new FacesMessage(
FacesMessage.SEVERITY_INFO, "Se elimino receta", "" + getInstance().getId()));
salida =
"/pages/depSalud/odontologia/consultaOdontologica.xhtml?faces-redirect=true"
+ "&fichaMedicaId="
+ getFichaMedicaId()
+ "&consultaOdontId="
+ getInstance().getId()
+ "&backView="
+ getBackView();
}
} catch (Exception e) {
FacesContext.getCurrentInstance()
.addMessage(null, new FacesMessage(FacesMessage.SEVERITY_ERROR, "ERRORE", e.toString()));
e.printStackTrace();
}
return salida;
}
@TransactionAttribute
public String borrarPedidoExamen() {
System.out.println("Borrar Pedido Examen_______: " + pedidoExamen.toString());
String salida = "";
try {
if (getPedidoExamen().isPersistent()) {
List<ResultadoExamenLabClinico> listaResultadosExamenLab =
new ArrayList<ResultadoExamenLabClinico>();
listaResultadosExamenLab =
resultadosExamenesService.getResultadosExamenPorPedidoExamen(pedidoExamen);
ResultadoExamenLabClinico aux;
for (ResultadoExamenLabClinico result : listaResultadosExamenLab) {
aux = result;
em.remove(aux);
}
delete(pedidoExamen);
// System.out.println("ELIMINO Pedido");
FacesContext.getCurrentInstance()
.addMessage(
null,
new FacesMessage(
FacesMessage.SEVERITY_INFO, "Se elimino Pedido", "" + pedidoExamen.getId()));
salida =
"/pages/depSalud/odontologia/consultaOdontologica.xhtml?faces-redirect=true"
+ "&fichaMedicaId="
+ getFichaMedicaId()
+ "&consultaOdontId="
+ getInstance().getId()
+ "&backView="
+ getBackView();
}
} catch (Exception e) {
FacesContext.getCurrentInstance()
.addMessage(null, new FacesMessage(FacesMessage.SEVERITY_ERROR, "ERRORE", e.toString()));
e.printStackTrace();
}
return salida;
}
public boolean isEditable() {
// return FechasUtil.editable(getInstance().getFechaConsulta(), getInstance().getHoraConsulta(),
// 24);
if ("REALIZADA".equals(getInstance().getCode()) && "false".equals(setting.getValue())) {
// System.out.println("DESHABILITADO");
return true;
}
return false;
}
@TransactionAttribute
public String agregarPedido() {
Date now = Calendar.getInstance().getTime();
System.out.println("INGRESo a Guardar _________");
String salida = null;
boolean ning = false;
for (ExamenLabClinico ex : listaExamenLab) {
if (ex.isSelect()) {
ning = true;
break;
}
}
try {
if (!ning) {
// save(getInstance());
FacesMessage msg =
new FacesMessage(FacesMessage.SEVERITY_WARN, "Debe seleccionar minimo un examen", null);
FacesContext.getCurrentInstance().addMessage("", msg);
// return null;
} else {
// this.listaPedidoExamenLabC = pickListExamenesLab.getTarget();
pedido.setFichaOdontologica(fichaOdontolog);
pedido.setPaciente(fichaOdontolog.getFichaMedica().getPaciente());
pedido.setEstado("Nuevo");
pedido.setResponsableEmision(profileS.getProfileByIdentityKey(identity.getUser().getKey()));
pedido.setFechaPedido(now);
create(pedido);
save(pedido);
update();
// System.out.println("Guardo Con exito 0_________");
ResultadoExamenLabClinico resultadoExa;
List<Parametros> pl = null; //
for (ExamenLabClinico ex : this.listaExamenLab) {
if (ex.isSelect()) {
resultadoExa = new ResultadoExamenLabClinico();
resultadoExa.setExamenLab(ex);
resultadoExa.setPedidoExamenLab(pedido);
pl = examenLabService.getParametrosPorExamen(ex);
resultadoExa.agregarValoresResultados(pl);
save(resultadoExa);
// update();
}
}
FacesMessage msg =
new FacesMessage(
"Se agrego nuevo Pedido de Examenes: " + getInstance().getId() + " con éxito");
FacesContext.getCurrentInstance().addMessage("", msg);
pedido = new PedidoExamenLaboratorio();
// hc = hcs.buscarPorFichaMedica(fms.getFichaMedicaPorId(fichaMedicaId));
RequestContext.getCurrentInstance().update(":form:tabOpc:tablaPedidos :form:growl");
RequestContext.getCurrentInstance().execute("pedidoDlg.hide();");
salida =
"/pages/depSalud/odontologia/consultaOdontologica.xhtml?faces-redirect=true"
+ "&fichaMedicaId="
+ getFichaMedicaId()
+ "&consultaOdontId="
+ getInstance().getId()
+ "&backView="
+ getBackView();
}
} catch (Exception e) {
e.printStackTrace();
FacesMessage msg = new FacesMessage("Error al guardar: " + getInstance().getId());
FacesContext.getCurrentInstance().addMessage("", msg);
}
return salida;
}
}
public void setDiente(Diente diente) {
log.info("valor diente: " + diente.toString());
this.diente = diente;
}
/** Various utilities used on the platform */
@Setter
@Getter
@Singleton
public class UQasarUtil {
static final String SEPARATOR = java.nio.file.FileSystems.getDefault().getSeparator();
static final String ONTOLOGYFILE = "uq-ontology-model.rdf";
protected static ResourceBundle res = null;
private static Logger logger = Logger.getLogger(UQasarUtil.class);
// List containing the notifications triggered by the rules' engine
@Setter @Getter private static List<INotification> notifications = new ArrayList<>();
@Setter @Getter private static Date latestTreeUpdateDate = new Date();
@Setter @Getter
private static Model uqModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
// Enumeration for the various suggestion types
public enum SuggestionType {
NO_SUGGESTION("no_suggestion"),
QO_REMOVE("qo.remove"),
QO_REPLACE("qo.replace"),
METRIC_REMOVE("metric.remove"),
;
private final String labelKey;
SuggestionType(final String labelKey) {
this.labelKey = labelKey;
}
@Override
public String toString() {
return getLabelModel().getObject();
}
public IModel<String> getLabelModel() {
return ResourceBundleLocator.getLabelModel(UQasarUtil.class, "suggestion." + labelKey);
}
public static List<SuggestionType> getAllSuggestionTypes() {
return Arrays.asList(values());
}
}
/**
* Get the temp directory to be used; in case JBoss is used, use its temp dir, otherwise the user
* temp.
*
* @return
*/
public static String getTempDirPath() {
String tempDirectory = null;
Properties systemProp = System.getProperties();
// In case JBoss is used, use the JBoss temp dir
if (systemProp.containsKey("jboss.server.temp.dir")) {
tempDirectory = systemProp.getProperty("jboss.server.temp.dir");
if (!tempDirectory.endsWith(SEPARATOR)) {
tempDirectory += SEPARATOR;
}
}
// Otherwise use a temp directory
else {
tempDirectory = System.getProperty("java.io.tmpdir");
if (!tempDirectory.endsWith(SEPARATOR)) {
tempDirectory += SEPARATOR;
}
}
return tempDirectory;
}
/**
* Get the data dir to be used; in case JBoss is used, use its data dir, otherwise the user temp.
*
* @return
*/
public static String getDataDirPath() {
String dataDirectory = null;
Properties systemProp = System.getProperties();
// In case JBoss is used
if (systemProp.containsKey("jboss.server.data.dir")) {
dataDirectory = systemProp.getProperty("jboss.server.data.dir");
if (!dataDirectory.endsWith(SEPARATOR)) {
dataDirectory += SEPARATOR;
}
}
// Otherwise use a temp directory
else {
dataDirectory = System.getProperty("java.io.tmpdir");
if (!dataDirectory.endsWith(SEPARATOR)) {
dataDirectory += SEPARATOR;
}
}
return dataDirectory;
}
/**
* Construct a formula string to be evaluated.
*
* @param varsAndOpers
* @return
*/
public static String constructFormula(List<Object> varsAndOpers) {
String formula = "";
for (Object object : varsAndOpers) {
formula += object;
}
logger.info("Constructed formula to be evaluated: " + formula);
return formula;
}
/**
* Get properties resource
*
* @return
*/
public static ResourceBundle getProperties() {
if (res == null) {
loadProperties();
}
return res;
}
/** Load properties file */
private static void loadProperties() {
res = ResourceBundle.getBundle("uqasar");
}
/**
* Round double to two decimals
*
* @param number
* @return
*/
public static Double round(double number) {
DecimalFormat df = new DecimalFormat("#,##");
df.setRoundingMode(RoundingMode.DOWN);
String s = df.format(number);
return Double.valueOf(s);
}
/**
* Replace whitespace chars with the defined separator and escape the String
*
* @param name
*/
public static String sanitizeName(String name) {
final String SEPARATOR = "_";
if (name.contains(" ")) {
String processed = name.replaceAll(" ", SEPARATOR).concat(SEPARATOR);
return StringEscapeUtils.escapeJavaScript(processed);
}
// Otherwise return the actual string
return name;
}
/**
* Replace the separator with whitespaces and unescape the String
*
* @param name
* @return
*/
public static String unSanitizeName(String name) {
final String SEPARATOR = "_";
if (name.contains(SEPARATOR)) {
return StringEscapeUtils.unescapeJavaScript(name).replaceAll(SEPARATOR, " ").trim();
}
return StringEscapeUtils.unescapeJavaScript(name).trim();
}
/**
* Get the pwd used for encrypting and decrypting adapter passwords TODO: Where could this be
* saved securely
*
* @return
*/
public static String getEncDecPwd() {
return "jvnqeiPIqX_6cpdOYfDc7sHk7nEIv4zRn5984JwIHnq4AX7XQt";
}
/**
* Get the Jira metric names TODO: Fetch the list of metrics from uQasarMetric
*
* @return
*/
public static List<String> getJiraMetricNames() {
String metrics[] = {
"PROJECTS_PER_SYSTEM_INSTANCE",
"ISSUES_PER_PROJECTS_PER_SYSTEM_INSTANCE",
"FIXED_ISSUES_PER_PROJECT",
"UNRESOLVED_ISSUES_PER_PROJECT",
"UNRESOLVED_BUG_ISSUES_PER_PROJECT",
"UNRESOLVED_TASK_ISSUES_PER_PROJECT"
};
return Arrays.asList(metrics);
}
public static List<String> getJiraMetricNamesAbbreviated() {
String metrics[] = {"Projects", "Issues", "Fixed issues", "Unresolved issues"};
return Arrays.asList(metrics);
}
/**
* TODO: Fetch the list of metrics from uQasarMetric Get the Sonar metric names
*
* @return
*/
public static List<String> getSonarMetricNames() {
String metrics[] = {
"NCLOC", // lines of code (NC=non comment)
"LINES", // lines (i.e. all lines)
"COMMENT_LINES", // number of comment lines
"STATEMENTS", // number of statements
"CLASSES", // number of classes
"FILES", // number of files
"DIRECTORIES", // number of directories
"FUNCTIONS", // number of functions
"COMMENT_LINES_DENSITY", // the density of comment lines (number in [0..100])
"DUPLICATED_LINES", // number of duplicated lines
"DUPLICATED_LINES_DENSITY", // the density of duplicated lines (number in [0..100])
"COMPLEXITY", // cyclomatic complexity of the project
"FUNCTION_COMPLEXITY", // the average cyclomatic complexity of a function
"FILE_COMPLEXITY", // the average cyclomatic complexity of a source code file
"CLASS_COMPLEXITY", // the average cyclomatic complexity of a class
"UT_COVERAGE", // code coverage by unit tests
"AT_COVERAGE", // code coverage by acceptance tests
"OVERALL_COVERAGE", // code coverage by both, unit and acceptance tests
"PACKAGE_TANGLES", // Number of file dependencies to cut in order to remove all cycles between
// directories.
"PACKAGE_TANGLE_INDEX", // Level of directory interdependency. Best value (0%) means that
// there is no cycle and worst value (100%) means that directories are
// really tangled.
"TEST_SUCCESS_DENSITY", // ratio of successfully executed tests to the overall number of te
"TEST_FAILURES", // number of failed tests (failure = test could be run and is failed)
"TEST_ERRORS", // number of errored tests (error = test could not be run)
"TESTS", // number of tests
// Sonar, available metrics that can be used if they are implemented on the adapter
// /* core statistics */
// "LINES",
// "NCLOC",
// "CLASSES",
// "FILES",
// "DIRECTORIES",
// "PACKAGES",
// "FUNCTIONS",
// "ACCESSORS",
// "STATEMENTS",
// "PUBLIC_API",
//
// /* complexity */
// "COMPLEXITY",
// "CLASS_COMPLEXITY",
// "FUNCTION_COMPLEXITY",
// "FILE_COMPLEXITY",
// "CLASS_COMPLEXITY_DISTRIBUTION",
// "FUNCTION_COMPLEXITY_DISTRIBUTION",
//
// /* comments */
// "COMMENT_LINES",
// "COMMENT_LINES_DENSITY",
// "PUBLIC_DOCUMENTED_API_DENSITY",
// "PUBLIC_UNDOCUMENTED_API",
// "COMMENTED_OUT_CODE_LINES",
//
// /* unit tests */
// "TESTS",
// "TEST_EXECUTION_TIME",
// "TEST_ERRORS",
// "SKIPPED_TESTS",
// "TEST_FAILURES",
// "TEST_SUCCESS_DENSITY",
// "TEST_DATA",
//
// /* code coverage by unit tests */
// "COVERAGE",
// "LINES_TO_COVER",
// "UNCOVERED_LINES",
// "LINE_COVERAGE",
// "COVERAGE_LINE_HITS_DATA",
//
// "CONDITIONS_TO_COVER",
// "UNCOVERED_CONDITIONS",
// "BRANCH_COVERAGE",
// "BRANCH_COVERAGE_HITS_DATA",
//
// "UNCOVERED_COMPLEXITY_BY_TESTS",
//
// /* duplicated lines */
// "DUPLICATED_LINES",
// "DUPLICATED_BLOCKS",
// "DUPLICATED_FILES",
// "DUPLICATED_LINES_DENSITY",
// "DUPLICATIONS_DATA",
//
// /* coding rules */
// "USABILITY",
// "RELIABILITY",
// "EFFICIENCY",
// "PORTABILITY",
// "MAINTAINABILITY",
//
// "WEIGHTED_VIOLATIONS",
// "VIOLATIONS_DENSITY",
// "VIOLATIONS",
// "BLOCKER_VIOLATIONS",
// "CRITICAL_VIOLATIONS",
// "MAJOR_VIOLATIONS",
// "MINOR_VIOLATIONS",
// "INFO_VIOLATIONS",
};
return Arrays.asList(metrics);
}
/**
* TODO: Fetch the list of metrics from uQasarMetric Get the TestLink metric names
*
* @return
*/
public static List<String> getTestLinkMetricNames() {
String metrics[] = {"TEST_P", "TEST_F", "TEST_B", "TEST_N", "TEST_TOTAL"};
return Arrays.asList(metrics);
}
/**
* TODO: Fetch the list of metrics from uQasarMetric Get the Cubes direct Metric names
*
* @return Cubes metric Names
*/
public static List<String> getCubesMetricNames() {
String metrics[] = {
"cube/jira/aggregate?cut=Status:Done",
"cube/jira/aggregate?cut=Type:Bug",
"cube/jira/aggregate?cut=Status:To%20Do",
"cube/jira/aggregate?cut=Priority:Blocker",
"cube/jira/aggregate?cut=Priority:Critical",
"cube/jira/aggregate?cut=Priority:Major",
"cube/jira/aggregate?cut=Priority:Minor",
"cube/jira/aggregate?cut=Status:Open&cut=Priority:Major",
// "cube/jira/fact/UQ-1",
// "cube/jira/model",
// "cube/jira/cell",
// "cube/jira/members/Status",
// "cube/jira/facts",
// "cubes"
};
return Arrays.asList(metrics);
}
public static List<String> getGitlabMetricNames() {
String metrics[] = {"GIT_COMMITS", "GIT_PROJECTS"};
return Arrays.asList(metrics);
}
/**
* Convert minutes to ms
*
* @param minutes
* @return
*/
public static int minsToMs(int minutes) {
final int SEC = 60;
final int MS = 1000;
return minutes * SEC * MS;
}
/**
* Compare two dates returning true if equal and false if not. This comparison omits milliseconds
*
* @param dateOne
* @param dateTwo
* @return
*/
public static boolean isDateEqual(Date dateOne, Date dateTwo) {
SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd HH:mm");
String date1 = sdf.format(dateOne);
String date2 = sdf.format(dateTwo);
if (date1.equals(date2)) {
return true;
}
return false;
}
/**
* Takes care of computing the tree values (update metrics and compute QO/QI values based on that)
* starting from the root node.
*
* @param projectRoot Node
*/
public static void updateTree(TreeNode projectRoot) {
// Create a timestamp at the start of the tree update so that
// all the updated entities have the same value for the date.
setLatestTreeUpdateDate(new Date());
logger.info("Updating the QA Project tree...");
postorder(projectRoot);
}
/**
* Traverse the tree in postorder and update tree values
*
* @param node
*/
private static void postorder(TreeNode node) {
if (node == null) {
return;
}
logger.debug("------------postorder: " + node.getName() + "---------------");
// Iterate the node children
for (Object o : node.getChildren()) {
TreeNode nodeChild = (TreeNode) o;
UQasarUtil.postorder(nodeChild);
}
logger.debug("Traversing project tree in postorder..." + node.toString());
// Update the value
try {
InitialContext ic = new InitialContext();
AdapterDataService adapterDataService = new AdapterDataService();
TreeNodeService treeNodeService = (TreeNodeService) ic.lookup("java:module/TreeNodeService");
if (node instanceof Metric) {
Metric metric = (Metric) node;
logger.debug("Recomputing the value of the Metric " + node);
Float value = null;
if (metric.getMetricSource() == MetricSource.Manual) {
metric.updateQualityStatus();
} else {
value =
adapterDataService.getMetricValue(
metric.getMetricSource(), metric.getMetricType(), metric.getProject());
metric.setValue(value);
}
metric.setLastUpdated(getLatestTreeUpdateDate());
metric.addHistoricValue();
// End Metric node treatment
} else if (node instanceof QualityIndicator) {
logger.info("Recomputing the value of the Quality Indicator " + node);
QualityIndicator qi = (QualityIndicator) node;
if (qi.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qi.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qi.setValue(computedValue);
qi.setLastUpdated(getLatestTreeUpdateDate());
treeNodeService.update(qi);
}
}
} else {
float achieved = 0;
float denominator = 0;
for (final TreeNode me : qi.getChildren()) {
float weight = ((Metric) me).getWeight();
if (me.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
if (denominator == 0) qi.getChildren().size();
qi.setValue(achieved * 100 / denominator);
}
qi.setLastUpdated(getLatestTreeUpdateDate());
qi.addHistoricValue();
// End Q.Indicator node treatment
} else if (node instanceof QualityObjective) {
logger.info("Recomputing the value of the Quality Objective " + node);
QualityObjective qo = (QualityObjective) node;
if (qo.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qo.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qo.setValue(computedValue);
qo.setLastUpdated(getLatestTreeUpdateDate());
}
}
} else {
float denominator = 0;
float achieved = 0;
for (final TreeNode qi : qo.getChildren()) {
float weight = ((QualityIndicator) qi).getWeight();
if (qi.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
qo.setValue(achieved * 100 / denominator);
}
qo.setLastUpdated(getLatestTreeUpdateDate());
qo.addHistoricValue();
// End Quality Objective node treatment
} else if (node instanceof Project) {
logger.info("Recomputing the value of the Project " + node);
Project prj = (Project) node;
double qoValueSum = 0;
double denominator = 0;
for (Object o : node.getChildren()) {
QualityObjective qo = (QualityObjective) o;
if (qo.getWeight() == 0) {
continue;
}
qoValueSum += qo.getValue() * (prj.isFormulaAverage() ? qo.getWeight() : 1);
denominator += prj.isFormulaAverage() ? qo.getWeight() : 1;
}
// bad idea to divide something under 0
if (denominator == 0) {
denominator = 1;
}
Double computedValue = qoValueSum / denominator;
if (computedValue != null && !computedValue.isNaN() && !computedValue.isInfinite()) {
prj.setValue(computedValue);
}
prj.setLastUpdated(getLatestTreeUpdateDate());
prj.addHistoricValue();
logger.debug(" [" + qoValueSum + "] denominator [" + denominator + "] " + computedValue);
// End Project node treatment
}
// Get a (possible) suggestion for the tree node
Multimap<?, ?> suggestions = getSuggestionForNode(node);
// TODO: take all the suggestions into account
Object[] types = suggestions.keys().toArray();
Object[] suggestionsValues = suggestions.values().toArray();
if (types.length > 0) {
// for now use the first item as suggestion
SuggestionType stype = (SuggestionType) types[0];
node.setSuggestionType(stype);
if (suggestionsValues[0] != null && !suggestionsValues[0].equals("")) {
node.setSuggestionValue((String) suggestionsValues[0]);
}
}
treeNodeService.update(node);
} catch (NamingException e) {
e.printStackTrace();
}
return;
}
/**
* Takes care of computing the tree values (update metrics and compute QO/QI values based on that)
* starting from the root node.
*
* @param projectRoot Node
*/
public static void updateTreeWithParticularNode(TreeNode projectRoot, TreeNode projectTreeNode) {
// Create a timestamp at the start of the tree update so that
// all the updated entities have the same value for the date.
setLatestTreeUpdateDate(new Date());
logger.info("Updating the QA Project tree...");
postorderWithParticularNode(projectRoot, projectTreeNode);
}
/**
* Traverse the tree in postorder and update tree values
*
* @param node
*/
private static void postorderWithParticularNode(TreeNode node, TreeNode projectTreeNode) {
if (node == null) {
return;
}
if (projectTreeNode == null) {
return;
}
logger.debug("------------postorder: " + projectTreeNode.getName() + "---------------");
logger.debug("Traversing project tree in postorder..." + projectTreeNode.toString());
// Update the value
try {
InitialContext ic = new InitialContext();
AdapterDataService adapterDataService = new AdapterDataService();
TreeNodeService treeNodeService = (TreeNodeService) ic.lookup("java:module/TreeNodeService");
if (projectTreeNode instanceof Metric) {
Metric metric = (Metric) projectTreeNode;
logger.debug("Recomputing the value of the Metric " + projectTreeNode);
Float value = null;
if (metric.getMetricSource() == MetricSource.Manual) {
metric.updateQualityStatus();
} else {
value =
adapterDataService.getMetricValue(
metric.getMetricSource(), metric.getMetricType(), metric.getProject());
metric.setValue(value);
}
metric.setLastUpdated(getLatestTreeUpdateDate());
metric.addHistoricValue();
// End Metric node treatment
} else if (projectTreeNode instanceof QualityIndicator) {
logger.info("Recomputing the value of the Quality Indicator " + projectTreeNode);
QualityIndicator qi = (QualityIndicator) projectTreeNode;
if (qi.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qi.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qi.setValue(computedValue);
qi.setLastUpdated(getLatestTreeUpdateDate());
treeNodeService.update(qi);
}
}
} else {
float achieved = 0;
float denominator = 0;
for (final TreeNode me : qi.getChildren()) {
float weight = ((Metric) me).getWeight();
if (me.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
if (denominator == 0) qi.getChildren().size();
qi.setValue(achieved * 100 / denominator);
}
qi.setLastUpdated(getLatestTreeUpdateDate());
qi.addHistoricValue();
// End Q.Indicator node treatment
} else if (projectTreeNode instanceof QualityObjective) {
logger.info("Recomputing the value of the Quality Objective " + projectTreeNode);
QualityObjective qo = (QualityObjective) projectTreeNode;
if (qo.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qo.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qo.setValue(computedValue);
qo.setLastUpdated(getLatestTreeUpdateDate());
}
}
} else {
float denominator = 0;
float achieved = 0;
for (final TreeNode qi : qo.getChildren()) {
float weight = ((QualityIndicator) qi).getWeight();
if (qi.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
qo.setValue(achieved * 100 / denominator);
}
qo.setLastUpdated(getLatestTreeUpdateDate());
qo.addHistoricValue();
// End Quality Objective node treatment
} else if (projectTreeNode instanceof Project) {
logger.info("Recomputing the value of the Project " + projectTreeNode);
Project prj = (Project) projectTreeNode;
double qoValueSum = 0;
double denominator = 0;
for (Object o : projectTreeNode.getChildren()) {
QualityObjective qo = (QualityObjective) o;
if (qo.getWeight() == 0) {
continue;
}
qoValueSum += qo.getValue() * (prj.isFormulaAverage() ? qo.getWeight() : 1);
denominator += prj.isFormulaAverage() ? qo.getWeight() : 1;
}
// bad idea to divide something under 0
if (denominator == 0) {
denominator = 1;
}
Double computedValue = qoValueSum / denominator;
if (computedValue != null && !computedValue.isNaN() && !computedValue.isInfinite()) {
prj.setValue(computedValue);
}
prj.setLastUpdated(getLatestTreeUpdateDate());
prj.addHistoricValue();
logger.debug(" [" + qoValueSum + "] denominator [" + denominator + "] " + computedValue);
// End Project node treatment
}
// Get a (possible) suggestion for the tree node
Multimap<?, ?> suggestions = getSuggestionForNode(projectTreeNode);
// TODO: take all the suggestions into account
Object[] types = suggestions.keys().toArray();
Object[] suggestionsValues = suggestions.values().toArray();
if (types.length > 0) {
// for now use the first item as suggestion
SuggestionType stype = (SuggestionType) types[0];
projectTreeNode.setSuggestionType(stype);
if (suggestionsValues[0] != null && !suggestionsValues[0].equals("")) {
projectTreeNode.setSuggestionValue((String) suggestionsValues[0]);
}
}
treeNodeService.update(projectTreeNode);
} catch (NamingException e) {
e.printStackTrace();
}
// Iterate the node children
TreeNode nodeChild = projectTreeNode.getParent();
UQasarUtil.postorderWithParticularNode(projectTreeNode, nodeChild);
return;
}
/**
* @param node Node whose value is studied
* @return
*/
private static Multimap<SuggestionType, Object> getSuggestionForNode(TreeNode node) {
// For storing the suggestion type and the payload
Multimap<SuggestionType, Object> suggestionsMultimap = ArrayListMultimap.create();
final String EMPTY = "";
try {
InitialContext ic = new InitialContext();
ProjectSimilarityService projectSimilarityService =
(ProjectSimilarityService) ic.lookup("java:module/ProjectSimilarityService");
QualityObjectiveSimilarityService qoSimilarityService =
(QualityObjectiveSimilarityService)
ic.lookup("java:module/QualityObjectiveSimilarityService");
// TODO: Finding similar metrics
if (node instanceof QualityObjective) {
QualityObjective qo = (QualityObjective) node;
Float value = qo.getValue();
// If the value of a quality objective cannot be computed,
// attempt to obtain a suggestion
if (value == null || value.isNaN()) {
// Attempt to find a suitable project
Project proj = qo.getProject();
Project similarProject = null;
if (proj != null) {
// Get a list of similar projects
List<Project> similarProjects = projectSimilarityService.getSimilarProjects(proj);
if (similarProjects != null && similarProjects.size() > 0) {
// For now obtain the first suitable project
similarProject = similarProjects.get(0);
}
}
// If a suitable similar project was found, search for similar Quality Objective(s) to be
// suggested
if (similarProject != null) {
// Get similar QOs from a similar project
List<QualityObjective> qos = qoSimilarityService.getSimilarQOs(qo, similarProject);
// If results were found, construct a suggestion (for now obtain the first one).
if (qos != null && qos.size() > 0) {
suggestionsMultimap.put(SuggestionType.QO_REPLACE, qos.get(0));
return suggestionsMultimap;
}
}
// Otherwise suggest the QO to be removed
suggestionsMultimap.put(SuggestionType.QO_REMOVE, null);
return suggestionsMultimap;
}
}
// if a metric has no value / the value is 0, return a suggestion to
// remove the metric
if (node instanceof Metric) {
Metric metric = (Metric) node;
Float value = metric.getValue();
if (value == null || value.isNaN() || value.isInfinite()) {
suggestionsMultimap.put(SuggestionType.METRIC_REMOVE, null);
return suggestionsMultimap;
}
}
} catch (NamingException e) {
e.printStackTrace();
}
// If no suggestion is to be provided, return an empty string
// (overwrite the possible existing suggestion).
suggestionsMultimap.put(SuggestionType.NO_SUGGESTION, "");
return suggestionsMultimap;
}
/**
* Get a list of Jenkins metrics
*
* @return
*/
public static List<String> getJenkinsMetricNames() {
String metrics[] = {
"JENKINS_PROJECTS", // Jenkins projects
"JENKINS_LATEST_BUILD_SUCCESS", // State of the latest build
"JENKINS_BUILD_HISTORY",
};
return Arrays.asList(metrics);
}
/** Uses the classes from the DB to write the RDF files based on those. */
public static void writeSemanticModelFiles() {
logger.debug("Writing the context model to a file");
// TODO: Complement the model with the other required entities
OntModel usersModel = writeUserEntries();
OntModel projectsModel = writeProjectEntries();
OntModel metadataModel = writeMetaDataModelEntries();
// uqModel.write(System.out, "RDF/XML");
// RDFDataMgr.write(System.out, uqModel, RDFFormat.RDFXML_PRETTY);
// Write the individual models to a single file
// holding all the triples
final OntModel combined = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
for (final OntModel part : new OntModel[] {usersModel, projectsModel, metadataModel}) {
combined.add(part);
}
try {
String dataDir = UQasarUtil.getDataDirPath();
// TODO: Find out why this does not work in Linux
// String modelPath = "file:///" + dataDir + ONTOLOGYFILE;
String modelPath = dataDir + ONTOLOGYFILE;
combined.write(new FileOutputStream(modelPath, false));
logger.debug("Context Model written to file " + modelPath);
UQasarUtil.setUqModel(combined);
} catch (Exception e) {
e.printStackTrace();
}
}
/** Writes the user entities to rdf */
private static OntModel writeUserEntries() {
OntModel model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
try {
thewebsemantic.Bean2RDF writer = new Bean2RDF(model);
InitialContext ic = new InitialContext();
UserService userService = (UserService) ic.lookup("java:module/UserService");
List<User> users = userService.getAll();
for (User u : users) {
writer.save(u);
}
} catch (Exception e) {
e.printStackTrace();
}
return model;
}
/** Writes the project entities to rdf */
private static OntModel writeProjectEntries() {
OntModel model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
try {
thewebsemantic.Bean2RDF writer = new Bean2RDF(model);
InitialContext ic = new InitialContext();
TreeNodeService treeNodeService = (TreeNodeService) ic.lookup("java:module/TreeNodeService");
List<Project> projects = treeNodeService.getAllProjects();
for (Project proj : projects) {
writer.save(proj);
}
} catch (Exception e) {
e.printStackTrace();
}
return model;
}
/** Write metadata entities from the beans to rdf model */
private static OntModel writeMetaDataModelEntries() {
OntModel model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
thewebsemantic.Bean2RDF writer = new Bean2RDF(model);
try {
InitialContext ic = new InitialContext();
for (final Class clazz : MetaData.getAllClasses()) {
if (ContinuousIntegrationTool.class.isAssignableFrom(clazz)) {
ContinuousIntegrationToolService cits =
(ContinuousIntegrationToolService)
ic.lookup("java:module/ContinuousIntegrationToolService");
List<ContinuousIntegrationTool> continuousIntegrationTools = cits.getAll();
for (ContinuousIntegrationTool continuousIntegrationTool : continuousIntegrationTools) {
writer.save(continuousIntegrationTool);
}
} else if (CustomerType.class.isAssignableFrom(clazz)) {
CustomerTypeService cts =
(CustomerTypeService) ic.lookup("java:module/CustomerTypeService");
List<CustomerType> customerTypes = cts.getAll();
for (CustomerType customerType : customerTypes) {
writer.save(customerType);
}
} else if (IssueTrackingTool.class.isAssignableFrom(clazz)) {
IssueTrackingToolService itts =
(IssueTrackingToolService) ic.lookup("java:module/IssueTrackingToolService");
List<IssueTrackingTool> issueTrackingTools = itts.getAll();
for (IssueTrackingTool issueTrackingTool : issueTrackingTools) {
writer.save(issueTrackingTool);
}
} else if (ProgrammingLanguage.class.isAssignableFrom(clazz)) {
ProgrammingLanguageService pls =
(ProgrammingLanguageService) ic.lookup("java:module/ProgrammingLanguageService");
List<ProgrammingLanguage> programmingLanguages = pls.getAll();
for (ProgrammingLanguage programmingLanguage : programmingLanguages) {
writer.save(programmingLanguage);
}
} else if (ProjectType.class.isAssignableFrom(clazz)) {
ProjectTypeService pts = (ProjectTypeService) ic.lookup("java:module/ProjectTypeService");
List<ProjectType> projectTypes = pts.getAll();
for (ProjectType projectType : projectTypes) {
writer.save(projectType);
}
} else if (SoftwareLicense.class.isAssignableFrom(clazz)) {
SoftwareLicenseService sls =
(SoftwareLicenseService) ic.lookup("java:module/SoftwareLicenseService");
List<SoftwareLicense> softwareLicenses = sls.getAll();
for (SoftwareLicense softwareLicense : softwareLicenses) {
writer.save(softwareLicense);
}
} else if (SoftwareType.class.isAssignableFrom(clazz)) {
SoftwareTypeService sts =
(SoftwareTypeService) ic.lookup("java:module/SoftwareTypeService");
List<SoftwareType> softwareTypes = sts.getAll();
for (SoftwareType softwareType : softwareTypes) {
writer.save(softwareType);
}
} else if (SourceCodeManagementTool.class.isAssignableFrom(clazz)) {
SourceCodeManagementToolService scmts =
(SourceCodeManagementToolService)
ic.lookup("java:module/SourceCodeManagementToolService");
List<SourceCodeManagementTool> sourceCodeManagementTools = scmts.getAll();
for (SourceCodeManagementTool sourceCodeManagementTool : sourceCodeManagementTools) {
writer.save(sourceCodeManagementTool);
}
} else if (StaticAnalysisTool.class.isAssignableFrom(clazz)) {
StaticAnalysisToolService sats =
(StaticAnalysisToolService) ic.lookup("java:module/StaticAnalysisToolService");
List<StaticAnalysisTool> staticAnalysisTools = sats.getAll();
for (StaticAnalysisTool staticAnalysisTool : staticAnalysisTools) {
writer.save(staticAnalysisTool);
}
} else if (TestManagementTool.class.isAssignableFrom(clazz)) {
TestManagementToolService tmts =
(TestManagementToolService) ic.lookup("java:module/TestManagementToolService");
List<TestManagementTool> testManagementTools = tmts.getAll();
for (TestManagementTool testManagementTool : testManagementTools) {
writer.save(testManagementTool);
}
} else if (Topic.class.isAssignableFrom(clazz)) {
TopicService ts = (TopicService) ic.lookup("java:module/TopicService");
List<Topic> topics = ts.getAll();
for (Topic topic : topics) {
writer.save(topic);
}
} else if (SoftwareDevelopmentMethodology.class.isAssignableFrom(clazz)) {
SoftwareDevelopmentMethodologyService sdms =
(SoftwareDevelopmentMethodologyService)
ic.lookup("java:module/SoftwareDevelopmentMethodologyService");
List<SoftwareDevelopmentMethodology> softwareDevelopmentMethodologies = sdms.getAll();
for (SoftwareDevelopmentMethodology softwareDevelopmentMethodology :
softwareDevelopmentMethodologies) {
writer.save(softwareDevelopmentMethodology);
}
} else if (QModelTagData.class.isAssignableFrom(clazz)) {
QModelTagDataService qmtds =
(QModelTagDataService) ic.lookup("java:module/QModelTagDataService");
List<QModelTagData> qmodelTagData = qmtds.getAll();
for (QModelTagData qmtd : qmodelTagData) {
writer.save(qmtd);
}
}
}
} catch (Exception e) {
e.printStackTrace();
}
return model;
}
/** Read the RDF model from files. */
public static void readSemanticModelFiles() {
logger.debug("Reading the model from a file");
// Read the model to an existing model
String dataDir = UQasarUtil.getDataDirPath();
String modelPath = "file:///" + dataDir + ONTOLOGYFILE;
// String modelPath =
// "file:///C:/nyrhinen/Programme/jboss-as-7.1.1.Final/standalone/data/uq-ontology-model.rdf";
OntModel model = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
RDFDataMgr.read(model, modelPath);
// Test output to standard output
// RDFDataMgr.write(System.out, uqModel, RDFFormat.RDFXML_PRETTY);
logger.debug("Model read from file " + modelPath);
UQasarUtil.setUqModel(model);
System.out.println("Reading done.");
}
public static String execSparQLQuery(String query) {
System.out.println("execSPINQuery");
Model model = getUqModel();
// Register system functions (such as sp:gt (>))
SPINModuleRegistry.get().init();
Query arqQuery = ARQFactory.get().createQuery(model, query);
ARQ2SPIN arq2SPIN = new ARQ2SPIN(model);
Select spinQuery = (Select) arq2SPIN.createQuery(arqQuery, null);
System.out.println("SPIN query in Turtle:");
model.write(System.out, FileUtils.langTurtle);
System.out.println("-----");
String str = spinQuery.toString();
System.out.println("SPIN query:\n" + str);
// Now turn it back into a Jena Query
Query parsedBack = ARQFactory.get().createQuery(spinQuery);
System.out.println("Jena query:\n" + parsedBack);
com.hp.hpl.jena.query.Query arq = ARQFactory.get().createQuery(spinQuery);
QueryExecution qexec = ARQFactory.get().createQueryExecution(arq, model);
QuerySolutionMap arqBindings = new QuerySolutionMap();
arqBindings.add("predicate", RDFS.label);
qexec.setInitialBinding(arqBindings); // Pre-assign the arguments
ResultSet rs = qexec.execSelect();
// System.out.println("#####################################################################");
//
// if (rs.hasNext()) {
// QuerySolution row = rs.next();
// System.out.println("Row: " +row.toString());
// RDFNode user = row.get("User");
// Literal label = row.getLiteral("label");
// System.out.println(user.toString());
// }
// RDFNode object = rs.next().get("object");
// System.out.println("Label is " + object);
Collection<User> users = Sparql.exec(getUqModel(), User.class, query);
String usersString = "";
for (User user : users) {
System.out.println("User: "******"<br/>";
}
System.out.println("execSPINQuery() done.");
return usersString;
}
}
/**
* Traverse the tree in postorder and update tree values
*
* @param node
*/
private static void postorderWithParticularNode(TreeNode node, TreeNode projectTreeNode) {
if (node == null) {
return;
}
if (projectTreeNode == null) {
return;
}
logger.debug("------------postorder: " + projectTreeNode.getName() + "---------------");
logger.debug("Traversing project tree in postorder..." + projectTreeNode.toString());
// Update the value
try {
InitialContext ic = new InitialContext();
AdapterDataService adapterDataService = new AdapterDataService();
TreeNodeService treeNodeService = (TreeNodeService) ic.lookup("java:module/TreeNodeService");
if (projectTreeNode instanceof Metric) {
Metric metric = (Metric) projectTreeNode;
logger.debug("Recomputing the value of the Metric " + projectTreeNode);
Float value = null;
if (metric.getMetricSource() == MetricSource.Manual) {
metric.updateQualityStatus();
} else {
value =
adapterDataService.getMetricValue(
metric.getMetricSource(), metric.getMetricType(), metric.getProject());
metric.setValue(value);
}
metric.setLastUpdated(getLatestTreeUpdateDate());
metric.addHistoricValue();
// End Metric node treatment
} else if (projectTreeNode instanceof QualityIndicator) {
logger.info("Recomputing the value of the Quality Indicator " + projectTreeNode);
QualityIndicator qi = (QualityIndicator) projectTreeNode;
if (qi.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qi.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qi.setValue(computedValue);
qi.setLastUpdated(getLatestTreeUpdateDate());
treeNodeService.update(qi);
}
}
} else {
float achieved = 0;
float denominator = 0;
for (final TreeNode me : qi.getChildren()) {
float weight = ((Metric) me).getWeight();
if (me.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
if (denominator == 0) qi.getChildren().size();
qi.setValue(achieved * 100 / denominator);
}
qi.setLastUpdated(getLatestTreeUpdateDate());
qi.addHistoricValue();
// End Q.Indicator node treatment
} else if (projectTreeNode instanceof QualityObjective) {
logger.info("Recomputing the value of the Quality Objective " + projectTreeNode);
QualityObjective qo = (QualityObjective) projectTreeNode;
if (qo.getUseFormula()) {
String formulaToEval = Formula.parseFormula(qo.getViewFormula());
if (formulaToEval != null && !formulaToEval.isEmpty()) {
Float computedValue = Formula.evalFormula(formulaToEval);
if (computedValue != null && !computedValue.isNaN()) {
qo.setValue(computedValue);
qo.setLastUpdated(getLatestTreeUpdateDate());
}
}
} else {
float denominator = 0;
float achieved = 0;
for (final TreeNode qi : qo.getChildren()) {
float weight = ((QualityIndicator) qi).getWeight();
if (qi.getQualityStatus() == QualityStatus.Green) {
achieved += weight;
}
denominator += weight;
}
qo.setValue(achieved * 100 / denominator);
}
qo.setLastUpdated(getLatestTreeUpdateDate());
qo.addHistoricValue();
// End Quality Objective node treatment
} else if (projectTreeNode instanceof Project) {
logger.info("Recomputing the value of the Project " + projectTreeNode);
Project prj = (Project) projectTreeNode;
double qoValueSum = 0;
double denominator = 0;
for (Object o : projectTreeNode.getChildren()) {
QualityObjective qo = (QualityObjective) o;
if (qo.getWeight() == 0) {
continue;
}
qoValueSum += qo.getValue() * (prj.isFormulaAverage() ? qo.getWeight() : 1);
denominator += prj.isFormulaAverage() ? qo.getWeight() : 1;
}
// bad idea to divide something under 0
if (denominator == 0) {
denominator = 1;
}
Double computedValue = qoValueSum / denominator;
if (computedValue != null && !computedValue.isNaN() && !computedValue.isInfinite()) {
prj.setValue(computedValue);
}
prj.setLastUpdated(getLatestTreeUpdateDate());
prj.addHistoricValue();
logger.debug(" [" + qoValueSum + "] denominator [" + denominator + "] " + computedValue);
// End Project node treatment
}
// Get a (possible) suggestion for the tree node
Multimap<?, ?> suggestions = getSuggestionForNode(projectTreeNode);
// TODO: take all the suggestions into account
Object[] types = suggestions.keys().toArray();
Object[] suggestionsValues = suggestions.values().toArray();
if (types.length > 0) {
// for now use the first item as suggestion
SuggestionType stype = (SuggestionType) types[0];
projectTreeNode.setSuggestionType(stype);
if (suggestionsValues[0] != null && !suggestionsValues[0].equals("")) {
projectTreeNode.setSuggestionValue((String) suggestionsValues[0]);
}
}
treeNodeService.update(projectTreeNode);
} catch (NamingException e) {
e.printStackTrace();
}
// Iterate the node children
TreeNode nodeChild = projectTreeNode.getParent();
UQasarUtil.postorderWithParticularNode(projectTreeNode, nodeChild);
return;
}