/**
* Retrives the allowed technologies per endpoint
*
* @return map of string and string list
*/
public static Map<String, List<String>> getAllowedTechnologiesPerEndpoint() {
Map<String, List<String>> measToAllowedTechs = new HashMap<String, List<String>>();
for (MappingObject mo : getMappings()) {
if (!measToAllowedTechs.containsKey(mo.getMeasurementEndpointType())) {
measToAllowedTechs.put(mo.getMeasurementEndpointType(), new ArrayList<String>());
}
measToAllowedTechs.get(mo.getMeasurementEndpointType()).add(mo.getTechnologyType());
}
return measToAllowedTechs;
}
public static MappingObject getMappingObjectForMeasurementAndTechnology(
String measurementEndpoint, String techType) {
measurementEndpoint = getTrimmedName(measurementEndpoint);
techType = getTrimmedName(techType);
for (MappingObject mappingObject : mappings) {
if (mappingObject.getMeasurementEndpointType().equals(measurementEndpoint)
&& mappingObject.getTechnologyType().equals(techType)) {
return mappingObject;
}
}
return null;
}
/**
* Select the TableReferenceObject which is required for a given tableType
*
* @param tableType - e.g. study sample or investigation
* @return TableReferenceObject if one exists, null otherwise.
*/
public static TableReferenceObject selectTROForUserSelection(String tableType) {
for (MappingObject mo : mappings) {
if (mo.getTableType().equals(tableType)) {
for (TableReferenceObject tro : assayDefinitions) {
if (tro.getTableName().equalsIgnoreCase(mo.getAssayName())) {
return new TableReferenceObject(tro.getTableFields());
}
}
}
}
return null;
}
public static TableReferenceObject searchMappingsForMatch(
String measurementEndpoint, String technologyType) {
for (MappingObject mo : getMappings()) {
if (mo.getMeasurementEndpointType().equalsIgnoreCase(measurementEndpoint)
&& mo.getTechnologyType().equalsIgnoreCase(technologyType)) {
for (TableReferenceObject tro : assayDefinitions) {
if (tro.getTableName().equalsIgnoreCase(mo.getAssayName())) {
return tro;
}
}
}
}
return null;
}
/**
* Retrieves technology types
*
* @return array of strings
*/
public static String[] getTechnologyTypes() {
List<MappingObject> assayToTypeMapping = getMappings();
Set<String> techTypeSet = new HashSet<String>();
for (MappingObject mo : assayToTypeMapping) {
if (!mo.getTechnologyType().equals("n/a") && !mo.getTechnologyType().equals("")) {
techTypeSet.add(mo.getTechnologyType());
}
}
List<String> tempTechTypes = new ArrayList<String>();
tempTechTypes.addAll(techTypeSet);
Collections.sort(tempTechTypes);
tempTechTypes.add(0, AutoFilterComboCellEditor.BLANK_VALUE);
return tempTechTypes.toArray(new String[tempTechTypes.size()]);
}
/**
* Retrieves the measurement endpoints
*
* @return array of strings with measurement endpoints
*/
public static String[] getMeasurementEndpoints() {
List<MappingObject> assayToTypeMapping = getMappings();
Set<String> measTypeSet = new HashSet<String>();
for (MappingObject mo : assayToTypeMapping) {
if (!mo.getTechnologyType().equals("n/a")
&& !mo.getMeasurementEndpointType().equalsIgnoreCase("[sample]")
&& !mo.getMeasurementEndpointType().equalsIgnoreCase("[investigation]")) {
measTypeSet.add(mo.getMeasurementEndpointType());
}
}
List<String> tempMeasTypes = new ArrayList<String>();
tempMeasTypes.addAll(measTypeSet);
Collections.sort(tempMeasTypes);
return tempMeasTypes.toArray(new String[tempMeasTypes.size()]);
}