/**
* Method called when user has finished updating a constraint.
*
* @param mapping The ActionMapping used to select this instance
* @param form The optional ActionForm bean for this request (if any)
* @param request The HTTP request we are processing
* @param response The HTTP response we are creating
* @return an ActionForward object defining where control goes next
* @exception Exception if the application business logic throws an exception
*/
@Override
public ActionForward execute(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
ProfileManager pm = im.getProfileManager();
String username = ((CreateAccountForm) form).getUsername();
String password = ((CreateAccountForm) form).getPassword();
pm.createNewProfile(username, password);
Properties webProperties = SessionMethods.getWebProperties(session.getServletContext());
try {
MailUtils.email(username, webProperties);
if (((CreateAccountForm) form).getMailinglist()
&& webProperties.getProperty("mail.mailing-list") != null
&& webProperties.getProperty("mail.mailing-list").length() > 0) {
MailUtils.subscribe(username, webProperties);
}
SessionMethods.recordMessage(
"You have successfully created an account, and logged in.", session);
} catch (Exception e) {
SessionMethods.recordError("Failed to send confirmation email", session);
}
/*
* This code generates an MD5 key for the given username which is then
* encoded in Hexadecimal. This could later be used for account
* activation.
*
* try { MessageDigest md5 = MessageDigest.getInstance("MD5"); byte[]
* buffer = username.getBytes(); md5.update(buffer); byte[] array =
* md5.digest(); String encoded = HexBin.encode(array); } catch
* (NoSuchAlgorithmException e) { }
*/
doLogin(request, username, password);
return new ActionForward("/begin.do");
}
/** {@inheritDoc} */
@SuppressWarnings("unused")
@Override
public ActionForward execute(
@SuppressWarnings("unused") ActionMapping mapping,
@SuppressWarnings("unused") ActionForm form,
HttpServletRequest request,
@SuppressWarnings("unused") HttpServletResponse response)
throws Exception {
long startTime = System.currentTimeMillis();
HttpSession session = request.getSession();
InterMineAPI im = SessionMethods.getInterMineAPI(session);
if (im.getBagManager().isAnyBagToUpgrade(SessionMethods.getProfile(session))) {
recordError(new ActionMessage("login.upgradeListManually"), request);
}
// fetch & set requested object
InterMineObject requestedObject = getRequestedObject(im, request);
if (requestedObject != null) {
ReportObjectFactory reportObjectFactory = SessionMethods.getReportObjects(session);
ReportObject reportObject = reportObjectFactory.get(requestedObject);
request.setAttribute("object", reportObject);
request.setAttribute("reportObject", reportObject);
request.setAttribute("requestedObject", requestedObject);
// hell starts here
TagManager tagManager = im.getTagManager();
ServletContext servletContext = session.getServletContext();
ObjectStore os = im.getObjectStore();
String superuser = im.getProfileManager().getSuperuser();
if (superuser.equals(SessionMethods.getProfile(session).getUsername())) {
request.setAttribute("SHOW_TAGS", true);
}
// place InlineLists based on TagManager, reportObject is cached while Controller is not
Map<String, List<InlineList>> placedInlineLists = new TreeMap<String, List<InlineList>>();
// traverse all unplaced (non-header) InlineLists
for (InlineList list : reportObject.getNormalInlineLists()) {
FieldDescriptor fd = list.getDescriptor();
String taggedType = getTaggedType(fd);
// assign lists to any aspects they are tagged to or put in unplaced lists
String fieldPath = fd.getClassDescriptor().getUnqualifiedName() + "." + fd.getName();
List<Tag> tags = tagManager.getTags(null, fieldPath, taggedType, superuser);
for (Tag tag : tags) {
String tagName = tag.getTagName();
if (AspectTagUtil.isAspectTag(tagName)) {
List<InlineList> listsForAspect = placedInlineLists.get(tagName);
if (listsForAspect == null) {
listsForAspect = new ArrayList<InlineList>();
placedInlineLists.put(tagName, listsForAspect);
}
listsForAspect.add(list);
} else if (tagName.equals(TagNames.IM_SUMMARY)) {
List<InlineList> summaryLists = placedInlineLists.get(tagName);
if (summaryLists == null) {
summaryLists = new ArrayList<InlineList>();
placedInlineLists.put(tagName, summaryLists);
}
summaryLists.add(list);
}
}
}
// any lists that aren't tagged will be 'unplaced'
List<InlineList> unplacedInlineLists =
new ArrayList<InlineList>(reportObject.getNormalInlineLists());
unplacedInlineLists.removeAll(placedInlineLists.values());
long now = System.currentTimeMillis();
LOG.info("TIME placed inline lists: " + (now - startTime) + "ms");
long stepTime = now;
request.setAttribute("mapOfInlineLists", placedInlineLists);
request.setAttribute("listOfUnplacedInlineLists", unplacedInlineLists);
Map<String, Map<String, DisplayField>> placementRefsAndCollections =
new TreeMap<String, Map<String, DisplayField>>();
Set<String> aspects = new LinkedHashSet<String>(SessionMethods.getCategories(servletContext));
Set<ClassDescriptor> cds =
os.getModel().getClassDescriptorsForClass(requestedObject.getClass());
for (String aspect : aspects) {
placementRefsAndCollections.put(
TagNames.IM_ASPECT_PREFIX + aspect,
new TreeMap<String, DisplayField>(String.CASE_INSENSITIVE_ORDER));
}
Map<String, DisplayField> miscRefs =
new TreeMap<String, DisplayField>(reportObject.getRefsAndCollections());
placementRefsAndCollections.put(TagNames.IM_ASPECT_MISC, miscRefs);
// summary refs and colls
Map<String, DisplayField> summaryRefsCols = new TreeMap<String, DisplayField>();
placementRefsAndCollections.put(TagNames.IM_SUMMARY, summaryRefsCols);
for (Iterator<Entry<String, DisplayField>> iter =
reportObject.getRefsAndCollections().entrySet().iterator();
iter.hasNext(); ) {
Map.Entry<String, DisplayField> entry = iter.next();
DisplayField df = entry.getValue();
if (df instanceof DisplayReference) {
categoriseBasedOnTags(
((DisplayReference) df).getDescriptor(),
"reference",
df,
miscRefs,
tagManager,
superuser,
placementRefsAndCollections,
SessionMethods.isSuperUser(session));
} else if (df instanceof DisplayCollection) {
categoriseBasedOnTags(
((DisplayCollection) df).getDescriptor(),
"collection",
df,
miscRefs,
tagManager,
superuser,
placementRefsAndCollections,
SessionMethods.isSuperUser(session));
}
}
// remove any fields overridden by displayers
removeFieldsReplacedByReportDisplayers(reportObject, placementRefsAndCollections);
request.setAttribute("placementRefsAndCollections", placementRefsAndCollections);
String type = reportObject.getType();
request.setAttribute("objectType", type);
String stableLink = PortalHelper.generatePortalLink(reportObject.getObject(), im, request);
if (stableLink != null) {
request.setAttribute("stableLink", stableLink);
}
stepTime = System.currentTimeMillis();
startTime = stepTime;
// attach only non empty categories
Set<String> allClasses = new HashSet<String>();
for (ClassDescriptor cld : cds) {
allClasses.add(cld.getUnqualifiedName());
}
TemplateManager templateManager = im.getTemplateManager();
Map<String, List<ReportDisplayer>> displayerMap = reportObject.getReportDisplayers();
stepTime = System.currentTimeMillis();
startTime = stepTime;
List<String> categories = new LinkedList<String>();
for (String aspect : aspects) {
// 1) Displayers
// 2) Inline Lists
if ((displayerMap != null && displayerMap.containsKey(aspect))
|| placedInlineLists.containsKey(aspect)) {
categories.add(aspect);
} else {
// 3) Templates
if (!templateManager.getReportPageTemplatesForAspect(aspect, allClasses).isEmpty()) {
categories.add(aspect);
} else {
// 4) References & Collections
if (placementRefsAndCollections.containsKey("im:aspect:" + aspect)
&& placementRefsAndCollections.get("im:aspect:" + aspect) != null) {
for (DisplayField df :
placementRefsAndCollections.get("im:aspect:" + aspect).values()) {
categories.add(aspect);
break;
}
}
}
}
}
if (!categories.isEmpty()) {
request.setAttribute("categories", categories);
}
now = System.currentTimeMillis();
LOG.info("TIME made list of categories: " + (now - stepTime) + "ms");
}
return null;
}
public TrackAjaxServices() {
HttpSession session = WebContextFactory.get().getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
uos = im.getProfileManager().getProfileObjectStoreWriter().getObjectStore();
}