/**
* Convert the contents of a ProfileManager to XML and write the XML to the given writer.
*
* @param profileManager the ProfileManager
* @param writer the XMLStreamWriter to write to
*/
public static void marshal(ProfileManager profileManager, XMLStreamWriter writer) {
try {
writer.writeStartElement("userprofiles");
String profileVersion = getProfileVersion(profileManager.getProfileObjectStoreWriter());
writer.writeAttribute(MetadataManager.PROFILE_FORMAT_VERSION, profileVersion);
List<?> usernames = profileManager.getProfileUserNames();
for (Object userName : usernames) {
Profile profile = profileManager.getProfile((String) userName);
LOG.info("Writing profile: " + profile.getUsername());
long startTime = System.currentTimeMillis();
ProfileBinding.marshal(
profile,
profileManager.getProductionObjectStore(),
writer,
profileManager.getVersion(),
getClassKeys(profileManager.getProductionObjectStore()));
long totalTime = System.currentTimeMillis() - startTime;
LOG.info(
"Finished writing profile: " + profile.getUsername() + " took " + totalTime + "ms.");
}
TrackManagerBinding.marshal(profileManager.getProfileObjectStoreWriter(), writer);
writer.writeEndElement();
} catch (XMLStreamException e) {
throw new RuntimeException(e);
}
}
/** {@inheritDoc} */
@Override
public void startElement(String uri, String localName, String qName, Attributes attrs)
throws SAXException {
if ("userprofile".equals(qName)) {
if (attrs.getValue("username") != null) {
username = attrs.getValue("username");
}
if (attrs.getValue("password") != null) {
password = attrs.getValue("password");
}
if (attrs.getValue("apikey") != null) {
apiKey = attrs.getValue("apikey");
}
if (attrs.getValue("localAccount") != null) {
isLocal = Boolean.parseBoolean(attrs.getValue("localAccount"));
}
if (attrs.getValue("superUser") != null) {
isSuperUser = Boolean.parseBoolean(attrs.getValue("superUser"));
}
}
if ("bags".equals(qName)) {
savedBags = new LinkedHashMap();
invalidBags = new LinkedHashMap();
bagsValues = new LinkedHashMap();
subHandler =
new InterMineBagHandler(
profileManager.getProfileObjectStoreWriter(),
osw,
savedBags,
invalidBags,
bagsValues);
}
if ("shared-bags".equals(qName)) {
sharedBags = new ArrayList<Map<String, String>>();
subHandler = new SharedBagHandler(sharedBags);
}
if ("template-queries".equals(qName)) {
savedTemplates = new LinkedHashMap();
subHandler = new TemplateQueryHandler(savedTemplates, version);
}
if ("queries".equals(qName)) {
savedQueries = new LinkedHashMap();
subHandler = new SavedQueryHandler(savedQueries, savedBags, version);
}
if ("tags".equals(qName)) {
subHandler = new TagHandler(username, tags);
}
if ("preferences".equals(qName)) {
subHandler = new PreferencesHandler(preferences);
}
if ("invitations".equals(qName)) {
subHandler = invitationHandler;
}
if (subHandler != null) {
subHandler.startElement(uri, localName, qName, attrs);
}
}
/** {@inheritDoc} */
@Override
public void startElement(String uri, String localName, String qName, Attributes attrs)
throws SAXException {
if ("userprofiles".equals(qName)) {
String value = attrs.getValue(MetadataManager.PROFILE_FORMAT_VERSION);
if (value == null) {
version = 0;
} else {
version = Integer.parseInt(value);
}
ObjectStoreWriter userprofileOsw = profileManager.getProfileObjectStoreWriter();
Connection con = null;
try {
con = ((ObjectStoreInterMineImpl) userprofileOsw).getConnection();
if (!DatabaseUtil.tableExists(con, "bagvalues")) {
DatabaseUtil.createBagValuesTables(con);
}
} catch (SQLException sqle) {
LOG.error("Problem retrieving connection", sqle);
} finally {
((ObjectStoreInterMineImpl) userprofileOsw).releaseConnection(con);
}
sharedBagsByUsers = new HashedMap();
}
if ("userprofile".equals(qName)) {
startTime = System.currentTimeMillis();
profileHandler = new ProfileHandler(profileManager, osw, version, sharedBagsByUsers);
}
if (profileHandler != null) {
profileHandler.startElement(uri, localName, qName, attrs);
}
if ("tracks".equals(qName)) {
trackHandler = new TrackManagerHandler(profileManager.getProfileObjectStoreWriter());
}
if (trackHandler != null) {
trackHandler.startElement(uri, localName, qName, attrs);
}
}