/**
* Save a single object to an existing bag.
*
* @param mapping The ActionMapping used to select this instance
* @param form The optional ActionForm bean for this request (if any)
* @param request The HTTP request we are processing
* @param response The HTTP response we are creating
* @return an ActionForward object defining where control goes next
*/
@Override
public ActionForward execute(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response) {
int id = Integer.parseInt(request.getParameter("object"));
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(request.getSession());
Profile profile = SessionMethods.getProfile(session);
String bagName = request.getParameter("bag");
InterMineBag existingBag = profile.getSavedBags().get(bagName);
if (existingBag != null) {
// TODO add a warning when object already in bag ??
try {
InterMineObject o = im.getObjectStore().getObjectById(id);
existingBag.addIdToBag(id, DynamicUtil.getFriendlyName(o.getClass()));
recordMessage(new ActionMessage("bag.addedToBag", existingBag.getName()), request);
} catch (IncompatibleTypesException e) {
recordError(new ActionMessage("bag.typesDontMatch"), request);
} catch (ObjectStoreException e) {
recordError(new ActionMessage("bag.error"), request, e);
}
} else {
recordError(new ActionMessage("bag.noSuchBag"), request);
}
return mapping.findForward("report");
}
protected InterMineBag createEmployeeList() throws Exception {
ObjectStoreWriter osw = null;
try {
Profile superUser = im.getProfileManager().getSuperuserProfile();
osw = ObjectStoreWriterFactory.getObjectStoreWriter("osw.unittest");
Employee e1 = new Employee();
e1.setName("Employee1");
Employee e2 = new Employee();
e2.setName("Employee2");
Department d1 = new Department();
d1.setName("department");
Company company = new CompanyShadow();
company.setName("company");
Contractor contractor = new Contractor();
contractor.setName("contractor");
osw.store(contractor);
company.addContractors(contractor);
osw.store(company);
d1.setCompany(company);
osw.store(d1);
e1.setDepartment(d1);
e2.setDepartment(d1);
osw.store(e1);
osw.store(e2);
InterMineBag list = superUser.createBag("employeeList", "Employee", "", im.getClassKeys());
Collection<Integer> ids = new ArrayList<Integer>();
ids.add(e1.getId());
ids.add(e2.getId());
list.addIdsToBag(ids, "Employee");
return list;
} finally {
osw.close();
}
}
/**
* Adds objects to the a bag for the matches against a set of identifiers.
*
* @param ids A collection of identifiers
* @param bag The bag to add the objects to
* @param type The type of this bag
* @param extraFieldValue An extra value for disambiguation.
* @param unmatchedIds An accumulator to store the failed matches.
* @param acceptableIssues the list of issues that are OK to ignore.
* @throws ClassNotFoundException if the type is not a valid class.
* @throws InterMineException If something goes wrong building the bag.
* @throws ObjectStoreException If there is a problem on the database level.
*/
protected void addIdsToList(
final Collection<? extends String> ids,
final InterMineBag bag,
final String type,
final String extraFieldValue,
final Set<String> unmatchedIds,
final Collection<String> acceptableIssues)
throws ClassNotFoundException, InterMineException, ObjectStoreException {
final BagQueryResult result =
runner.searchForBag(
type,
new ArrayList<String>(ids),
extraFieldValue,
acceptableIssues.contains(BagQueryResult.WILDCARD));
bag.addIdsToBag(result.getMatches().keySet(), type);
for (final String issueType : result.getIssues().keySet()) {
if (acceptableIssues.contains(issueType)) {
bag.addIdsToBag(result.getIssueIds(issueType), type);
} else {
unmatchedIds.addAll(result.getInputIdentifiersForIssue(issueType));
}
}
unmatchedIds.addAll(result.getUnresolvedIdentifiers());
}
/**
* Create a PathQuery to get the contents of an InterMineBag
*
* @param imBag the bag
* @param webConfig the WebConfig
* @param model the Model
* @return a PathQuery
*/
public static PathQuery makePathQueryForBag(
InterMineBag imBag, WebConfig webConfig, Model model) {
PathQuery query = new PathQuery(model);
query.addViews(getDefaultViewForClass(imBag.getType(), model, webConfig));
query.addConstraint(Constraints.in(imBag.getType(), imBag.getName()));
return query;
}
private ActionForward createBagAndGoToBagDetails(
ActionMapping mapping, InterMineBag imBag, List<Integer> bagList)
throws ObjectStoreException {
imBag.addIdsToBag(bagList, imBag.getType());
return new ForwardParameters(mapping.findForward("bagDetails"))
.addParameter("bagName", imBag.getName())
.forward();
}
private static int performBagOperation(BagOperation operation) throws BagOperationException {
InterMineBag newBag = operation.operate();
try {
return newBag.size();
} catch (ObjectStoreException e) {
// Really shouldn't happen.
throw new BagOperationException("Could not read size");
}
}
private boolean createBag(InterMineBag origBag, String newBagName, Profile profile)
throws ObjectStoreException {
// Clone method clones the bag in the database
InterMineBag newBag = (InterMineBag) origBag.clone();
newBag.setDate(new Date());
newBag.setName(newBagName);
profile.saveBag(newBagName, newBag);
newBag.addBagValues();
return true;
}
@Override
protected void makeList(
final ListInput listInput,
final String type,
final Profile profile,
final Set<String> temporaryBagNamesAccumulator)
throws Exception {
if (StringUtils.isBlank(type)) {
throw new BadRequestException("No list type provided");
}
ListCreationInput input = (ListCreationInput) listInput;
if (input.doReplace()) {
ListServiceUtils.ensureBagIsDeleted(profile, input.getListName());
}
if (profile.getAllBags().containsKey(input.getListName())) {
throw new BadRequestException(
"Attempt to overwrite an existing bag - name: '" + input.getListName() + "'");
}
final Set<String> ids = new LinkedHashSet<String>();
final Set<String> unmatchedIds = new HashSet<String>();
final InterMineBag tempBag =
profile.createBag(
input.getTemporaryListName(), type, input.getDescription(), im.getClassKeys());
processIdentifiers(type, input, ids, unmatchedIds, tempBag);
setListSize(tempBag.size());
for (final Iterator<String> i = unmatchedIds.iterator(); i.hasNext(); ) {
final List<String> row = new ArrayList<String>(Arrays.asList(i.next()));
if (i.hasNext()) {
row.add("");
}
output.addResultItem(row);
}
if (!input.getTags().isEmpty()) {
im.getBagManager().addTagsToBag(input.getTags(), tempBag, profile);
}
profile.renameBag(input.getTemporaryListName(), input.getListName());
}
private void delete(ActionForm form, HttpServletRequest request) throws Exception {
HttpSession session = request.getSession();
Profile profile = SessionMethods.getProfile(session);
ModifyBagForm mbf = (ModifyBagForm) form;
for (int i = 0; i < mbf.getSelectedBags().length; i++) {
String bagName = mbf.getSelectedBags()[i];
InterMineBag bag = profile.getSavedBags().get(bagName);
if (bag != null) {
deleteQueriesThatMentionBag(profile, bag.getName());
deleteBag(session, profile, bag);
} else {
bag = profile.getSharedBags().get(bagName);
if (bag == null) {
LOG.error("Asked to delete a bag this user does not have access to.");
} else {
unshareBag(session, profile, bag);
}
}
}
}
/** {@inheritDoc} */
@Override
public ActionForward execute(
ComponentContext context,
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
InterMineBag imBag = (InterMineBag) request.getAttribute("bag");
WebConfig webConfig = SessionMethods.getWebConfig(request);
Model model = im.getModel();
TemplateManager templateManager = im.getTemplateManager();
Map<Class, ApiTemplate> conversionTypesMap =
TypeConverter.getConversionTemplates(
templateManager.getConversionTemplates(),
TypeUtil.instantiate(model.getPackageName() + "." + imBag.getType()));
ArrayList<String> conversionTypes = new ArrayList<String>();
Map<Type, Boolean> fastaMap = new HashMap<Type, Boolean>();
for (Class<?> clazz : conversionTypesMap.keySet()) {
conversionTypes.add(TypeUtil.unqualifiedName(clazz.getName()));
Type type = webConfig.getTypes().get(clazz.getName());
FieldConfig fieldConfig = type.getFieldConfigMap().get("length");
if (fieldConfig != null && fieldConfig.getDisplayer() != null) {
fastaMap.put(type, Boolean.TRUE);
} else {
fastaMap.put(type, Boolean.FALSE);
}
}
// Use custom converters
BagQueryConfig bagQueryConfig = im.getBagQueryConfig();
String bagType = imBag.getType();
Set<AdditionalConverter> additionalConverters = bagQueryConfig.getAdditionalConverters(bagType);
request.setAttribute("customConverters", additionalConverters);
request.setAttribute("conversionTypes", conversionTypes);
request.setAttribute("fastaMap", fastaMap);
return null;
}
protected InterMineBag createCompanyList() throws Exception {
ObjectStoreWriter osw = null;
try {
osw = ObjectStoreWriterFactory.getObjectStoreWriter("osw.unittest");
Profile superUser = im.getProfileManager().getSuperuserProfile();
Company c1 = new CompanyShadow();
c1.setName("CompanyA");
Company c2 = new CompanyShadow();
c2.setName("CompanyB");
osw.store(c1);
osw.store(c2);
InterMineBag list = superUser.createBag("companyList", "Company", "", im.getClassKeys());
Collection<Integer> ids = new ArrayList<Integer>();
ids.add(c1.getId());
ids.add(c2.getId());
list.addIdsToBag(ids, "Company");
return list;
} finally {
osw.close();
}
}
/**
* Generate a list from a pathquery.
*
* @param pq The pathquery
* @param name The name of the list
* @param description The description of the list
* @param tags A list of tags to add to the list
* @param profile The profile the list should belong to
* @throws ObjectStoreException If there is an issue running the queries that generate the list.
* @throws PathException If the paths supplied are illegal.
*/
protected void generateListFromQuery(
PathQuery pq, String name, String description, List<String> tags, Profile profile)
throws ObjectStoreException, PathException {
Query q = getQuery(pq, profile);
String tempName = name + TEMP;
String viewPathString = pq.getView().get(0);
Path viewPath = pq.makePath(viewPathString);
String type = viewPath.getLastClassDescriptor().getUnqualifiedName();
try {
InterMineBag newList = profile.createBag(tempName, type, description, im.getClassKeys());
newList.addToBagFromQuery(q);
try {
im.getBagManager().addTagsToBag(tags, newList, profile);
} catch (TagManager.TagNameException e) {
throw new BadRequestException(e.getMessage());
} catch (TagManager.TagNamePermissionException e) {
throw new ServiceForbiddenException(e.getMessage());
}
profile.renameBag(tempName, name);
output.addResultItem(Arrays.asList("" + newList.size()));
} catch (CompletelyFalseException e) {
output.addResultItem(Arrays.asList("0"));
throw new BadRequestException("List not created - it would be of size 0");
} catch (UnknownBagTypeException e) {
output.addResultItem(Arrays.asList("0"));
throw new InternalErrorException(e.getMessage(), e);
} catch (ClassKeysNotFoundException cke) {
throw new BadRequestException("Bag has not class key set", cke);
} finally {
if (profile.getSavedBags().containsKey(tempName)) {
profile.deleteBag(tempName);
}
}
}
// Remove a bag from userprofile database and session cache
private void deleteBag(HttpSession session, Profile profile, InterMineBag bag)
throws ObjectStoreException {
// removed a cached bag table from the session
SessionMethods.invalidateBagTable(session, bag.getName());
profile.deleteBag(bag.getName());
}
private void copy(ActionForm form, HttpServletRequest request) throws ObjectStoreException {
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
Profile profile = SessionMethods.getProfile(session);
ModifyBagForm frm = (ModifyBagForm) form;
String[] selectedBagNames = frm.getSelectedBags();
BagManager bagManager = im.getBagManager();
Map<String, InterMineBag> allBags = bagManager.getBags(profile);
String newNameTextBox = getNewNameTextBox(request, frm.getNewBagName());
if (selectedBagNames.length == 1) {
String selectedBagName = selectedBagNames[0];
InterMineBag origBag = allBags.get(selectedBagName);
if (origBag == null) {
recordError(new ActionMessage("errors.bag.notfound"), request);
return;
}
String newBagName = "";
if (newNameTextBox != null) {
newBagName = NameUtil.validateName(allBags.keySet(), newNameTextBox);
if (newBagName.isEmpty()) {
recordError(new ActionMessage("bag.createdlists.notvalidname", newNameTextBox), request);
return;
}
}
if (newNameTextBox == null) {
newBagName = NameUtil.generateNewName(allBags.keySet(), selectedBagName);
}
if (createBag(origBag, newBagName, profile)) {
recordMessage(new ActionMessage("bag.createdlists", newBagName), request);
// track the list creation
im.getTrackerDelegate()
.trackListCreation(
origBag.getType(),
origBag.getSize(),
ListBuildMode.OPERATION,
profile,
session.getId());
}
} else {
if (newNameTextBox != null) {
recordError(new ActionMessage("errors.bag.namecannotbespecified"), request);
return;
}
String msg = "";
for (int i = 0; i < selectedBagNames.length; i++) {
String selectedBagName = selectedBagNames[i];
InterMineBag origBag = allBags.get(selectedBagName);
if (origBag == null) {
recordError(new ActionMessage("errors.bag.notfound"), request);
return;
}
String newBagName = NameUtil.generateNewName(allBags.keySet(), selectedBagName);
if (createBag(origBag, newBagName, profile)) {
msg += newBagName + ", ";
}
}
if (msg.length() > 2) {
msg = msg.substring(0, msg.length() - 2);
}
if (msg.length() > 0) {
recordMessage(new ActionMessage("bag.createdlists", msg), request);
}
}
}
/** {@inheritDoc} */
@Override
public ActionForward execute(
ComponentContext context,
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
boolean canExportAsBED = false;
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
Model model = im.getModel();
PathQuery query = new PathQuery(model);
// org and dbkey for galaxy use
Set<String> orgSet = new HashSet<String>();
Set<String> genomeBuildSet = new HashSet<String>();
// Build GenomicRegion pathquery, the request is from GenomicRegionSearch "export to Galaxy"
if (request.getParameter("featureIds") != null) {
String featureIds = request.getParameter("featureIds").trim();
String orgName = request.getParameter("orgName");
if (orgName != null && !"".equals(orgName)) {
orgSet.add(orgName);
}
// Refer to GenomicRegionSearchService.getExportFeaturesQuery method
String path = "SequenceFeature";
query.addView(path + ".primaryIdentifier");
query.addView(path + ".chromosomeLocation.locatedOn.primaryIdentifier");
query.addView(path + ".chromosomeLocation.start");
query.addView(path + ".chromosomeLocation.end");
query.addView(path + ".organism.name");
// use ids or pids
String[] idsInStr = featureIds.split(",");
Set<Integer> ids = new HashSet<Integer>();
boolean isIds = true;
for (String id : idsInStr) {
id = id.trim();
if (!Pattern.matches("^\\d+$", id)) {
isIds = false;
break;
}
ids.add(Integer.valueOf(id));
}
if (isIds) {
query.addConstraint(Constraints.inIds(path, ids));
} else {
if (featureIds.contains("'")) {
featureIds = featureIds.replaceAll("'", "\\\\'");
}
query.addConstraint(Constraints.lookup(path, featureIds, null));
}
canExportAsBED = true;
} else { // request from normal result table
String tableName = request.getParameter("table");
request.setAttribute("table", tableName);
PagedTable pt = SessionMethods.getResultsTable(session, tableName);
// Null check to page table, maybe session timeout?
if (pt == null) {
LOG.error("Page table is NULL...");
return null;
}
// Check if can export as BED
TableHttpExporter tableExporter = new BEDHttpExporter();
try {
canExportAsBED = tableExporter.canExport(pt);
} catch (Exception e) {
canExportAsBED = false;
LOG.error("Caught an error running canExport() for: BEDHttpExporter. " + e);
e.printStackTrace();
}
LinkedHashMap<Path, Integer> exportClassPathsMap = getExportClassPaths(pt);
List<Path> exportClassPaths = new ArrayList<Path>(exportClassPathsMap.keySet());
Map<String, String> pathMap = new LinkedHashMap<String, String>();
for (Path path : exportClassPaths) {
String pathString = path.toStringNoConstraints();
String displayPath = pathString.replace(".", " > ");
pathMap.put(pathString, displayPath);
}
Map<String, Integer> pathIndexMap = new LinkedHashMap<String, Integer>();
for (int index = 0; index < exportClassPaths.size(); index++) {
String pathString = exportClassPaths.get(index).toStringNoConstraints();
Integer idx = exportClassPathsMap.get(exportClassPaths.get(index));
pathIndexMap.put(pathString, idx);
}
request.setAttribute("exportClassPaths", pathMap);
request.setAttribute("pathIndexMap", pathIndexMap);
// Support export public and private lists to Galaxy
query = pt.getWebTable().getPathQuery();
ObjectStore os = im.getObjectStore();
Map<PathConstraint, String> constrains = query.getConstraints();
for (PathConstraint constraint : constrains.keySet()) {
if (constraint instanceof PathConstraintBag) {
String bagName = ((PathConstraintBag) constraint).getBag();
InterMineBag imBag =
im.getBagManager().getBag(SessionMethods.getProfile(session), bagName);
// find the classKeys
Set<String> classKeySet = new LinkedHashSet<String>();
for (Integer id : imBag.getContentsAsIds()) {
String classKey = pt.findClassKeyValue(im.getClassKeys(), os.getObjectById(id));
classKeySet.add(classKey);
}
String path = ((PathConstraintBag) constraint).getPath();
// replace constraint in the pathquery
PathConstraintLookup newConstraint =
new PathConstraintLookup(
path,
classKeySet.toString().substring(1, classKeySet.toString().length() - 1),
null);
query.replaceConstraint(constraint, newConstraint);
}
}
orgSet = SequenceFeatureExportUtil.getOrganisms(query, session);
}
if (query instanceof TemplateQuery) {
TemplateQuery templateQuery = (TemplateQuery) query;
Map<PathConstraint, SwitchOffAbility> constraintSwitchOffAbilityMap =
templateQuery.getConstraintSwitchOffAbility();
for (Map.Entry<PathConstraint, SwitchOffAbility> entry :
constraintSwitchOffAbilityMap.entrySet()) {
if (entry.getValue().compareTo(SwitchOffAbility.OFF) == 0) {
templateQuery.removeConstraint(entry.getKey());
}
}
}
String queryXML =
PathQueryBinding.marshal(query, "", model.getName(), PathQuery.USERPROFILE_VERSION);
// String encodedQueryXML = URLEncoder.encode(queryXML, "UTF-8");
String tableViewURL =
new URLGenerator(request).getPermanentBaseURL() + "/service/query/results";
request.setAttribute("tableURL", tableViewURL);
request.setAttribute("queryXML", queryXML);
request.setAttribute("size", 1000000);
// If can export as BED
request.setAttribute("canExportAsBED", canExportAsBED);
if (canExportAsBED) {
String bedURL =
new URLGenerator(request).getPermanentBaseURL() + "/service/query/results/bed";
request.setAttribute("bedURL", bedURL);
genomeBuildSet =
(Set<String>) OrganismGenomeBuildLookup.getGenomeBuildByOrgansimCollection(orgSet);
String org =
(orgSet.size() < 1) ? "Organism information not available" : StringUtil.join(orgSet, ",");
// possible scenario: [null, ce3, null], should remove all null element and then join
genomeBuildSet.removeAll(Collections.singleton(null));
String dbkey =
(genomeBuildSet.size() < 1)
? "Genome Build information not available"
: StringUtil.join(genomeBuildSet, ",");
request.setAttribute("org", org);
request.setAttribute("dbkey", dbkey);
}
// PathMap
Map<String, String> pathsMap = new LinkedHashMap<String, String>();
List<String> views = query.getView();
for (String view : views) {
String title = query.getGeneratedPathDescription(view);
title = WebUtil.formatColumnName(title);
pathsMap.put(view, title);
}
request.setAttribute("pathsMap", pathsMap);
return null;
}
/**
* Forward to the correct method based on the button pressed
*
* @param mapping The ActionMapping used to select this instance
* @param form The optional ActionForm bean for this request (if any)
* @param request The HTTP request we are processing
* @param response The HTTP response we are creating
* @return an ActionForward object defining where control goes next
* @exception Exception if the application business logic throws an exception
*/
@Override
public ActionForward execute(
ActionMapping mapping,
ActionForm form,
HttpServletRequest request,
HttpServletResponse response)
throws Exception {
HttpSession session = request.getSession();
final InterMineAPI im = SessionMethods.getInterMineAPI(session);
Profile profile = SessionMethods.getProfile(session);
Model model = im.getModel();
ModifyBagDetailsForm mbdf = (ModifyBagDetailsForm) form;
BagManager bagManager = im.getBagManager();
InterMineBag imBag = bagManager.getBag(profile, mbdf.getBagName());
String bagIdentifier = "bag." + imBag.getName();
if (request.getParameter("removeFromBag") != null) {
PagedTable pc = SessionMethods.getResultsTable(session, bagIdentifier);
String msg = "";
if (pc.isAllRowsSelected()) {
// TODO these messages need to be moved to properties file
msg = "You can't remove all items from your list. Try deleting your list instead.";
} else {
int removed = pc.removeSelectedFromBag(imBag, session);
msg = "You have removed " + removed + " items from your list.";
}
SessionMethods.recordMessage(msg, session);
// return new ForwardParameters(mapping.findForward("bagDetails"))
// .addParameter("bagName", mbdf.getBagName()).forward();
// pass an extra parameter telling the JSP to open up the results table
return new ForwardParameters(mapping.findForward("bagDetails"))
.addParameter("bagName", mbdf.getBagName())
.addParameter("table", "open")
.forward();
} else if (request.getParameter("addToBag") != null) {
InterMineBag newBag = bagManager.getBag(profile, mbdf.getExistingBagName());
String msg = "";
if (newBag.getType().equals(imBag.getType())) {
PagedTable pc = SessionMethods.getResultsTable(session, bagIdentifier);
int oldSize = newBag.size();
pc.addSelectedToBag(newBag);
int newSize = newBag.size();
int added = newSize - oldSize;
msg =
"You have added "
+ added
+ " items from list <strong>"
+ imBag.getName()
+ "</strong> to list <strong>"
+ newBag.getName()
+ "</strong>";
} else {
msg = "You can only add objects to other lists of the same type";
}
SessionMethods.recordMessage(msg, session);
// orthologues form
} else if (request.getParameter("convertToThing") != null) {
BagQueryConfig bagQueryConfig = im.getBagQueryConfig();
Set<AdditionalConverter> additionalConverters =
bagQueryConfig.getAdditionalConverters(imBag.getType());
if (additionalConverters != null && !additionalConverters.isEmpty()) {
for (AdditionalConverter additionalConverter : additionalConverters) {
BagConverter bagConverter =
PortalHelper.getBagConverter(
im, SessionMethods.getWebConfig(request), additionalConverter.getClassName());
List<Integer> converted =
bagConverter.getConvertedObjectIds(
profile, imBag.getType(), imBag.getContentsAsIds(), mbdf.getExtraFieldValue());
if (converted.size() == 1) {
return goToReport(mapping, converted.get(0).toString());
}
String bagName =
NameUtil.generateNewName(
profile.getSavedBags().keySet(),
mbdf.getExtraFieldValue() + " orthologues of " + imBag.getName());
InterMineBag newBag = profile.createBag(bagName, imBag.getType(), "", im.getClassKeys());
return createBagAndGoToBagDetails(mapping, newBag, converted);
}
}
// "use in bag" link
} else if (request.getParameter("useBag") != null) {
PagedTable pc = SessionMethods.getResultsTable(session, bagIdentifier);
PathQuery pathQuery = pc.getWebTable().getPathQuery().clone();
SessionMethods.setQuery(session, pathQuery);
session.setAttribute("path", imBag.getType());
session.setAttribute("prefix", imBag.getType());
String msg = "You can now create a query using your list " + imBag.getName();
SessionMethods.recordMessage(msg, session);
return mapping.findForward("query");
// convert links
} else if (request.getParameter("convert") != null && request.getParameter("bagName") != null) {
String type2 = request.getParameter("convert");
TemplateManager templateManager = im.getTemplateManager();
PathQuery q =
BagConversionHelper.getConvertedObjects(
session,
templateManager.getConversionTemplates(),
TypeUtil.instantiate(model.getPackageName() + "." + imBag.getType()),
TypeUtil.instantiate(model.getPackageName() + "." + type2),
imBag);
q.setTitle(type2 + "s from list '" + imBag.getName() + "'");
SessionMethods.loadQuery(q, session, response);
String qid = SessionMethods.startQueryWithTimeout(request, false, q);
Thread.sleep(200); // slight pause in the hope of avoiding holding page
final String trail = "|bag." + imBag.getName();
return new ForwardParameters(mapping.findForward("waiting"))
.addParameter("trail", trail)
.addParameter("qid", qid)
.forward();
}
return new ForwardParameters(mapping.findForward("bagDetails"))
.addParameter("bagName", mbdf.getBagName())
.forward();
}